genome.fa.s2.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  26  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10448928--10448973	19	2.4	19	88	0	65	41	2	0	56	1.11
10450366--10451061	98	7.1	98	84	5	816	36	13	18	32	1.89
10450342--10451088	198	3.8	193	83	6	849	36	12	18	32	1.89
10451076--10451128	20	2.6	21	88	8	74	33	7	28	30	1.85
10450950--10451246	140	2.1	141	86	4	411	35	12	21	30	1.91
10451097--10451326	122	1.9	121	85	4	320	35	12	20	31	1.90
10451233--10451406	80	2.2	80	92	2	287	37	13	14	34	1.86
10451393--10451470	21	3.7	21	76	10	86	28	12	28	30	1.93
10454015--10454710	98	7.1	98	84	5	807	36	13	18	32	1.89
10453991--10454737	198	3.8	193	83	6	840	36	12	18	32	1.89
10454725--10454777	20	2.6	21	88	8	74	33	7	28	30	1.85
10454602--10454876	140	1.9	143	86	3	387	35	12	21	30	1.90
10454881--10455054	80	2.2	80	91	2	287	37	13	14	34	1.85
10455041--10455118	21	3.7	21	76	10	86	28	12	28	30	1.93
10461503--10461531	12	2.5	12	94	5	51	24	0	0	75	0.80
10461914--10461945	2	16.5	2	93	6	57	46	0	0	53	1.00
10463292--10463326	16	2.3	15	90	5	52	14	0	2	82	0.77
10475359--10475421	21	3.0	21	83	0	72	44	15	12	26	1.83
10475635--10475680	21	2.2	21	96	0	83	56	0	28	15	1.39
10485409--10485468	30	2.1	29	81	6	68	31	8	21	38	1.83
10490649--10490697	24	2.0	24	100	0	98	40	14	20	24	1.89
10502404--10502463	30	2.1	30	84	6	79	31	6	21	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507416--10507486	34	2.1	34	94	0	124	47	5	16	29	1.70
10516759--10516783	6	4.2	6	100	0	50	84	0	16	0	0.63
10525966--10526129	77	2.1	76	90	1	265	39	12	7	40	1.72
10529433--10529458	3	8.7	3	100	0	52	30	0	34	34	1.58
10539399--10539457	28	2.1	28	87	6	84	23	23	22	30	1.99
10547989--10548181	95	2.0	95	92	0	323	27	28	12	31	1.93
10548476--10548588	32	3.4	31	75	17	120	33	27	13	25	1.93
10548449--10548623	67	2.6	67	86	3	219	34	26	13	25	1.93
10548476--10548621	35	4.4	34	75	10	131	34	28	13	23	1.93
10549689--10549729	21	2.1	19	86	9	55	29	0	9	60	1.28
10551331--10551720	193	2.0	193	92	0	645	25	23	17	33	1.96
10555272--10555384	53	2.1	52	81	12	124	34	7	3	54	1.45
10559858--10561437	782	2.0	785	91	1	2560	30	16	14	37	1.89
10566605--10566737	2	69.0	2	83	15	165	50	0	2	46	1.13
10569477--10569532	29	2.0	29	82	3	69	37	3	16	42	1.65
10570386--10570436	10	4.9	10	92	2	66	19	0	0	80	0.71
10570597--10570650	27	2.0	27	82	7	65	24	16	0	59	1.37
10571398--10571436	16	2.3	17	82	13	53	30	0	2	66	1.05
10572158--10572239	34	2.4	34	85	4	121	37	46	8	7	1.62
10573072--10573113	23	1.9	23	85	9	61	47	0	0	52	1.00
10577008--10577504	249	2.0	249	88	1	737	38	13	18	30	1.89
10578252--10578346	48	2.0	48	93	0	163	27	25	11	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10580413--10580452	21	1.9	21	90	10	64	27	0	5	67	1.11
10581448--10581549	45	2.2	45	84	3	123	47	2	4	45	1.39
10582763--10582801	21	1.9	21	89	5	62	30	2	5	61	1.31
10590795--10590856	26	2.3	27	88	2	99	40	9	14	35	1.79
10601738--10601765	2	14.0	2	100	0	56	50	0	50	0	1.00
10607374--10607427	24	2.3	23	78	6	63	51	0	0	48	1.00
10610914--10610941	3	9.3	3	100	0	56	32	0	0	67	0.91
10613662--10613688	3	9.0	3	100	0	54	66	0	0	33	0.92
10621168--10621206	20	1.9	21	89	5	62	41	35	0	23	1.55
10627893--10627917	13	1.9	13	100	0	50	48	8	0	44	1.32
10629806--10629866	30	2.0	30	84	6	79	34	9	8	47	1.66
10630836--10630887	25	2.1	25	96	0	95	53	9	0	36	1.34
10633844--10633877	17	2.1	17	88	5	52	20	0	0	79	0.73
10633876--10634305	154	2.8	154	83	7	532	38	4	2	54	1.36
10634336--10634424	19	4.9	17	67	22	56	38	1	1	59	1.12
10634370--10634482	15	7.5	14	67	20	52	40	1	1	55	1.20
10634288--10634494	22	9.9	20	71	15	71	39	0	2	57	1.19
10634288--10634482	106	1.8	106	79	8	227	39	1	2	56	1.20
10643904--10643975	30	2.4	29	77	11	74	48	2	4	44	1.36
10643955--10643998	23	1.9	23	81	9	54	54	2	2	40	1.25
10644898--10644932	16	2.2	16	90	5	54	51	5	5	37	1.50
10645375--10645413	18	2.2	18	86	9	53	33	5	5	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10648927--10648965	10	3.8	10	86	6	60	51	17	2	28	1.59
10650224--10650270	24	1.9	25	86	4	69	44	0	4	51	1.21
10657852--10657883	3	10.7	3	93	0	55	37	34	28	0	1.57
10660745--10660786	2	21.0	2	85	0	57	42	0	7	50	1.30
10668584--10668832	42	6.1	42	66	12	108	54	4	1	39	1.29
10668801--10668856	28	2.0	28	82	6	69	67	1	0	30	1.01
10673157--10673523	130	2.9	127	79	9	384	30	13	13	43	1.81
10673152--10673530	128	3.0	125	79	9	413	30	12	13	43	1.81
10673777--10673820	22	2.0	21	82	4	52	34	9	6	50	1.61
10679074--10679171	31	3.2	31	80	0	133	33	6	8	52	1.56
10685552--10685619	35	2.1	31	86	10	91	57	5	14	22	1.59
10686316--10686358	22	1.9	23	85	4	61	60	0	2	37	1.10
10686316--10686376	29	2.1	30	79	14	74	60	1	3	34	1.23
10686320--10686383	18	3.6	18	71	12	51	60	1	3	34	1.22
10686986--10687212	90	2.5	91	82	5	255	30	11	44	12	1.78
10687990--10688096	15	7.1	15	70	16	62	71	3	5	18	1.20
10688055--10688096	14	2.9	14	83	13	50	73	4	0	21	1.01
10688410--10688460	26	2.0	26	84	7	68	70	1	5	21	1.18
10688442--10688467	11	2.4	11	100	0	52	73	0	0	26	0.84
10707309--10707687	189	2.0	190	86	3	532	44	9	11	34	1.73
10710757--10710815	9	6.6	9	75	14	50	52	5	33	8	1.54
10710769--10710841	27	2.7	27	75	14	69	52	6	32	8	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10720630--10720749	47	2.6	47	77	7	127	28	15	35	21	1.93
10720716--10720767	23	2.3	23	90	6	79	28	15	38	17	1.90
10720725--10720769	23	2.0	23	100	0	90	26	17	37	17	1.93
10720739--10720940	47	4.3	47	80	1	226	26	18	33	21	1.97
10720590--10720910	164	2.0	164	86	2	448	27	17	33	21	1.96
10720739--10720940	94	2.1	94	87	0	278	26	18	33	21	1.97
10720957--10721009	23	2.3	23	96	0	97	32	22	24	20	1.98
10720928--10721075	76	2.0	75	86	1	206	25	17	29	27	1.98
10721541--10721804	93	2.8	93	84	5	320	24	16	21	37	1.94
10721542--10721803	31	8.5	31	83	3	278	24	16	21	37	1.94
10723434--10723917	156	3.1	155	86	2	623	34	18	19	27	1.95
10724281--10724608	31	10.6	31	73	3	266	21	18	19	40	1.92
10724281--10724607	93	3.5	93	91	0	501	21	18	19	40	1.92
10726055--10726142	14	5.9	14	72	20	63	32	9	6	51	1.60
10727241--10727633	31	12.7	31	82	3	434	23	16	20	39	1.92
10731115--10731196	31	2.6	31	86	3	103	31	21	18	28	1.97
10731177--10731237	23	2.6	24	82	7	90	22	34	21	21	1.97
10731266--10731451	55	3.4	55	79	7	207	41	31	13	13	1.83
10733016--10733241	117	1.9	116	97	2	427	36	9	5	47	1.59
10733314--10733508	86	2.3	87	79	7	202	42	8	8	40	1.67
10735371--10735414	23	2.0	22	90	4	70	45	13	36	4	1.64
10735381--10735432	23	2.3	23	83	12	63	50	13	30	5	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10736617--10736643	14	1.9	14	100	0	54	44	0	37	18	1.50
10736582--10736704	62	2.0	62	98	0	237	31	13	27	27	1.93
10738160--10738199	22	1.9	20	85	10	53	47	10	27	15	1.77
10740044--10740104	32	1.9	32	89	0	95	18	19	6	55	1.63
10748337--10748394	31	1.9	30	82	10	73	67	1	3	27	1.17
10756804--10756852	24	2.0	24	84	0	62	8	38	12	40	1.72
10756987--10757034	24	2.0	24	87	0	69	39	22	16	20	1.92
10757046--10757095	24	2.1	24	92	0	82	28	18	30	24	1.97
10756978--10757112	63	2.1	63	83	0	171	32	20	28	19	1.96
10758707--10758757	26	2.0	26	92	0	84	21	13	3	60	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106