genome.fa.s2.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  46  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17347841--17347891	22	2.3	21	80	12	50	52	1	0	45	1.12
17353562--17353610	22	2.2	22	85	0	71	16	10	22	51	1.74
17353608--17353715	50	2.2	50	98	0	207	25	15	16	42	1.88
17366969--17367007	13	2.9	13	80	3	51	35	5	17	41	1.72
17369520--17369544	4	6.2	4	100	0	50	24	0	0	76	0.80
17373749--17373811	33	1.9	33	90	0	99	17	17	33	31	1.93
17374525--17374562	20	1.9	20	88	0	58	36	21	10	31	1.87
17385373--17385469	2	50.0	2	85	6	137	52	1	0	45	1.07
17392300--17392388	37	2.4	36	87	5	117	23	38	11	26	1.89
17392317--17392388	37	1.9	37	94	0	126	23	38	12	25	1.90
17393110--17393180	34	2.1	34	97	0	133	23	19	4	52	1.64
17397065--17397144	25	3.0	26	82	12	92	25	28	21	25	1.99
17400650--17400709	25	2.4	25	100	0	120	46	16	10	26	1.78
17402254--17402301	18	2.8	16	81	12	51	18	6	4	70	1.25
17404429--17404485	19	3.1	18	87	2	78	14	35	8	42	1.76
17405238--17405288	2	25.5	2	100	0	102	49	0	0	50	1.00
17405405--17405542	38	3.6	38	88	2	186	23	18	38	18	1.93
17405427--17405491	19	3.4	19	68	8	60	29	20	32	18	1.96
17413581--17413640	20	3.0	20	80	7	70	53	0	6	40	1.27
17418609--17418733	36	3.2	36	69	22	99	26	36	14	22	1.92
17419123--17419187	28	2.3	28	89	5	96	30	18	24	26	1.98
17424736--17424763	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17427857--17427890	7	4.9	7	88	0	50	73	0	26	0	0.83
17427854--17427890	14	2.6	14	82	0	56	75	0	24	0	0.80
17431702--17431755	28	2.0	28	81	3	65	33	14	20	31	1.93
17442877--17442926	26	2.0	26	84	4	66	30	30	2	38	1.69
17442920--17443084	68	2.4	68	91	0	267	30	21	9	38	1.85
17442855--17443099	68	3.6	68	82	1	242	30	22	9	37	1.86
17446997--17447034	16	2.2	19	86	13	55	26	2	26	44	1.67
17447082--17447127	23	2.0	22	83	12	56	52	0	21	26	1.47
17447801--17447919	43	2.8	43	93	0	202	24	15	36	22	1.94
17452078--17452117	18	2.2	19	95	4	73	50	0	0	50	1.00
17452697--17452785	46	1.9	46	82	8	110	61	6	30	1	1.29
17452978--17453064	36	2.5	35	85	5	113	22	11	29	35	1.90
17452926--17453101	92	1.9	92	88	2	264	22	10	28	38	1.87
17452927--17453144	92	2.4	92	81	6	219	25	10	27	37	1.88
17454324--17454369	20	2.2	21	85	14	69	30	0	23	45	1.53
17454366--17454493	43	2.9	42	87	8	166	25	17	35	21	1.95
17455639--17455703	33	2.0	33	90	0	103	36	4	16	41	1.70
17465622--17465687	33	2.0	34	90	3	107	45	6	12	36	1.66
17469175--17469199	7	3.6	7	100	0	50	0	0	12	88	0.53
17480716--17480787	35	2.2	35	78	16	82	36	11	5	47	1.63
17482022--17482052	15	2.0	15	93	6	53	74	0	0	25	0.82
17482329--17482357	13	2.1	14	93	6	51	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17482331--17482375	16	3.0	15	84	15	58	73	0	24	2	0.95
17482958--17483063	56	1.9	55	100	0	203	30	4	23	40	1.75
17486634--17486837	73	2.8	73	81	4	207	40	17	18	24	1.91
17493898--17494098	43	4.7	43	93	1	314	20	37	19	21	1.94
17498483--17498683	73	2.7	71	78	7	188	39	15	19	25	1.91
17499095--17499163	34	2.0	34	83	5	86	27	15	26	30	1.96
17520797--17520844	23	2.1	23	81	14	55	60	8	14	16	1.57
17520722--17522362	743	2.2	742	87	3	2354	43	14	12	29	1.82
17523660--17523699	2	20.0	2	100	0	80	0	0	50	50	1.00
17523760--17523801	2	21.0	2	100	0	84	0	0	50	50	1.00
17523912--17524014	38	2.6	40	87	3	138	22	19	37	20	1.94
17526788--17526935	73	2.0	73	96	0	269	37	14	17	30	1.90
17535478--17535519	19	2.2	19	95	0	75	16	38	9	35	1.81
17536137--17536216	42	1.9	42	86	0	115	26	11	35	27	1.90
17536546--17536598	22	2.4	22	75	6	54	41	1	0	56	1.10
17538174--17538230	11	5.5	11	76	16	68	0	33	0	66	0.92
17538177--17538230	20	2.7	20	100	0	108	0	35	0	64	0.94
17538156--17538232	13	5.5	15	75	21	62	0	36	0	63	0.95
17541052--17541091	21	1.9	21	90	10	64	35	22	10	32	1.87
17549009--17549090	41	2.0	41	81	9	96	35	3	19	41	1.69
17549810--17549888	29	2.7	29	98	2	149	55	2	3	37	1.31
17550572--17550771	55	3.6	55	83	2	204	12	13	32	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17550537--17550777	110	2.2	110	81	3	279	11	12	31	43	1.79
17553812--17553859	23	2.1	23	92	0	78	27	22	27	22	1.99
17553844--17553949	31	3.4	31	84	2	133	22	16	27	33	1.96
17555329--17555447	37	3.2	37	87	0	175	29	12	36	21	1.90
17559279--17559365	31	2.8	31	89	0	120	27	16	24	32	1.96
17559593--17559626	16	2.1	16	88	0	50	64	5	0	29	1.17
17560520--17560886	31	11.8	31	82	0	383	23	17	21	37	1.94
17561647--17562065	31	13.5	31	82	0	469	37	21	16	23	1.93
17562840--17562973	31	4.3	30	75	8	108	23	14	32	29	1.94
17562837--17562973	62	2.2	62	79	5	152	24	14	32	29	1.94
17563051--17563093	23	2.0	20	83	16	52	51	2	13	32	1.54
17563074--17563219	16	9.1	16	72	11	66	50	3	6	39	1.46
17563047--17563182	52	2.6	51	84	4	182	50	3	8	37	1.51
17563151--17563229	16	4.9	16	75	12	63	54	2	7	35	1.42
17563161--17563219	29	2.0	30	83	9	77	52	3	6	37	1.45
17564912--17565174	93	2.8	93	87	1	339	34	17	19	28	1.95
17564912--17565174	31	8.5	31	86	1	307	34	17	19	28	1.95
17565656--17565711	29	1.9	29	92	0	94	35	33	10	19	1.87
17565653--17565779	23	5.1	25	69	23	81	35	30	13	20	1.91
17565756--17565982	47	4.8	47	81	1	258	22	32	17	26	1.96
17568252--17568301	25	2.0	26	84	4	66	22	18	12	48	1.80
17573423--17573644	36	6.3	35	77	4	189	35	6	14	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17573576--17573619	22	2.0	22	95	0	79	34	4	15	45	1.67
17574788--17575111	180	1.8	180	86	2	472	37	12	15	35	1.84
17577939--17577964	13	2.0	13	100	0	52	38	0	7	53	1.30
17578004--17578037	17	2.0	17	88	0	50	35	5	11	47	1.65
17579859--17580049	35	5.5	35	82	4	208	34	5	14	45	1.68
17579852--17580053	107	1.9	103	83	6	253	34	5	13	46	1.67
17584894--17585061	43	3.9	43	83	3	196	25	17	33	23	1.96
17585323--17585385	22	2.9	22	80	0	72	33	22	20	23	1.97
17586404--17586633	81	3.0	77	67	17	190	29	15	31	23	1.95
17586398--17586682	151	1.9	151	89	0	444	29	15	30	24	1.96
17586778--17586844	23	2.9	23	77	0	62	28	14	28	28	1.96
17587299--17587484	87	2.1	87	86	2	257	25	15	26	32	1.95
17587496--17587606	31	3.6	31	95	0	204	27	15	23	33	1.95
17591701--17591875	23	7.7	23	84	3	194	35	20	12	31	1.90
17591701--17591872	66	2.5	68	83	6	204	36	20	12	30	1.90
17592106--17592227	63	1.9	63	86	0	172	33	13	30	22	1.93
17593754--17593964	107	2.0	106	89	0	323	36	7	12	43	1.71
17593709--17593985	35	7.9	35	82	3	263	36	7	13	42	1.72
17593774--17593987	71	3.0	70	82	3	284	36	6	13	43	1.69
17604269--17604305	2	19.0	2	88	5	58	54	0	45	0	1.00
17604306--17604386	42	2.0	42	90	9	123	34	7	13	43	1.72
17607663--17607701	17	2.2	19	86	9	55	17	25	10	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17608507--17608565	16	3.7	16	80	6	66	71	0	5	23	1.06
17608503--17608568	27	2.5	28	74	18	77	69	0	6	24	1.10
17608732--17608798	20	3.2	21	77	10	66	43	0	1	55	1.09
17608740--17608831	27	3.3	27	73	18	89	47	0	1	51	1.07
17608763--17608812	22	2.3	21	80	10	55	50	0	2	48	1.12
17620049--17620097	20	2.5	20	78	12	57	59	12	0	28	1.34
17620585--17620656	35	2.1	35	89	5	110	29	25	12	33	1.92
17621524--17621591	21	3.2	21	81	6	66	25	11	19	44	1.84
17623020--17623072	24	2.2	24	82	0	61	35	30	5	28	1.80
17623029--17623088	24	2.5	24	97	0	111	31	31	6	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106