genome.fa.s2.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  87  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33120863--33121036	54	3.2	54	85	2	224	36	22	20	20	1.95
33124436--33124473	19	2.0	19	94	0	67	42	28	0	28	1.56
33124919--33124959	20	2.0	20	95	0	73	41	0	9	48	1.36
33131512--33131630	50	2.4	48	79	9	123	36	18	12	31	1.88
33132238--33132405	72	2.3	72	86	2	221	24	18	15	41	1.89
33134949--33134981	15	2.1	16	88	5	50	39	6	9	45	1.61
33135429--33135467	18	2.2	18	95	0	69	35	2	10	51	1.50
33139681--33139719	17	2.5	15	84	12	51	58	5	0	35	1.20
33144265--33144481	74	3.0	74	79	5	217	41	17	19	22	1.91
33144875--33144984	35	3.2	34	77	12	118	28	10	26	34	1.90
33144909--33145003	35	2.9	32	73	18	95	26	9	26	37	1.87
33144877--33145042	67	2.5	67	84	0	215	27	12	24	34	1.92
33146994--33147115	43	2.8	42	80	2	127	24	17	38	19	1.93
33147111--33147165	23	2.4	23	90	0	92	27	3	41	27	1.72
33156912--33156962	21	2.4	21	96	0	93	45	25	7	21	1.79
33161294--33161328	2	18.0	2	94	5	63	48	0	0	51	1.00
33162816--33162874	19	3.0	20	74	16	61	50	1	0	47	1.11
33167703--33167752	18	2.8	18	75	0	55	60	2	0	38	1.09
33167725--33167758	15	2.2	16	90	10	54	58	2	0	38	1.13
33178449--33178486	18	2.1	18	90	0	58	28	2	15	52	1.56
33180108--33180163	28	2.0	29	92	3	96	64	1	25	8	1.32
33180259--33180291	7	4.9	7	85	7	50	84	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33180550--33180637	44	2.0	45	84	8	117	47	6	0	45	1.29
33180763--33180796	17	1.9	17	88	5	50	67	0	5	26	1.13
33180762--33180808	18	2.7	18	80	3	60	63	2	6	27	1.30
33203323--33203364	20	2.0	21	90	4	68	30	7	19	42	1.78
33205511--33205570	30	2.1	30	81	6	70	33	5	20	41	1.74
33206717--33206754	17	2.2	17	95	0	67	57	0	7	34	1.28
33207230--33207650	213	2.0	210	97	1	781	25	13	20	40	1.89
33211291--33211315	3	8.3	3	100	0	50	32	0	0	68	0.90
33220618--33220714	5	20.6	5	82	12	57	25	0	0	74	0.82
33220619--33220656	9	4.3	9	83	6	51	15	0	0	84	0.63
33220617--33220656	13	3.1	13	85	0	53	15	0	0	85	0.61
33220633--33220714	5	18.8	4	80	14	67	29	0	0	70	0.87
33220623--33220714	9	9.9	9	80	13	89	27	0	0	72	0.84
33220639--33220714	30	2.6	29	87	4	109	30	0	0	69	0.88
33232507--33232536	6	5.0	6	100	0	60	0	33	33	33	1.58
33236838--33236878	20	2.0	20	100	0	82	24	26	4	43	1.74
33236993--33237035	17	2.6	16	78	10	50	25	0	11	62	1.29
33249295--33249333	2	19.5	2	83	0	51	46	2	5	46	1.38
33252684--33252717	2	17.0	2	100	0	68	0	50	0	50	1.00
33252761--33252789	2	14.5	2	100	0	58	0	51	0	48	1.00
33252952--33253008	30	1.9	30	85	0	78	40	1	3	54	1.28
33253072--33253137	33	2.0	33	87	0	96	45	3	12	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33263771--33263877	34	3.1	34	80	5	126	39	29	12	18	1.87
33267620--33267667	24	2.0	25	87	4	71	77	2	12	8	1.08
33271894--33271993	36	2.8	36	83	1	103	21	28	19	32	1.97
33271905--33271993	36	2.5	35	83	1	106	21	30	16	31	1.96
33275140--33275187	24	2.0	23	84	11	62	41	4	2	52	1.32
33275577--33275717	72	1.9	73	81	1	167	48	4	15	31	1.66
33280616--33280641	3	8.7	3	100	0	52	34	65	0	0	0.93
33289362--33289411	3	16.7	3	100	0	100	34	0	0	66	0.92
33294613--33294658	20	2.2	21	78	14	51	71	0	28	0	0.86
33297408--33297438	2	15.5	2	100	0	62	48	0	0	51	1.00
33307421--33307453	5	6.6	5	86	13	50	18	0	0	81	0.68
33308484--33308522	17	2.3	16	86	8	51	53	0	0	46	1.00
33320140--33320178	9	4.3	9	84	12	53	46	20	7	25	1.77
33320140--33320178	18	2.2	18	90	0	60	46	20	7	25	1.77
33320383--33320431	18	2.7	19	84	6	66	44	18	8	28	1.78
33320634--33320704	26	2.7	26	91	0	106	52	11	26	9	1.68
33327155--33327252	49	2.0	50	88	6	146	47	10	29	12	1.74
33332698--33332748	26	2.0	26	84	7	68	23	25	15	35	1.94
33332711--33332808	51	1.9	51	83	4	126	30	15	12	41	1.83
33333348--33333373	12	2.2	12	100	0	52	26	15	34	23	1.94
33344624--33344662	17	2.3	17	86	8	53	76	0	5	17	0.96
33345109--33345160	14	3.6	14	72	10	50	73	1	3	21	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33345426--33345481	22	2.5	22	77	11	60	67	0	10	21	1.20
33347017--33347054	14	2.5	15	83	12	51	84	0	2	13	0.73
33352431--33352590	81	2.0	80	83	3	205	55	8	23	12	1.65
33353800--33353842	21	2.1	21	91	4	70	20	27	18	32	1.96
33353752--33354143	142	2.8	142	89	1	588	26	24	15	34	1.94
33354180--33354318	38	3.7	37	82	9	165	25	14	15	45	1.83
33355772--33355810	17	2.3	17	86	8	53	76	0	5	17	0.96
33356246--33356326	14	5.7	14	72	7	65	66	2	3	27	1.21
33356555--33356627	27	2.6	27	82	6	83	69	0	8	21	1.14
33356576--33356649	12	6.0	12	74	21	64	70	0	4	25	1.05
33356610--33356648	8	4.9	8	81	12	53	71	0	0	28	0.86
33370702--33370733	7	4.6	7	96	0	55	3	28	0	68	1.04
33372097--33372125	15	1.9	15	100	0	58	6	37	6	48	1.57
33377212--33377392	100	1.8	101	87	1	274	37	22	13	27	1.91
33380507--33380593	43	2.0	43	97	0	165	37	14	11	35	1.83
33397816--33397871	27	2.1	27	89	0	85	32	21	16	30	1.95
33398250--33398533	96	3.0	96	94	1	489	44	11	5	38	1.64
33398250--33398531	95	3.0	95	94	0	483	44	11	5	38	1.64
33402375--33402584	102	2.1	102	93	0	357	44	14	22	18	1.86
33407369--33407415	16	2.8	17	77	9	51	38	0	4	57	1.18
33407787--33407860	38	1.9	38	88	0	112	31	22	10	35	1.89
33410248--33410562	82	3.9	82	92	1	487	42	10	7	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33410505--33410947	55	8.1	51	71	20	278	41	6	6	44	1.58
33410528--33410963	109	4.0	109	100	0	872	42	6	7	44	1.58
33411165--33411204	17	2.4	17	95	0	71	30	7	30	32	1.85
33411241--33411319	23	3.4	22	82	7	86	36	16	25	21	1.94
33411251--33411320	23	2.9	24	89	4	97	34	15	25	24	1.95
33411306--33411524	49	4.4	49	90	1	339	31	18	26	23	1.98
33418672--33418859	62	3.1	61	83	10	253	51	13	15	19	1.76
33418733--33418841	55	2.0	54	90	1	173	51	13	14	20	1.76
33419226--33419436	36	5.7	35	75	15	192	36	20	18	24	1.95
33419262--33419470	40	5.5	39	76	17	188	38	18	19	23	1.93
33419218--33419470	76	3.3	76	89	1	384	37	18	18	24	1.93
33420387--33420503	61	1.9	61	91	0	189	33	16	7	42	1.76
33420387--33420493	28	3.6	28	77	11	115	31	16	7	43	1.76
33420851--33421137	82	3.5	81	92	0	468	41	10	7	40	1.67
33421405--33421470	18	3.8	18	78	6	73	34	10	25	28	1.89
33421412--33421470	17	3.4	17	81	4	73	33	10	27	28	1.89
33421507--33421559	23	2.3	23	90	0	79	35	18	26	18	1.95
33421565--33421827	49	5.5	49	86	8	362	31	18	25	24	1.97
33421567--33421827	91	2.8	93	88	7	366	32	18	25	24	1.97
33421965--33422009	2	22.0	2	95	4	81	48	0	2	48	1.13
33423930--33423977	23	2.1	23	88	0	69	27	6	37	29	1.81
33428258--33428368	53	2.1	54	81	3	125	45	14	11	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33428505--33428593	26	3.5	25	71	11	74	41	11	12	34	1.78
33432646--33432721	37	2.1	37	97	0	143	38	13	14	34	1.85
33439087--33439158	38	1.9	36	83	10	92	33	26	13	26	1.94
33463480--33463564	36	2.4	36	100	0	170	29	45	10	14	1.78
33465558--33465645	2	43.5	2	83	10	108	44	0	5	48	1.26
33465680--33465801	37	3.3	38	85	5	169	30	9	35	25	1.87
33487950--33488115	82	2.0	80	96	2	305	47	9	21	22	1.78
33488584--33488616	3	11.3	3	87	6	50	66	0	3	30	1.06
33492418--33492456	2	19.5	2	100	0	78	48	0	0	51	1.00
33500811--33500844	2	17.0	2	100	0	68	0	50	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106