genome.fa.s2.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  62  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23384114--23384144	16	1.9	16	93	0	53	67	19	0	12	1.22
23385422--23385462	20	2.0	20	100	0	82	43	4	19	31	1.72
23386674--23386702	12	2.3	13	94	5	51	65	0	0	34	0.93
23387594--23387620	2	13.5	2	100	0	54	51	0	0	48	1.00
23405096--23405305	108	1.9	107	85	5	289	45	5	12	36	1.65
23421154--23421205	25	2.1	25	92	0	86	38	7	28	25	1.83
23433760--23433818	30	2.0	30	86	0	82	33	15	10	40	1.81
23433891--23433946	17	3.4	17	73	12	62	41	5	14	39	1.68
23434462--23435589	562	2.0	562	95	1	2051	37	12	12	37	1.81
23437190--23437243	24	2.2	24	79	17	67	46	3	3	46	1.38
23437182--23437638	216	2.1	219	86	4	638	44	5	8	40	1.60
23437874--23438038	83	2.0	82	96	1	303	45	7	4	41	1.54
23439548--23439589	18	2.4	18	88	4	59	26	0	9	64	1.24
23446558--23446589	16	2.0	16	93	0	55	46	12	21	18	1.82
23450176--23450208	16	2.0	17	88	5	50	24	6	3	66	1.28
23451487--23451601	35	3.4	35	72	7	110	31	24	13	30	1.94
23451487--23451622	67	2.0	67	89	0	209	35	24	13	26	1.93
23453795--23453842	19	2.6	19	75	15	55	41	10	16	31	1.82
23456756--23456827	37	1.9	37	94	0	126	23	19	25	31	1.98
23456847--23456888	21	2.0	21	85	0	57	33	16	28	21	1.95
23461294--23461407	35	3.3	35	71	7	117	35	27	11	26	1.91
23463828--23463933	40	2.7	40	85	5	137	20	16	40	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23463870--23463933	19	3.3	19	72	8	65	20	18	42	18	1.90
23465810--23465996	73	2.6	72	81	5	189	25	18	17	39	1.92
23470393--23470436	17	2.4	19	85	11	56	50	4	38	6	1.50
23470466--23470507	22	1.9	22	90	9	68	40	4	33	21	1.74
23470472--23470514	22	2.0	21	82	8	52	41	6	32	18	1.77
23470630--23470709	33	2.3	35	89	4	119	32	12	22	32	1.91
23470870--23470948	5	15.2	5	86	5	104	78	0	21	0	0.75
23470948--23470992	2	22.5	2	81	0	54	46	6	2	44	1.42
23470993--23471048	25	2.2	24	84	6	67	41	14	30	14	1.85
23472864--23472903	21	1.9	21	84	0	53	15	25	5	55	1.60
23482266--23482412	35	4.2	35	92	0	231	23	34	10	31	1.89
23483941--23483983	19	2.4	18	79	20	54	48	4	0	46	1.22
23483945--23483982	19	2.0	19	90	10	60	47	5	0	47	1.24
23484501--23484698	73	2.7	73	89	0	288	23	21	15	39	1.91
23488760--23488814	21	2.6	21	88	5	76	47	12	14	25	1.80
23504405--23504441	19	1.9	19	94	0	65	18	29	27	24	1.98
23505018--23505081	19	3.4	19	68	8	58	20	40	17	21	1.91
23512021--23512061	15	2.5	17	76	11	50	46	0	9	43	1.36
23514469--23514890	214	2.0	215	97	0	794	35	18	20	24	1.95
23515682--23515724	20	2.1	20	83	12	52	46	32	0	20	1.51
23515727--23515832	38	2.7	40	85	2	144	24	38	14	22	1.91
23520033--23520075	13	3.1	14	83	10	61	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23520041--23520075	16	2.4	14	90	9	52	11	0	0	88	0.51
23520029--23520076	15	3.3	15	77	22	57	18	0	0	81	0.70
23525833--23525883	15	3.4	15	83	0	66	31	3	15	49	1.63
23525918--23525957	5	8.2	5	86	5	55	40	2	22	35	1.68
23528344--23528403	30	2.1	29	81	6	68	30	6	23	40	1.80
23531732--23531760	2	14.5	2	100	0	58	51	0	0	48	1.00
23532013--23532148	60	2.3	60	82	5	159	27	22	17	32	1.96
23533544--23533690	37	4.0	37	87	2	206	32	10	33	23	1.89
23538471--23538505	2	17.5	2	100	0	70	48	0	0	51	1.00
23539974--23540012	21	1.9	20	89	5	60	20	20	20	38	1.94
23539979--23540247	74	3.6	74	85	2	335	21	19	17	41	1.90
23545876--23546149	62	4.4	61	78	5	244	25	25	17	31	1.97
23548790--23548894	54	1.9	54	96	0	192	29	17	25	27	1.97
23567984--23568239	74	3.5	74	87	1	325	23	22	16	37	1.93
23569634--23569782	28	5.3	28	72	12	110	34	12	14	37	1.85
23569647--23570022	81	4.7	81	81	6	399	31	14	14	39	1.86
23592297--23592333	19	1.9	19	88	0	56	27	21	21	29	1.99
23592824--23592945	37	3.3	37	84	2	174	25	37	8	28	1.85
23604246--23604373	67	2.0	61	88	10	177	54	7	10	25	1.62
23613379--23613503	42	3.0	42	91	0	205	23	32	22	21	1.98
23617637--23617683	22	2.1	23	84	11	62	31	6	12	48	1.66
23618313--23618535	112	2.0	111	99	0	428	23	8	16	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23619080--23619136	21	2.8	21	78	7	64	26	3	5	64	1.30
23623338--23623379	19	2.2	19	91	0	66	38	9	35	16	1.81
23625721--23625776	25	2.2	25	84	6	69	14	30	14	41	1.85
23625829--23625869	5	8.0	5	83	5	55	0	19	0	80	0.71
23625885--23626007	61	2.0	60	96	3	237	17	30	13	38	1.88
23634208--23634250	20	2.2	20	86	0	59	0	13	4	81	0.84
23642122--23642163	19	2.2	19	86	0	57	35	9	35	19	1.84
23646405--23646431	2	13.5	2	100	0	54	51	0	0	48	1.00
23646677--23646728	2	25.5	2	80	3	59	46	1	3	48	1.31
23646684--23646727	12	3.7	12	93	0	70	45	0	4	50	1.22
23653991--23654060	30	2.3	31	80	2	79	20	12	22	44	1.85
23662444--23662595	37	4.1	37	91	3	243	23	34	11	30	1.90
23676166--23676288	42	2.9	42	90	0	201	21	21	33	23	1.97
23676523--23676584	26	2.4	26	91	0	97	25	3	38	32	1.72
23677709--23677739	2	15.5	2	100	0	62	51	0	0	48	1.00
23677758--23677878	43	2.9	42	83	2	161	20	30	22	26	1.98
23685136--23685257	42	2.9	42	87	2	156	21	31	20	26	1.98
23689555--23689671	61	1.9	61	91	0	189	23	35	17	23	1.95
23716129--23716243	37	3.1	36	88	5	176	24	35	10	29	1.89
23719314--23719344	16	1.9	16	93	0	53	25	0	48	25	1.52
23723334--23723371	20	2.0	20	89	5	60	42	15	0	42	1.47
23727031--23727070	21	1.9	21	89	0	62	17	25	7	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23728037--23728122	43	2.0	43	95	0	154	25	27	8	38	1.84
23746771--23746950	68	2.7	67	80	7	193	39	11	15	34	1.82
23747541--23747590	20	2.5	20	100	0	100	42	16	16	26	1.88
23751277--23751501	61	3.7	61	90	0	324	25	33	16	24	1.96
23754640--23754708	35	2.0	35	91	0	111	20	11	31	36	1.88
23754725--23754831	34	3.1	34	81	5	108	27	10	33	28	1.89
23754752--23754842	34	2.6	35	82	1	112	26	10	29	32	1.91
23755051--23755109	25	2.4	24	83	8	73	42	13	28	15	1.85
23758067--23758126	28	2.1	28	84	6	75	41	20	8	30	1.81
23768015--23768117	40	2.6	39	87	6	143	21	36	18	23	1.95
23768048--23768191	38	3.7	38	88	3	182	20	36	18	23	1.95
23775034--23775063	2	15.0	2	92	0	51	50	3	0	46	1.18
23775510--23775553	19	2.3	19	76	0	52	31	25	25	18	1.97
23778454--23778501	18	2.6	19	86	3	71	41	2	0	56	1.11
23783048--23783152	35	3.0	35	100	0	210	42	2	5	48	1.41
23783967--23784103	37	3.7	37	79	3	141	37	26	9	26	1.87
23788885--23788958	29	2.5	30	80	4	78	29	13	13	43	1.82
23789609--23789688	31	2.6	31	82	7	94	42	5	18	33	1.72
23792325--23792437	32	3.4	32	70	11	102	35	28	11	24	1.90
23792298--23792473	67	2.6	67	84	3	214	35	26	12	25	1.92
23792344--23792465	35	3.6	34	74	8	115	33	27	13	25	1.93
23796955--23797073	60	2.0	60	81	3	141	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23796938--23797080	60	2.4	60	79	6	137	33	19	19	27	1.96
23803725--23803809	39	2.2	39	89	4	127	34	21	20	24	1.97
23803907--23803963	21	2.7	21	94	0	105	24	19	29	26	1.98
23804210--23804324	43	2.7	43	86	0	158	20	34	19	26	1.96
23805622--23805654	2	16.5	2	100	0	66	48	0	0	51	1.00
23805654--23805680	2	13.5	2	100	0	54	0	0	48	51	1.00
23808707--23808764	28	2.1	28	90	0	89	34	20	17	27	1.95
23809633--23809691	25	2.4	25	82	0	73	25	15	33	25	1.95
23812590--23812618	14	2.0	15	93	6	51	37	13	20	27	1.91
23813519--23813543	3	8.3	3	100	0	50	0	36	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106