genome.fa.s2.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  28  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11086457--11086481	2	12.5	2	100	0	50	52	0	0	48	1.00
11087373--11087568	38	5.2	38	85	1	250	24	13	18	43	1.86
11087373--11087598	38	5.9	37	82	5	220	24	13	18	43	1.86
11087373--11087598	75	3.0	75	83	3	274	24	13	18	43	1.86
11087770--11087802	11	3.1	11	91	4	50	78	0	21	0	0.75
11087915--11087942	2	14.0	2	100	0	56	50	0	50	0	1.00
11089202--11089236	14	2.6	13	86	8	52	74	0	2	22	0.95
11089315--11089355	19	2.2	19	86	8	57	78	0	2	19	0.87
11089446--11089532	27	3.0	27	71	8	66	68	0	6	24	1.13
11089466--11089521	12	4.3	13	74	14	53	71	0	5	23	1.06
11099011--11099100	45	2.0	45	100	0	180	31	15	11	42	1.82
11099694--11099761	29	2.3	28	80	14	75	33	2	0	63	1.10
11099738--11099771	17	2.0	17	88	11	52	38	0	0	61	0.96
11099820--11099885	30	2.2	31	83	2	80	54	1	4	39	1.30
11099854--11099915	21	3.2	20	72	23	60	56	1	6	35	1.35
11099867--11099935	16	4.0	16	77	17	66	59	0	5	34	1.21
11099841--11099935	37	2.5	37	86	5	129	57	1	5	35	1.28
11100423--11100476	3	18.0	3	86	7	74	62	0	35	1	1.06
11101117--11101151	15	2.4	15	90	4	54	31	0	0	68	0.90
11101276--11101333	19	2.9	19	80	14	64	39	0	5	55	1.22
11101547--11101582	17	2.2	16	95	5	63	44	0	0	55	0.99
11103622--11103681	29	2.1	30	84	6	79	30	13	6	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11122327--11122366	18	2.3	17	86	4	53	52	0	35	12	1.39
11122564--11122609	14	3.3	14	81	0	56	60	6	23	8	1.49
11122597--11122653	29	2.0	29	82	0	69	52	10	21	15	1.72
11122925--11123013	34	2.6	35	81	1	90	21	12	20	46	1.83
11123403--11123444	19	2.2	20	87	12	61	30	4	4	59	1.39
11132418--11132453	18	2.0	18	88	0	54	50	19	8	22	1.74
11147241--11147292	17	3.1	17	88	0	68	42	13	5	38	1.68
11151360--11151388	3	9.7	3	100	0	58	68	0	0	31	0.89
11153006--11153042	18	2.0	20	89	10	60	67	5	8	18	1.36
11154012--11154180	31	5.5	31	90	2	250	26	18	17	36	1.94
11154373--11154417	13	3.5	13	96	0	81	28	6	33	31	1.83
11157646--11157717	30	2.4	30	97	0	135	47	15	5	31	1.68
11158021--11158095	31	2.4	31	95	0	132	25	21	32	21	1.98
11157828--11158048	118	1.9	117	88	0	325	21	22	28	27	1.99
11157833--11158073	118	2.0	117	82	4	297	22	22	28	26	1.99
11158053--11158266	118	1.8	118	91	2	358	22	20	28	29	1.98
11159829--11159872	21	2.1	21	83	8	54	22	38	15	22	1.92
11161970--11162223	31	8.2	30	89	0	319	40	20	16	23	1.91
11161959--11162223	62	4.3	62	87	4	374	40	19	16	23	1.91
11161959--11162223	93	2.8	91	89	3	395	40	19	16	23	1.91
11162880--11163088	47	4.5	47	84	1	253	22	27	22	28	1.99
11163037--11163238	58	3.5	58	87	2	241	24	33	15	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11167292--11167324	17	2.1	16	88	11	50	0	30	0	69	0.88
11168236--11168289	19	2.7	19	80	13	56	51	0	1	46	1.11
11169728--11169764	15	2.5	15	80	20	51	54	0	0	45	1.00
11178328--11178358	11	2.8	11	90	0	53	0	12	0	87	0.55
11182561--11182599	17	2.3	17	86	0	51	64	2	33	0	1.08
11192690--11192776	37	2.4	37	82	0	93	34	17	13	34	1.89
11195840--11195902	24	2.7	24	87	2	83	31	14	6	47	1.69
11195911--11195945	17	2.1	17	88	0	52	42	14	8	34	1.76
11195480--11196494	517	2.0	515	83	4	1283	35	14	12	37	1.85
11198791--11198846	20	2.8	20	80	19	64	48	1	5	44	1.36
11201651--11201826	35	5.2	35	74	14	147	34	26	13	25	1.93
11201654--11201826	67	2.6	67	90	3	278	34	26	13	26	1.94
11202892--11202929	20	2.0	20	89	5	60	21	23	15	39	1.92
11203001--11203445	223	2.0	222	96	1	829	28	22	16	32	1.95
11203937--11204051	43	2.7	43	80	2	124	24	18	35	21	1.95
11205815--11205885	37	1.9	37	94	0	124	45	23	8	22	1.80
11215234--11215336	38	2.7	38	89	6	145	21	36	17	24	1.94
11227010--11227051	22	1.9	22	85	0	57	35	19	14	30	1.91
11240667--11240982	106	3.0	105	95	0	560	44	11	19	23	1.84
11253092--11253218	38	3.2	40	63	10	100	44	7	9	37	1.66
11253132--11253252	37	3.2	37	62	11	91	40	6	13	39	1.70
11253076--11253316	77	3.1	77	94	1	412	40	7	12	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11253114--11253234	40	3.1	40	62	11	106	41	7	10	40	1.68
11254187--11254243	19	3.0	19	76	16	64	42	1	8	47	1.45
11261186--11261226	20	2.1	20	86	4	57	17	29	24	29	1.97
11261759--11261890	42	3.1	42	79	2	140	26	33	18	21	1.96
11263430--11263470	20	2.1	19	86	4	55	36	2	26	34	1.70
11268979--11269011	16	2.0	17	88	5	50	45	3	0	51	1.16
11270947--11270993	22	2.1	23	84	11	62	51	19	4	25	1.65
11272858--11272922	28	2.4	27	77	10	71	29	3	7	60	1.40
11272865--11272904	12	3.1	13	89	10	64	30	0	7	62	1.23
11272856--11272915	27	2.2	26	83	16	70	25	1	6	66	1.25
11278433--11278479	22	2.1	23	84	11	62	48	19	6	25	1.72
11278765--11278802	15	2.6	15	88	12	53	63	0	0	36	0.95
11278829--11278871	17	2.5	17	92	7	70	55	2	6	34	1.39
11279171--11279293	50	2.5	50	82	6	135	56	7	5	30	1.50
11283314--11283370	31	1.9	31	85	7	82	31	7	0	61	1.23
11283633--11283680	2	24.0	2	100	0	96	50	0	0	50	1.00
11289320--11289374	27	2.0	27	92	0	92	41	14	14	29	1.85
11292156--11292184	2	14.5	2	100	0	58	48	0	0	51	1.00
11292195--11292228	17	2.0	17	100	0	68	41	23	11	23	1.87
11298972--11299043	37	2.0	36	100	0	135	40	19	11	27	1.85
11300261--11300293	10	3.0	11	86	13	50	63	0	30	6	1.18
11304248--11304284	11	3.5	11	88	3	58	62	18	2	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11304029--11304271	132	1.8	132	87	1	362	39	9	24	27	1.85
11304332--11304491	81	2.0	81	85	2	214	40	8	25	26	1.83
11305871--11305897	11	2.5	11	100	0	54	62	18	0	18	1.32
11312012--11312083	36	2.0	36	94	0	126	47	11	11	30	1.74
11314020--11314069	19	2.6	19	80	0	55	34	6	28	32	1.81
11319160--11319185	3	8.7	3	100	0	52	30	0	0	69	0.89
11329198--11329226	15	2.0	15	93	6	51	20	0	6	72	1.07
11337396--11337451	14	3.9	14	76	15	60	51	0	0	48	1.00
11337388--11337458	31	2.3	31	100	0	142	57	0	0	42	0.98
11337406--11337458	18	3.2	18	70	25	62	56	0	0	43	0.99
11337798--11337841	21	2.1	21	83	8	54	59	11	2	27	1.44
11338260--11338297	13	2.8	14	80	8	51	68	0	2	28	1.03
11338266--11338325	21	2.6	22	80	15	61	71	1	0	26	0.95
11339750--11339820	37	1.9	37	88	5	108	42	21	16	19	1.89
11340792--11340865	33	2.2	34	90	4	116	51	8	0	40	1.32
11340849--11340923	10	7.4	10	74	18	57	50	2	1	45	1.24
11340792--11340899	34	3.3	34	83	12	113	47	7	0	44	1.37
11340872--11340917	18	2.4	19	89	7	67	50	0	2	47	1.13
11340810--11340923	11	10.8	11	68	22	59	50	4	0	44	1.28
11340872--11340925	18	2.9	18	81	15	65	50	0	1	48	1.11
11361608--11361659	23	2.3	23	82	0	59	26	9	25	38	1.86
11361620--11361664	23	2.0	23	86	0	63	33	6	22	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11364582--11364749	78	2.2	78	86	0	228	18	23	17	40	1.91
11368006--11368399	118	3.4	118	86	3	516	44	26	11	17	1.83
11368667--11368741	9	8.3	9	80	0	87	41	18	9	30	1.82
11368667--11368741	18	4.2	18	91	0	123	41	18	9	30	1.82
11368675--11368741	27	2.5	27	87	0	98	41	17	8	31	1.81
11368737--11368826	20	4.7	20	68	15	64	57	2	0	40	1.11
11369011--11369074	18	3.6	18	86	0	92	46	18	12	21	1.82
11369031--11369074	8	4.9	9	81	18	56	47	20	13	18	1.82
11370616--11370740	26	5.1	26	62	14	86	40	20	11	27	1.86
11370586--11370740	48	3.2	48	87	0	229	39	23	12	25	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106