genome.fa.s2.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  30  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11746785--11747188	94	4.3	94	81	3	438	28	16	31	23	1.96
11746842--11747188	47	7.4	47	79	4	351	28	16	31	22	1.96
11746842--11746904	24	2.7	24	77	2	65	31	15	31	20	1.94
11746842--11747181	187	1.8	188	86	1	495	29	16	31	22	1.96
11747712--11747905	31	6.3	31	84	0	244	23	15	23	37	1.93
11747712--11747942	62	3.7	61	81	6	252	25	16	22	35	1.94
11747712--11747942	31	7.5	31	79	3	216	25	16	22	35	1.94
11747712--11747932	93	2.4	93	80	6	243	24	15	23	36	1.94
11749566--11750033	156	3.0	155	86	2	618	33	18	19	28	1.95
11750398--11750696	31	9.6	31	76	3	262	21	20	19	39	1.93
11750398--11750662	93	2.8	93	87	1	334	20	20	19	39	1.93
11752175--11752238	14	4.4	14	77	11	65	32	12	6	48	1.66
11752259--11752299	13	2.8	15	78	17	50	43	14	0	41	1.45
11753276--11753542	31	8.6	31	80	4	216	25	15	20	38	1.91
11753274--11753542	62	4.3	62	80	6	276	25	15	20	38	1.92
11753274--11753542	93	2.9	92	82	6	301	25	15	20	38	1.92
11757023--11757104	31	2.6	31	86	3	103	32	20	18	28	1.96
11757085--11757156	23	3.1	23	84	6	101	22	31	20	25	1.98
11757185--11757361	55	3.2	54	76	7	187	41	32	12	12	1.81
11758358--11758394	16	2.3	17	86	9	51	21	0	5	72	1.04
11770071--11770103	16	2.1	16	88	5	50	48	6	21	24	1.72
11772473--11772498	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11780573--11780610	16	2.4	17	86	13	62	47	15	7	28	1.74
11780581--11780612	16	2.0	16	100	0	64	50	12	6	31	1.65
11783042--11783085	2	22.0	2	95	0	79	0	47	0	52	1.00
11788430--11788454	4	6.2	4	100	0	50	24	0	0	76	0.80
11790598--11790636	17	2.4	16	87	8	53	51	0	10	38	1.36
11790876--11790908	16	2.0	17	88	5	50	27	15	0	57	1.38
11790812--11791021	108	1.9	108	90	1	332	37	13	3	45	1.62
11793205--11793242	20	1.9	20	94	0	67	26	5	23	44	1.74
11797985--11798030	20	2.3	20	96	0	83	45	21	4	28	1.71
11799780--11799816	19	1.9	19	88	0	56	45	0	5	48	1.25
11801171--11801213	18	2.4	18	84	3	61	72	2	0	25	0.97
11803818--11803931	14	8.2	15	69	21	79	44	0	1	53	1.10
11803818--11803907	25	3.4	25	84	9	110	44	0	1	54	1.07
11805519--11805591	13	5.9	12	75	16	69	76	1	1	20	0.93
11805518--11805601	23	3.8	20	76	20	71	75	1	1	22	0.95
11805518--11805600	21	3.8	21	79	7	85	75	1	1	21	0.93
11805535--11805592	8	7.2	8	77	15	50	74	1	1	22	1.01
11812124--11812152	5	5.8	5	100	0	58	37	0	62	0	0.96
11818460--11818502	19	2.3	19	88	11	63	11	32	9	46	1.72
11819285--11819426	42	3.4	42	81	3	178	23	21	35	19	1.96
11819284--11819438	84	1.8	84	83	2	204	23	20	35	20	1.96
11819933--11819972	19	2.1	19	90	0	62	30	30	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11822912--11822944	13	2.5	13	85	14	50	81	0	18	0	0.68
11822916--11822940	10	2.5	10	100	0	50	88	0	12	0	0.53
11823038--11823105	14	5.0	14	74	18	63	66	0	33	0	0.92
11825749--11825925	98	1.8	98	84	7	243	27	19	12	40	1.87
11833751--11833794	22	2.0	22	86	0	61	40	20	6	31	1.79
11837701--11837785	42	2.0	42	100	0	170	35	14	11	38	1.82
11843367--11843571	100	2.0	100	91	0	329	27	22	24	25	2.00
11844819--11844883	22	3.0	22	81	0	76	18	13	26	41	1.88
11845056--11845245	22	8.6	22	78	1	164	46	15	8	29	1.75
11845023--11845227	111	1.8	111	92	0	347	45	15	8	30	1.75
11846937--11846978	10	4.4	10	82	11	61	47	0	0	52	1.00
11847228--11847281	26	2.1	26	82	6	65	48	0	5	46	1.25
11848115--11848197	43	1.9	44	85	2	114	19	13	27	39	1.89
11848115--11848202	22	4.1	21	82	4	95	19	12	26	42	1.86
11848335--11848391	22	2.6	21	78	8	60	43	14	12	29	1.81
11848344--11848394	22	2.3	23	82	6	68	45	13	11	29	1.79
11852040--11852126	33	2.6	34	85	3	113	28	4	0	66	1.11
11863622--11863668	21	2.2	21	84	3	58	34	25	17	23	1.96
11867595--11867634	13	3.0	13	85	14	55	52	0	0	47	1.00
11875763--11875874	55	2.0	55	87	0	161	51	11	12	24	1.72
11875996--11876048	10	5.2	10	76	13	54	83	0	16	0	0.66
11876001--11876047	5	9.2	5	77	13	51	82	0	17	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11875996--11876048	17	3.2	17	82	15	67	83	0	16	0	0.66
11876004--11876048	16	2.9	15	80	12	56	84	0	15	0	0.62
11876072--11876107	16	2.3	15	86	9	54	63	0	22	13	1.29
11876125--11876176	18	2.9	18	85	0	77	80	0	19	0	0.71
11876125--11876189	9	6.8	10	75	18	50	80	0	20	0	0.72
11876142--11876190	22	2.2	21	86	10	71	81	0	18	0	0.69
11878424--11878478	22	2.5	22	72	0	56	45	5	12	36	1.66
11883848--11883902	16	3.3	17	78	16	62	80	1	18	0	0.81
11883852--11883891	20	2.0	21	90	5	64	77	0	22	0	0.77
11898302--11898346	2	22.5	2	95	0	81	53	0	0	46	1.00
11916448--11916528	41	2.0	41	92	2	137	24	12	7	55	1.62
11935278--11935321	22	2.0	21	86	9	52	31	4	15	47	1.66
11937553--11937598	22	2.1	22	100	0	92	26	4	8	60	1.44
11939622--11939681	25	2.5	24	81	10	77	15	8	13	63	1.51
11970506--11970561	22	2.6	22	91	5	80	32	17	30	19	1.95
11970513--11970561	22	2.3	22	96	3	91	32	18	26	22	1.97
11970904--11970960	21	2.8	20	77	15	55	26	0	10	63	1.27
11981979--11982050	37	2.0	37	86	2	101	34	19	11	34	1.87
11982633--11982663	15	2.1	15	94	5	55	12	6	19	61	1.53
11986374--11986435	24	2.7	23	85	7	83	38	0	0	61	0.96
11986367--11986441	28	2.6	28	75	21	84	36	0	0	64	0.94
11986394--11986447	17	3.0	17	75	8	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11986837--11986877	17	2.4	18	84	12	59	48	0	4	46	1.23
11987993--11988017	1	25.0	1	100	0	50	0	0	0	100	0.00
11997649--11997715	21	3.2	21	67	12	57	17	10	5	65	1.43
12010507--12010546	2	20.5	2	94	5	73	50	0	0	50	1.00
12017307--12017369	32	2.0	32	84	6	83	30	38	4	26	1.77
12018324--12018358	16	2.3	16	90	9	56	5	11	5	77	1.12
12018363--12018435	18	4.2	17	75	20	64	2	21	0	75	0.93
12018391--12018438	17	2.8	18	78	12	57	0	20	0	79	0.74
12018397--12018440	14	3.2	13	87	6	52	0	18	0	81	0.68
12019295--12019324	13	2.4	13	94	5	53	20	6	0	73	1.05
12019313--12019374	28	2.2	29	97	2	117	37	3	3	56	1.32
12036181--12036242	32	2.0	32	84	9	83	20	27	22	29	1.99
12037101--12037191	33	2.7	33	74	1	92	39	19	5	35	1.75
12038796--12038853	14	3.9	14	71	10	53	46	1	1	50	1.22
12060170--12060216	21	2.2	21	100	0	94	29	8	34	27	1.87
12062497--12062543	23	2.0	23	84	8	60	23	23	14	38	1.92
12062518--12062625	28	4.0	28	80	9	100	26	22	11	39	1.87
12062547--12062623	25	3.0	25	84	5	91	27	20	11	40	1.87
12063727--12063793	21	3.2	21	72	16	75	50	4	1	43	1.31
12070800--12070842	20	2.2	20	86	0	59	23	2	6	67	1.27
12071942--12071968	14	1.9	14	100	0	54	29	0	11	59	1.32
12078185--12078227	20	2.2	20	83	8	52	23	4	6	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12082615--12082661	14	3.5	13	75	13	51	4	19	2	74	1.09
12083199--12083236	20	1.9	20	88	0	58	18	10	10	60	1.57
12083861--12083904	18	2.4	18	85	11	54	79	0	15	4	0.89
12083858--12083904	22	2.1	22	84	7	60	80	0	14	4	0.85
12085693--12085719	14	1.9	14	100	0	54	29	0	11	59	1.32
12087268--12087341	37	2.0	37	97	2	132	10	32	8	47	1.68
12087539--12087577	10	3.8	10	80	6	51	28	0	20	51	1.48
12095288--12095326	10	3.8	10	80	6	51	25	2	20	51	1.60
12107271--12107324	20	2.8	19	80	8	56	57	12	0	29	1.36
12114215--12114254	5	8.0	5	91	0	62	40	0	22	37	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106