genome.fa.s2.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  80  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30455289--30455439	47	3.2	47	81	1	205	25	37	13	23	1.92
30455321--30455388	23	2.9	24	71	4	66	27	36	13	22	1.91
30455209--30455581	197	1.9	197	84	1	496	24	34	13	26	1.93
30455356--30455651	150	2.0	150	82	4	364	23	34	14	27	1.94
30455490--30455595	47	2.3	47	81	6	126	25	31	15	28	1.95
30455596--30455641	22	2.0	23	87	4	67	21	36	15	26	1.93
30455600--30455854	23	11.3	23	72	11	188	25	31	13	29	1.94
30455624--30455788	67	2.5	67	90	0	258	27	29	12	29	1.93
30455697--30455786	44	2.0	44	85	4	119	25	31	14	28	1.95
30455624--30455854	67	3.4	67	83	7	220	25	30	12	30	1.93
30455881--30455944	23	2.8	23	85	0	74	26	35	10	26	1.90
30455906--30455949	23	1.9	23	100	0	88	25	43	9	22	1.82
30465848--30465890	16	2.7	16	82	10	52	62	11	0	25	1.29
30468549--30468701	47	3.3	47	81	8	136	31	9	11	47	1.71
30468589--30468729	47	3.0	47	83	6	187	29	9	11	49	1.70
30469646--30469700	21	2.6	22	80	8	69	30	32	9	27	1.88
30469755--30469795	21	2.0	21	90	9	66	43	17	9	29	1.80
30477806--30477845	20	2.0	20	90	0	62	42	2	15	40	1.60
30479007--30479065	29	2.0	29	87	6	84	67	0	5	27	1.11
30481189--30481260	15	4.8	15	85	0	81	34	8	23	33	1.85
30481463--30481497	18	1.9	18	88	0	52	22	8	5	62	1.45
30482371--30482407	17	2.2	17	90	0	56	40	5	10	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30484229--30484266	16	2.4	16	95	0	67	18	31	15	34	1.92
30485897--30485943	3	15.7	3	95	0	85	31	2	0	65	1.04
30493813--30493839	9	3.0	9	100	0	54	55	0	0	44	0.99
30500548--30500594	18	2.6	19	80	9	55	21	0	6	72	1.07
30500732--30500830	33	3.1	33	69	16	98	51	16	10	22	1.73
30505908--30505945	20	1.9	20	100	0	76	28	5	21	44	1.73
30505999--30506056	28	2.1	27	81	12	73	31	22	22	24	1.99
30512093--30512130	20	1.9	20	94	0	67	44	18	5	31	1.72
30519947--30519984	20	1.9	20	100	0	76	44	21	5	28	1.73
30522939--30522986	19	2.6	19	83	3	62	39	4	0	56	1.19
30527882--30527974	47	2.0	47	93	0	159	31	21	15	32	1.94
30548003--30548039	19	1.9	19	94	0	65	29	2	29	37	1.71
30548205--30548265	31	2.1	29	81	9	70	29	8	22	39	1.83
30552610--30553018	204	2.0	203	97	0	773	35	21	11	30	1.89
30561673--30561718	20	2.3	20	92	0	74	30	4	19	45	1.70
30563555--30563585	2	15.5	2	100	0	62	48	0	0	51	1.00
30566343--30566380	20	2.0	20	85	10	53	31	23	13	31	1.93
30568550--30568620	27	2.6	27	88	4	97	22	22	22	32	1.98
30568650--30568758	26	4.2	26	80	0	110	33	19	11	36	1.87
30569249--30569273	11	2.3	11	100	0	50	76	0	8	16	1.02
30569585--30569627	21	2.0	22	86	4	61	44	0	0	55	0.99
30569776--30569818	15	2.9	15	78	0	50	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30570339--30570383	19	2.5	17	86	10	63	66	2	4	26	1.22
30570412--30570463	25	2.2	22	86	10	68	82	1	7	7	0.91
30570413--30570467	16	3.1	18	82	10	60	81	1	7	9	0.93
30572608--30574102	646	2.3	641	85	2	1992	44	9	11	34	1.73
30575991--30576090	50	2.0	50	96	0	182	43	7	11	39	1.67
30591044--30591132	2	45.5	2	75	20	73	43	3	1	50	1.26
30597782--30597835	25	2.1	25	83	13	65	9	12	24	53	1.68
30605338--30605549	98	2.2	98	82	6	259	34	13	18	32	1.90
30607108--30607148	15	2.7	15	84	3	55	31	7	4	56	1.48
30607978--30608016	13	3.1	13	96	3	71	15	0	38	46	1.46
30607978--30608016	6	6.2	6	88	11	60	15	0	38	46	1.46
30614008--30614074	32	2.1	33	86	8	93	25	2	7	64	1.34
30614193--30614264	36	2.0	36	91	0	117	22	4	33	40	1.73
30617584--30617621	19	2.0	19	89	0	58	31	0	26	42	1.56
30618997--30619021	13	1.9	13	100	0	50	44	0	8	48	1.32
30621395--30621431	15	2.5	15	86	4	58	64	0	35	0	0.94
30621402--30621442	18	2.3	18	86	0	55	68	0	29	2	1.03
30621545--30621604	27	2.3	26	82	2	75	40	3	43	13	1.60
30621825--30621867	16	2.7	16	82	7	52	44	2	4	48	1.36
30621878--30621926	21	2.3	21	86	6	64	48	2	6	42	1.39
30621819--30622464	344	1.9	347	87	3	962	44	7	6	41	1.59
30628459--30628502	20	2.2	20	91	0	70	47	18	4	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30629823--30629884	23	2.7	23	74	0	61	46	20	12	19	1.83
30638680--30638743	2	32.0	2	100	0	128	50	0	0	50	1.00
30641737--30641770	15	2.3	15	89	0	50	64	5	0	29	1.17
30643357--30643388	17	1.9	17	93	6	57	65	3	12	18	1.38
30643998--30644084	36	2.4	36	94	0	147	40	9	10	40	1.71
30644071--30644099	15	1.9	15	100	0	58	34	0	13	51	1.42
30644035--30644135	51	2.0	51	92	3	168	38	7	10	42	1.69
30644085--30644201	36	3.3	36	81	9	132	42	13	6	36	1.71
30644791--30644836	19	2.4	20	82	10	60	54	0	2	43	1.12
30652530--30652754	119	1.9	119	94	0	396	26	18	25	29	1.98
30665154--30665294	27	5.3	27	77	5	144	28	19	25	26	1.98
30668765--30668858	47	2.0	47	100	0	188	34	8	25	31	1.86
30668766--30668871	47	2.2	47	94	1	185	34	10	24	30	1.89
30674185--30674223	15	2.6	15	87	0	51	25	0	2	71	0.98
30674498--30674530	2	17.0	2	87	6	50	45	0	3	51	1.16
30675053--30675093	15	2.7	15	92	0	64	51	0	39	9	1.35
30675211--30675309	40	2.5	38	82	12	110	17	9	3	70	1.26
30676440--30676489	13	4.0	13	87	5	68	68	0	32	0	0.90
30676574--30676684	3	37.3	3	70	24	76	63	1	32	1	1.15
30676562--30676661	34	3.2	30	67	19	78	62	2	34	2	1.18
30676560--30676684	19	6.1	20	73	21	91	63	1	33	1	1.14
30676622--30676684	19	3.4	19	89	4	94	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30676560--30676664	33	3.2	31	71	18	97	61	1	34	1	1.18
30676574--30676675	48	2.2	46	79	8	111	63	1	32	1	1.16
30677413--30677650	61	3.9	60	85	3	307	25	16	31	26	1.96
30683809--30683973	69	2.4	70	86	7	221	60	3	35	1	1.23
30685090--30685140	15	3.8	13	75	17	50	62	9	1	25	1.36
30685621--30686562	470	2.0	469	97	0	1760	36	22	13	27	1.91
30687401--30687642	61	4.0	61	81	1	281	28	17	30	23	1.97
30687418--30687639	121	1.8	122	85	0	311	27	17	30	24	1.97
30692197--30692250	18	2.9	18	72	5	54	20	33	14	31	1.93
30692604--30692673	22	3.2	23	73	15	67	22	7	27	42	1.79
30693463--30693519	22	2.5	22	86	8	80	36	5	21	36	1.76
30693732--30693781	22	2.3	22	85	0	64	16	8	30	46	1.75
30697626--30697694	22	3.1	22	78	0	75	31	18	21	27	1.97
30699734--30699780	2	23.5	2	100	0	94	51	0	0	48	1.00
30702550--30702716	46	3.7	46	84	6	205	35	26	9	27	1.88
30702556--30702709	68	2.2	69	84	5	197	36	27	8	27	1.86
30702556--30702716	23	7.0	23	82	6	177	35	27	9	27	1.87
30705081--30705190	27	4.1	27	86	2	114	46	17	26	10	1.79
30706926--30706975	23	2.2	23	88	0	73	34	34	8	24	1.84
30706932--30706981	23	2.2	23	85	0	64	38	30	10	22	1.86
30709488--30709630	26	5.6	26	65	24	72	66	1	2	29	1.14
30709495--30709578	32	2.6	32	83	9	100	70	0	1	28	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30709488--30709573	6	13.7	6	71	9	64	72	0	1	26	0.92
30709792--30709852	15	4.1	15	84	0	68	36	14	3	45	1.62
30710227--30710260	17	2.1	16	88	5	50	70	0	2	26	1.01
30710227--30710260	16	2.1	17	89	10	54	70	0	2	26	1.01
30719888--30719948	32	1.9	32	86	0	86	29	11	21	37	1.88
30721032--30721091	30	2.1	29	81	6	68	31	5	21	41	1.75
30722228--30722252	13	1.9	13	100	0	50	44	0	8	48	1.32
30723451--30723496	15	3.1	15	87	0	65	26	2	17	54	1.54
30723531--30723563	5	6.8	5	93	6	59	39	0	21	39	1.53
30723531--30723563	14	2.3	15	94	5	59	39	0	21	39	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106