genome.fa.s2.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  88  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33537855--33537914	23	2.6	23	79	12	68	50	5	0	45	1.23
33537907--33537964	21	2.8	20	70	14	64	46	0	0	53	1.00
33537948--33538201	125	2.0	126	89	0	393	32	6	3	57	1.41
33540929--33540962	16	2.1	16	88	5	50	82	0	8	8	0.85
33541485--33541537	23	2.3	23	87	3	72	20	9	5	64	1.44
33546905--33547070	49	3.3	51	79	9	187	28	12	24	35	1.91
33547146--33547222	29	2.7	28	88	4	109	20	19	18	41	1.90
33547155--33547239	28	3.0	28	84	1	80	20	18	16	44	1.87
33547336--33547490	48	3.3	48	80	4	181	23	16	21	38	1.93
33551251--33551425	79	2.2	79	80	4	192	40	7	9	42	1.65
33552651--33552690	18	2.2	18	86	0	53	32	2	0	65	1.06
33554088--33554129	20	2.1	20	100	0	84	33	0	28	38	1.58
33560163--33560273	44	2.5	44	86	0	150	22	22	20	34	1.97
33560958--33560991	12	3.0	12	87	12	54	0	29	0	70	0.87
33560957--33560998	18	2.3	18	84	8	59	0	30	0	69	0.89
33567033--33567210	60	3.0	58	82	4	196	24	31	17	26	1.97
33567889--33567926	12	3.2	12	81	7	51	0	23	0	76	0.79
33567958--33567996	12	2.9	14	77	14	55	0	28	0	71	0.86
33570313--33570353	19	2.2	19	90	0	64	24	24	21	29	1.99
33574945--33574987	17	2.6	17	82	7	54	46	0	11	41	1.40
33594989--33595082	25	3.6	25	80	8	107	60	3	3	32	1.28
33594991--33595099	25	4.2	24	74	13	74	61	3	2	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33594994--33595108	53	2.2	53	84	6	144	60	3	3	33	1.31
33595334--33595379	2	23.5	2	95	4	85	50	0	0	50	1.00
33597835--33597874	18	2.2	18	90	4	62	45	0	0	55	0.99
33604393--33604513	39	3.2	39	82	7	140	24	28	13	33	1.93
33604405--33604513	36	2.9	39	80	8	116	26	28	13	31	1.94
33612087--33612150	31	2.1	31	93	0	110	51	15	17	15	1.77
33618513--33618541	15	1.9	15	100	0	58	34	10	20	34	1.87
33618755--33618841	33	2.6	33	79	1	102	27	4	1	66	1.18
33619900--33619996	45	2.2	45	83	12	137	47	1	4	47	1.28
33620034--33620107	23	3.3	22	71	14	69	52	4	1	41	1.28
33630671--33630714	21	2.1	21	91	4	72	27	4	9	59	1.48
33645616--33645668	20	2.7	20	93	0	88	35	24	15	24	1.94
33651855--33652010	62	2.5	62	93	4	264	44	8	24	21	1.81
33669785--33669834	2	25.0	2	100	0	100	50	0	0	50	1.00
33678283--33678336	24	2.3	24	87	3	74	38	1	14	44	1.56
33682729--33682771	17	2.4	18	84	7	61	39	11	4	44	1.62
33687703--33687740	20	1.9	20	100	0	76	28	5	21	44	1.73
33690668--33690715	2	24.0	2	100	0	96	50	0	0	50	1.00
33690972--33691099	66	1.9	66	87	0	184	28	25	14	32	1.94
33691626--33691653	14	2.0	14	100	0	56	50	7	7	35	1.57
33702451--33702496	24	2.0	23	82	4	56	63	6	8	21	1.46
33702718--33702836	35	3.4	35	96	0	211	35	10	16	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33727661--33727713	27	2.0	27	92	0	88	24	7	11	56	1.60
33731925--33732152	78	2.9	79	84	2	278	33	10	23	32	1.90
33731925--33732152	80	2.9	78	83	3	260	33	10	23	32	1.90
33734362--33734399	20	1.9	20	88	0	58	36	15	10	36	1.82
33738778--33738802	2	12.5	2	100	0	50	52	0	0	48	1.00
33741131--33741168	2	19.0	2	100	0	76	50	0	0	50	1.00
33747256--33747297	15	2.7	16	81	7	50	42	2	11	42	1.54
33750556--33750668	58	1.9	58	92	0	190	23	18	22	36	1.95
33752572--33752617	18	2.6	18	82	0	56	26	15	36	21	1.93
33761208--33761254	23	2.1	23	84	7	62	34	2	2	61	1.20
33761371--33761445	30	2.5	30	84	4	98	41	5	2	50	1.39
33770662--33770715	23	2.3	23	80	0	63	57	3	0	38	1.17
33781913--33781970	26	2.2	26	84	9	73	36	1	1	60	1.17
33782142--33782184	2	21.5	2	100	0	86	51	0	0	48	1.00
33782536--33782585	25	2.0	25	100	0	100	52	8	4	36	1.50
33782808--33782919	28	4.1	28	74	13	99	41	16	10	31	1.82
33796009--33796050	13	3.5	13	75	18	54	69	4	0	26	1.08
33802610--33802656	2	23.5	2	91	0	76	51	4	0	44	1.21
33803792--33803845	28	2.0	27	88	3	81	40	14	16	27	1.88
33810216--33810585	27	13.6	27	75	7	205	43	14	7	34	1.74
33810202--33810430	84	2.8	82	80	7	228	44	14	6	34	1.72
33810310--33810601	55	5.4	54	75	6	187	43	13	9	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33810196--33810617	82	5.2	80	77	6	276	43	15	7	33	1.75
33810312--33810539	109	2.1	109	84	1	296	42	14	9	33	1.77
33810502--33810603	27	3.9	25	80	6	96	45	13	7	33	1.73
33815242--33815271	15	2.0	15	93	0	51	40	6	36	16	1.75
33832772--33832800	14	2.1	14	100	0	58	20	10	20	48	1.79
33837034--33837089	27	2.1	27	93	0	94	7	17	14	60	1.55
33856452--33856638	51	3.6	51	75	5	189	25	19	14	40	1.90
33856636--33856687	23	2.3	23	79	0	59	25	26	13	34	1.93
33856736--33856770	18	1.9	18	94	0	61	28	20	14	37	1.91
33858248--33858411	54	3.0	54	95	0	292	39	8	7	43	1.64
33859147--33859269	35	3.5	35	81	0	138	44	17	13	24	1.85
33859147--33859282	70	1.9	70	81	0	164	44	16	14	25	1.85
33859480--33859573	29	3.3	29	73	4	84	15	25	6	52	1.67
33862705--33862855	41	3.9	40	77	6	159	29	12	17	40	1.87
33862837--33862871	18	1.9	18	88	0	52	20	8	28	42	1.81
33886919--33886956	15	2.5	15	84	16	51	42	0	2	55	1.14
33887728--33887832	56	1.9	55	82	5	133	42	15	13	28	1.84
33891866--33891903	19	2.0	19	94	0	67	28	0	28	42	1.56
33895448--33895556	45	2.5	43	79	7	112	45	3	4	45	1.41
33895453--33895546	45	2.1	45	85	0	125	44	4	5	45	1.45
33895584--33895697	22	5.1	22	69	12	70	47	2	6	43	1.42
33903554--33903711	80	2.0	81	91	3	257	27	23	8	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33903735--33903765	16	1.9	16	93	0	53	70	0	6	22	1.09
33903893--33903917	13	1.9	13	100	0	50	16	0	0	84	0.63
33904374--33904407	17	2.0	17	88	0	50	52	2	0	44	1.16
33905721--33905760	18	2.2	18	86	0	53	30	5	15	50	1.65
33915596--33915631	13	2.7	14	87	12	58	38	5	0	55	1.23
33915622--33915701	27	3.0	26	81	5	72	40	2	3	53	1.32
33915756--33915806	20	2.8	17	81	18	59	47	7	3	41	1.51
33915786--33915830	21	2.0	21	83	8	54	44	6	4	44	1.50
33915772--33915850	34	2.5	31	78	14	79	44	10	3	41	1.56
33916088--33916126	20	2.0	20	94	0	69	48	10	0	41	1.37
33916165--33916205	19	2.0	21	90	9	68	51	4	4	39	1.45
33916234--33916346	31	3.7	30	73	11	88	47	7	1	42	1.43
33925627--33925682	24	2.3	24	100	0	112	48	12	30	8	1.72
33932152--33932202	3	17.0	3	100	0	102	33	0	0	66	0.92
33933037--33933070	3	11.3	3	93	0	59	29	2	35	32	1.73
33939853--33939912	29	2.1	29	100	0	120	43	13	30	13	1.82
33945004--33945041	19	2.0	19	100	0	76	47	10	15	26	1.78
33945174--33945234	27	2.3	27	91	8	99	32	13	11	42	1.79
33945304--33945436	69	1.9	69	90	3	214	34	12	13	39	1.82
33946293--33946392	39	2.6	39	81	0	119	26	33	15	26	1.95
33947512--33947552	20	2.1	19	86	13	57	0	34	0	65	0.93
33947524--33947555	15	2.1	16	94	5	57	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33962351--33962624	101	2.7	100	86	3	381	39	13	13	33	1.84
33963174--33963233	31	1.9	31	89	0	93	33	11	3	51	1.55
33966191--33966215	13	1.9	13	100	0	50	36	24	0	40	1.55
33984746--33984798	15	3.5	15	89	2	79	52	0	5	41	1.25
33984746--33984850	30	3.4	30	75	16	88	56	0	4	39	1.21
33985011--33985099	32	2.8	31	80	11	99	28	2	0	69	1.00
33985014--33985211	38	4.9	38	72	17	107	29	4	0	66	1.10
33985014--33985100	19	4.5	19	75	11	72	26	2	0	71	0.98
33985083--33985156	24	3.0	24	78	4	76	27	5	0	67	1.12
33985011--33985185	33	5.5	33	65	24	81	29	4	0	66	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106