genome.fa.s2.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  76  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28997129--28997267	67	2.1	67	89	5	210	25	12	28	33	1.92
28997129--28997255	32	3.8	33	76	12	118	25	13	27	33	1.93
29002629--29002659	16	1.9	16	93	0	53	22	3	9	64	1.38
29002863--29002935	21	3.5	21	88	0	110	42	21	10	24	1.85
29004831--29005464	320	2.0	319	89	2	963	31	15	16	36	1.90
29010658--29010708	21	2.4	21	83	0	66	33	11	15	39	1.84
29012823--29012859	18	2.1	17	90	5	56	35	2	13	48	1.57
29016776--29016829	24	2.2	24	100	0	108	33	16	16	33	1.92
29017718--29017932	71	3.1	68	79	10	202	35	5	12	46	1.64
29017722--29017934	36	6.1	35	79	5	211	35	5	12	46	1.64
29020893--29020935	10	4.2	10	87	3	50	46	6	2	44	1.43
29020900--29020935	2	18.0	2	88	0	54	47	2	2	47	1.31
29026063--29026122	23	2.6	23	86	0	84	28	3	40	28	1.72
29030680--29030713	2	17.0	2	100	0	68	50	0	0	50	1.00
29030804--29030836	2	16.5	2	100	0	66	48	0	0	51	1.00
29030681--29030915	123	1.9	122	99	0	461	40	13	5	40	1.68
29033150--29033400	42	6.0	42	88	0	322	22	30	22	24	1.99
29041850--29041891	21	2.0	21	90	0	66	23	23	23	28	2.00
29041806--29041933	63	2.0	63	84	0	166	25	27	20	27	1.99
29041869--29041996	42	3.0	42	86	2	177	24	32	21	21	1.98
29041767--29041975	105	2.0	105	86	0	292	24	29	21	24	1.99
29044757--29044804	21	2.4	20	86	6	71	25	22	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29047151--29047196	20	2.3	20	96	0	83	28	4	23	43	1.73
29047241--29047293	28	1.9	27	88	3	79	33	16	18	30	1.94
29053046--29053216	56	3.0	56	83	6	209	37	11	8	42	1.72
29053046--29053213	28	5.9	29	82	8	184	38	11	8	42	1.71
29058551--29058603	27	2.0	27	85	3	72	11	30	13	45	1.78
29058562--29058612	27	1.9	26	88	4	75	7	27	15	49	1.72
29061237--29061296	32	1.9	31	89	3	93	41	28	3	26	1.71
29066740--29066774	2	17.5	2	100	0	70	48	0	0	51	1.00
29066812--29066928	42	2.8	42	90	2	191	23	33	23	19	1.97
29078502--29078621	42	2.9	41	81	2	132	24	34	17	24	1.96
29078642--29078669	2	14.0	2	100	0	56	50	0	0	50	1.00
29081272--29081433	58	2.8	57	83	6	193	38	9	12	38	1.77
29081272--29081434	28	5.6	28	82	5	182	38	9	12	39	1.77
29082086--29082168	42	2.0	42	95	0	148	42	12	12	33	1.79
29087345--29087376	16	2.0	16	100	0	64	43	12	0	43	1.42
29089528--29089647	59	2.0	60	83	6	154	24	29	11	35	1.91
29095985--29096073	36	2.5	36	85	3	108	37	24	13	24	1.92
29097405--29097573	56	3.0	55	79	6	196	31	16	30	21	1.96
29097405--29097648	112	2.2	112	79	7	246	31	16	29	22	1.96
29101719--29101784	27	2.5	27	72	16	66	54	0	0	45	0.99
29101914--29101963	21	2.3	21	80	10	57	54	2	2	42	1.23
29102452--29102488	11	3.4	11	92	0	56	27	10	16	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29104890--29104943	24	2.3	23	79	17	58	25	0	5	68	1.11
29105630--29105697	21	3.2	21	87	0	91	33	20	19	26	1.96
29106270--29106304	15	2.3	15	100	0	70	82	5	0	11	0.82
29106622--29106667	8	5.9	8	89	2	58	28	43	0	28	1.55
29106613--29106660	24	2.0	23	92	4	78	31	41	0	27	1.56
29109041--29109204	43	3.9	41	84	2	168	22	35	15	26	1.94
29109071--29109206	43	3.2	43	89	0	209	22	36	16	25	1.94
29109041--29109206	86	2.0	83	86	3	233	22	36	15	26	1.93
29110705--29110754	3	16.7	3	78	0	55	40	2	26	32	1.67
29110705--29110749	12	3.8	12	84	0	63	40	2	24	33	1.68
29123053--29123089	19	2.0	19	89	5	58	54	0	2	43	1.14
29123612--29123673	20	3.0	20	88	4	88	66	0	32	1	1.02
29123619--29123672	7	7.7	7	76	21	51	64	0	33	1	1.04
29130314--29130366	26	2.0	26	96	0	97	49	16	9	24	1.76
29132686--29132798	35	3.2	35	87	0	145	24	9	36	29	1.88
29142971--29143008	19	2.0	19	94	0	67	47	23	0	28	1.52
29146746--29146778	5	6.8	5	93	6	59	39	21	0	39	1.53
29146746--29146778	14	2.3	15	94	5	59	39	21	0	39	1.53
29146813--29146858	15	3.1	15	81	12	58	56	17	2	23	1.52
29152232--29152269	19	2.0	19	94	0	67	47	23	0	28	1.52
29155403--29155468	21	3.2	19	78	18	62	71	4	1	22	1.13
29155415--29155468	15	3.4	15	76	19	56	72	3	1	22	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29156314--29156395	21	3.6	21	73	20	65	37	17	7	37	1.77
29161094--29161141	25	1.9	25	83	8	62	0	29	6	64	1.18
29161346--29161506	74	2.2	74	80	6	175	22	21	14	40	1.89
29162230--29162269	21	2.0	20	85	5	53	35	15	10	40	1.80
29173797--29173857	25	2.5	24	84	7	70	19	18	13	49	1.79
29186596--29186625	5	6.0	5	96	0	51	40	23	0	36	1.55
29189140--29189192	28	1.9	27	88	11	81	30	18	15	35	1.92
29192749--29192819	33	2.2	33	92	0	115	39	21	7	32	1.80
29207986--29208179	35	5.5	35	78	2	199	35	9	12	42	1.75
29207986--29208179	107	1.8	106	86	1	280	35	9	12	42	1.75
29207961--29208179	35	6.3	34	76	8	185	35	8	13	43	1.74
29208401--29208454	27	2.0	27	96	0	99	20	22	12	44	1.85
29210470--29210747	140	2.0	139	98	0	538	45	6	3	44	1.47
29210982--29211837	252	3.4	251	86	2	1064	35	14	7	42	1.73
29215002--29215053	28	1.9	27	81	14	63	26	19	21	32	1.97
29215099--29215145	20	2.3	20	92	0	76	44	19	4	31	1.70
29217152--29217211	30	2.1	29	81	6	68	31	8	21	38	1.83
29225332--29225391	30	2.1	29	81	6	68	31	8	21	38	1.83
29233513--29233572	30	2.1	29	81	6	68	31	8	21	38	1.83
29241694--29241753	30	2.1	29	81	6	68	31	8	21	38	1.83
29249874--29249933	30	2.1	29	81	6	68	31	8	21	38	1.83
29258054--29258113	30	2.1	29	81	6	68	31	8	21	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29260683--29263181	251	9.9	252	83	3	2726	33	13	8	44	1.75
29260683--29263201	754	3.3	752	83	2	2914	33	13	8	44	1.75
29282549--29282583	18	2.0	17	94	5	61	34	22	0	42	1.54
29292513--29292890	91	4.0	92	80	9	376	22	22	4	50	1.67
29297353--29297516	61	2.7	61	89	0	256	29	29	15	25	1.96
29313602--29313642	15	2.7	15	88	7	57	53	17	2	26	1.56
29316230--29316267	19	2.0	19	89	0	58	42	26	0	31	1.56
29323483--29323512	3	10.0	3	92	0	51	63	0	36	0	0.95
29334478--29334502	13	1.9	13	100	0	50	12	8	16	64	1.49
29343829--29343990	71	2.3	71	86	0	216	38	21	18	20	1.93
29344597--29344744	34	4.3	34	84	6	183	25	12	26	35	1.91
29344613--29344744	69	1.9	68	84	4	176	28	12	26	33	1.92
29354302--29354389	22	3.7	23	70	24	65	22	23	27	26	2.00
29357913--29357961	24	2.0	26	92	8	84	0	28	2	69	1.00
29358282--29358312	3	10.0	3	93	6	53	32	3	0	64	1.09
29361073--29361112	2	20.0	2	89	0	62	50	2	0	47	1.14
29361367--29361397	2	15.5	2	100	0	62	48	0	0	51	1.00
29361779--29361815	19	1.9	19	94	0	65	27	32	27	13	1.94
29362638--29362679	20	2.1	20	86	0	57	23	2	7	66	1.28
29369488--29369532	16	2.9	16	93	3	74	20	2	0	77	0.87
29369486--29369602	9	13.9	9	80	13	117	24	2	0	72	0.97
29369486--29369602	6	20.8	6	86	6	117	24	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29369731--29369831	37	2.7	37	100	0	202	18	4	14	61	1.51
29371103--29371146	20	2.2	20	87	0	61	22	2	6	68	1.25
29388390--29388414	13	1.9	13	100	0	50	44	0	8	48	1.32
29396842--29397013	29	5.9	28	80	9	166	40	9	11	39	1.73
29396842--29397003	57	2.8	56	82	9	175	38	8	10	41	1.70
29397155--29397187	17	1.9	17	88	11	50	39	3	15	42	1.62
29398344--29398425	39	2.1	38	88	2	119	29	34	18	18	1.94
29398401--29398462	28	2.2	28	91	0	97	25	29	27	17	1.98
29409516--29409567	21	2.4	21	81	15	70	51	5	26	15	1.65
29410904--29410942	20	2.0	20	90	5	62	23	23	15	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106