genome.fa.s2.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  82  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31112152--31112216	17	4.1	16	76	20	57	44	1	6	47	1.37
31112154--31112217	16	4.1	16	76	21	57	43	1	6	48	1.37
31112860--31112915	22	2.6	21	78	13	60	46	10	1	41	1.49
31120845--31120933	28	3.0	30	65	25	80	42	10	10	37	1.72
31120845--31120961	59	2.0	59	96	0	216	42	8	10	38	1.69
31120946--31121215	27	9.9	27	81	4	229	40	15	9	35	1.79
31121193--31121245	27	2.0	27	88	0	79	37	13	7	41	1.72
31122758--31122786	2	14.5	2	100	0	58	48	0	0	51	1.00
31123188--31123221	3	11.3	3	100	0	68	35	0	0	64	0.94
31123220--31123290	3	23.7	3	94	0	79	23	1	32	42	1.63
31124420--31124477	23	2.5	24	83	16	77	63	6	0	29	1.20
31126079--31126120	8	5.4	8	77	5	50	83	0	14	2	0.75
31134278--31134340	33	1.9	33	83	6	83	30	11	14	44	1.79
31137923--31137960	20	1.9	20	89	10	60	47	18	5	28	1.70
31142291--31142316	13	2.0	13	100	0	52	46	7	0	46	1.31
31151217--31151267	22	2.3	22	89	0	84	39	17	11	31	1.86
31153339--31153371	16	2.1	16	100	0	66	33	18	24	24	1.97
31155251--31155284	2	17.0	2	87	0	50	47	2	2	47	1.32
31160452--31160530	39	2.0	39	95	0	140	32	2	15	49	1.58
31171148--31171194	24	2.0	24	82	0	58	51	2	4	42	1.33
31172027--31172067	16	2.3	19	84	12	52	0	17	9	73	1.09
31172053--31172107	21	2.8	19	75	20	51	7	21	1	69	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31173352--31173391	20	1.9	20	85	10	53	67	2	10	20	1.31
31173365--31173414	24	2.0	24	84	7	64	72	4	6	18	1.22
31180868--31180920	2	26.5	2	100	0	106	50	0	0	49	1.00
31181181--31181224	21	2.1	21	82	0	52	20	22	22	34	1.97
31187149--31187217	35	1.9	35	85	2	93	21	15	27	34	1.94
31187142--31187233	35	2.6	35	75	6	87	26	13	26	34	1.92
31189723--31189771	22	2.3	22	89	3	73	34	20	12	32	1.90
31193132--31193174	2	21.5	2	87	0	59	0	44	4	51	1.22
31193133--31193174	12	3.5	12	90	0	66	0	42	4	52	1.22
31205975--31206054	39	2.1	39	97	0	151	51	10	3	35	1.53
31211067--31211324	41	5.9	42	69	21	156	53	1	1	43	1.19
31211127--31211212	27	3.1	27	93	1	136	52	3	0	44	1.18
31211067--31211356	41	6.4	44	69	19	145	52	1	1	44	1.18
31211251--31211359	15	7.3	15	69	30	65	49	0	1	48	1.11
31214714--31214779	29	2.3	29	89	2	107	28	33	0	37	1.58
31218244--31218305	31	2.0	31	87	0	88	33	22	3	40	1.70
31220279--31220321	7	6.0	7	79	15	52	16	2	0	81	0.79
31220839--31220999	72	2.2	73	85	1	207	37	22	16	22	1.93
31228700--31228763	2	32.0	2	87	0	92	50	6	0	43	1.27
31240392--31240420	2	14.5	2	100	0	58	0	0	48	51	1.00
31240811--31240858	25	1.9	25	91	0	78	64	2	16	16	1.39
31245941--31246021	42	1.9	42	94	0	144	20	22	34	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31246256--31246317	26	2.4	26	91	0	97	25	3	38	32	1.72
31254587--31254658	35	2.1	35	81	0	81	23	12	15	48	1.79
31262452--31262593	29	4.9	28	84	6	185	37	13	10	38	1.79
31262429--31262593	59	2.8	58	86	4	224	40	12	9	37	1.75
31262419--31262591	29	5.9	28	82	8	184	38	12	9	38	1.77
31266564--31266631	4	16.8	4	71	14	50	0	33	0	66	0.92
31266581--31266631	16	3.3	15	83	10	59	0	33	0	66	0.92
31305031--31305141	55	2.0	55	100	0	222	26	18	23	32	1.97
31306720--31306784	2	32.5	2	100	0	130	50	0	0	49	1.00
31310029--31310085	27	2.1	27	83	6	71	33	24	22	19	1.97
31313407--31313506	52	1.9	52	82	8	123	48	8	2	42	1.44
31325486--31325527	2	21.5	2	90	4	68	0	47	0	52	1.00
31325486--31325534	10	5.2	9	85	11	55	0	46	2	51	1.12
31326137--31326167	2	15.5	2	100	0	62	0	48	0	51	1.00
31329221--31329245	2	12.5	2	100	0	50	52	0	0	48	1.00
31336004--31336042	2	20.0	2	94	5	71	48	0	0	51	1.00
31343238--31343262	2	12.5	2	100	0	50	0	48	0	52	1.00
31350432--31350491	2	30.0	2	93	0	102	50	3	0	46	1.18
31353170--31353239	29	2.3	29	82	4	86	32	11	11	44	1.76
31353180--31353236	29	2.0	29	89	0	87	28	12	12	47	1.77
31358276--31358301	4	6.5	4	100	0	52	76	0	0	23	0.78
31376826--31376867	15	2.9	14	86	13	59	57	2	4	35	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31377193--31377254	28	2.2	28	85	0	88	37	1	9	51	1.45
31379186--31379324	72	1.9	71	88	0	197	32	22	17	28	1.96
31385586--31385887	161	1.9	161	91	1	498	28	19	9	42	1.82
31387303--31387342	19	2.0	20	95	4	73	30	0	27	42	1.56
31389709--31389790	32	2.6	32	100	0	164	32	6	10	50	1.62
31393852--31393909	20	2.8	20	80	12	64	62	12	0	25	1.30
31395297--31395324	2	14.0	2	100	0	56	50	0	0	50	1.00
31403678--31403739	29	2.2	28	82	8	72	50	14	17	17	1.79
31412101--31412148	25	1.9	25	86	0	69	29	18	16	35	1.93
31429914--31429940	2	13.5	2	100	0	54	48	0	0	51	1.00
31432659--31432709	2	25.5	2	100	0	102	49	0	0	50	1.00
31432793--31432858	2	33.5	2	90	3	107	45	1	1	51	1.19
31443898--31444066	53	3.2	53	85	1	223	28	11	23	36	1.90
31443898--31444095	53	3.7	54	80	9	194	28	13	21	36	1.91
31443898--31444099	106	1.9	105	82	7	248	28	13	21	37	1.91
31446883--31446928	19	2.4	19	88	0	65	2	17	4	76	1.06
31451625--31451681	29	2.0	29	85	0	78	17	21	10	50	1.75
31452051--31452186	64	2.1	64	83	2	175	22	23	6	47	1.74
31452073--31452202	64	2.0	64	85	5	174	23	23	6	46	1.75
31452596--31452631	17	2.1	17	94	0	63	27	2	22	47	1.65
31453175--31453310	47	3.0	46	80	7	143	34	4	17	43	1.69
31454491--31454529	15	2.5	16	87	4	53	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31454596--31454629	8	4.1	8	88	3	50	50	0	0	50	1.00
31454800--31454907	41	2.6	41	77	12	112	51	0	0	47	1.00
31454815--31454892	15	5.3	15	73	21	67	51	0	0	47	1.00
31454834--31454884	26	2.0	26	92	0	84	56	0	0	43	0.99
31456452--31456495	21	2.0	22	86	4	63	63	4	0	31	1.14
31457237--31457283	22	2.0	23	88	8	69	14	27	4	53	1.60
31461582--31461829	64	3.9	64	94	0	406	19	27	16	37	1.93
31462875--31462900	8	3.2	8	100	0	52	11	0	0	88	0.52
31466070--31466209	64	2.2	64	98	0	271	35	10	22	31	1.88
31472533--31472572	15	2.7	15	80	0	53	25	17	17	40	1.91
31475163--31475310	60	2.5	60	79	2	181	34	22	17	25	1.96
31496791--31496863	34	2.1	35	82	7	87	32	28	9	28	1.89
31497515--31497719	101	2.0	102	86	6	292	28	18	20	33	1.96
31498358--31498395	2	19.0	2	100	0	76	50	50	0	0	1.00
31499449--31499502	26	2.1	26	86	10	76	37	14	9	38	1.79
31503554--31503753	101	2.0	101	87	3	287	28	18	19	34	1.95
31505012--31505056	2	22.5	2	100	0	90	48	0	0	51	1.00
31505049--31505079	15	2.1	15	93	0	53	45	6	6	41	1.55
31511131--31511222	38	2.4	38	82	8	116	64	3	25	7	1.35
31511561--31511595	13	2.8	13	91	8	56	45	0	0	54	0.99
31511665--31511705	20	2.0	20	90	0	64	48	0	0	48	1.01
31513109--31513173	30	2.2	30	88	5	96	29	13	26	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31513190--31513262	34	2.1	35	80	12	89	28	13	23	34	1.93
31513199--31513264	34	1.9	34	87	6	98	25	15	22	36	1.93
31518795--31518859	30	2.2	30	94	0	112	24	15	27	32	1.95
31518910--31519015	33	3.1	34	76	12	101	33	14	20	31	1.92
31518930--31519016	35	2.6	34	76	10	88	34	14	19	31	1.92
31519475--31519528	21	2.6	21	90	0	81	37	14	11	37	1.82
31528597--31528623	2	13.5	2	100	0	54	51	0	0	48	1.00
31534607--31534631	13	1.9	13	100	0	50	48	8	0	44	1.32
31535839--31535876	20	1.9	20	88	0	58	47	18	2	31	1.62
31544570--31544617	19	2.5	20	74	19	55	58	0	6	35	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106