genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  98  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37256296--37256320	3	8.3	3	100	0	50	36	0	0	64	0.94
37257300--37257357	12	4.6	12	78	18	55	22	0	0	77	0.77
37257299--37257363	26	2.5	25	85	7	85	23	0	0	76	0.78
37257299--37257363	13	5.0	13	78	12	71	23	0	0	76	0.78
37259019--37259104	29	3.0	28	86	3	109	46	8	25	19	1.77
37259025--37259104	14	5.6	14	68	11	54	47	7	26	18	1.75
37259346--37259454	26	4.2	26	89	0	155	17	20	22	40	1.91
37260462--37260516	27	1.9	29	82	10	69	40	1	10	47	1.49
37262646--37262680	18	1.9	18	94	0	61	71	2	14	11	1.25
37270299--37270339	17	2.3	19	87	8	59	73	0	2	24	0.96
37291400--37291646	89	2.8	87	78	12	245	38	1	2	57	1.19
37291514--37291568	16	3.5	16	76	14	60	41	1	0	56	1.10
37291431--37291579	58	2.6	57	73	16	135	42	1	1	55	1.17
37291633--37291668	19	1.9	18	88	5	54	36	0	0	63	0.94
37291609--37291679	18	3.4	22	72	20	55	38	0	1	60	1.06
37293304--37293335	2	16.0	2	93	0	55	53	0	0	46	1.00
37299613--37299655	17	2.6	16	79	13	52	46	2	6	44	1.43
37299702--37300947	618	2.0	624	87	5	1835	39	9	11	39	1.75
37312384--37312416	2	17.0	2	87	6	50	48	0	0	48	1.01
37324125--37324153	7	4.3	7	95	4	51	89	0	10	0	0.48
37323708--37324473	318	2.4	314	95	2	1380	42	14	18	23	1.88
37324443--37324467	9	2.8	9	100	0	50	92	0	8	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37324528--37324561	1	34.0	1	93	0	59	97	0	2	0	0.19
37324520--37324567	8	6.0	8	87	7	53	89	2	8	0	0.56
37324520--37324567	6	7.1	7	90	9	50	89	2	8	0	0.56
37324541--37326000	316	4.7	314	96	2	2667	43	14	17	24	1.87
37331805--37331846	16	2.6	16	88	7	59	54	0	7	38	1.28
37332153--37332290	50	2.8	50	82	7	149	55	4	5	34	1.43
37342713--37342750	18	2.1	19	95	5	69	76	7	5	10	1.15
37356702--37356781	22	3.4	24	71	21	80	45	5	6	43	1.51
37360555--37360596	19	2.1	20	82	8	50	47	26	7	19	1.74
37369216--37369325	54	2.0	54	100	0	220	37	5	37	20	1.75
37376331--37376402	25	2.9	25	85	0	81	31	16	6	44	1.74
37379503--37379564	2	31.0	2	90	0	88	46	0	4	48	1.23
37384951--37384977	2	13.5	2	100	0	54	51	0	0	48	1.00
37386046--37386075	16	1.9	16	93	6	53	16	0	0	83	0.65
37386520--37386957	239	1.8	236	85	3	621	37	8	6	47	1.59
37386973--37387022	20	2.5	20	90	0	82	30	22	4	44	1.71
37387369--37387394	6	4.3	6	100	0	52	80	0	0	19	0.71
37386993--37388086	251	4.3	251	79	4	1040	34	10	6	49	1.63
37388997--37389091	34	2.7	36	80	9	106	23	10	23	43	1.84
37392223--37392286	26	2.4	28	76	12	71	51	7	4	35	1.52
37394773--37394871	29	3.4	29	80	8	112	17	29	9	44	1.79
37395424--37395479	15	3.5	16	76	23	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37395633--37395719	16	5.4	16	71	16	56	51	2	0	45	1.13
37395674--37395759	25	3.4	25	78	10	79	46	1	1	51	1.16
37395647--37395762	23	4.7	26	73	15	95	49	1	0	48	1.17
37397336--37397390	26	2.1	27	82	3	67	27	16	18	38	1.92
37401233--37401272	13	3.1	13	81	0	53	82	7	2	7	0.92
37402068--37402123	29	1.9	29	85	0	76	17	25	10	46	1.80
37404189--37404229	21	2.0	21	85	0	55	36	4	14	43	1.67
37404337--37404361	2	12.5	2	100	0	50	48	0	0	52	1.00
37410312--37410355	21	2.1	21	82	0	52	59	13	9	18	1.60
37470603--37470665	31	2.0	31	100	0	126	28	15	19	36	1.92
37473224--37473278	4	13.8	4	77	11	51	25	0	0	74	0.82
37473205--37473271	27	2.5	26	83	7	80	23	2	0	73	0.97
37473241--37473278	17	2.2	18	81	13	53	26	0	0	73	0.83
37473224--37473275	13	3.9	13	82	12	61	25	0	0	75	0.81
37473198--37473278	38	2.2	37	79	14	89	24	2	1	71	1.05
37474115--37474162	21	2.3	21	82	10	55	22	8	0	68	1.16
37474992--37475073	21	3.9	21	83	6	103	18	17	28	36	1.93
37475039--37475119	23	3.6	23	83	5	85	27	12	27	33	1.92
37475133--37475182	22	2.3	21	82	3	55	42	26	12	20	1.86
37475367--37475432	33	2.0	33	96	0	123	48	13	9	28	1.73
37481658--37481694	2	19.0	2	88	5	58	51	2	0	45	1.15
37483104--37483134	15	2.0	15	93	6	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37490665--37490698	2	17.0	2	100	0	68	50	0	0	50	1.00
37494787--37494859	21	3.5	21	75	7	85	45	2	2	49	1.31
37495760--37495995	24	10.2	24	66	11	89	23	19	20	36	1.95
37495775--37495902	45	2.8	45	84	0	166	22	21	22	33	1.97
37495827--37496062	69	3.4	69	85	0	292	25	17	19	36	1.94
37495760--37495971	114	1.9	114	83	2	282	24	20	20	35	1.96
37496016--37496084	24	2.9	24	93	0	111	27	8	21	42	1.82
37504246--37504278	14	2.4	14	85	5	50	66	0	0	33	0.92
37510114--37510161	23	2.0	24	84	11	64	37	33	0	29	1.58
37512055--37512130	20	3.8	20	88	6	102	44	6	1	47	1.37
37514718--37514933	62	3.5	61	83	3	243	36	17	17	28	1.92
37514827--37515030	94	2.2	90	81	6	216	35	18	17	28	1.94
37514996--37515525	62	8.5	62	81	3	476	35	17	17	29	1.93
37514936--37515525	124	4.8	124	82	3	611	36	17	16	29	1.92
37514938--37515525	186	3.2	184	83	3	666	36	17	16	29	1.92
37514780--37515462	31	22.2	31	64	15	148	36	16	17	29	1.92
37518218--37518266	23	2.1	23	100	0	98	36	20	18	24	1.94
37528275--37528413	69	2.0	69	100	0	278	43	4	7	45	1.51
37547150--37547191	17	2.5	17	80	7	50	4	26	2	66	1.23
37550689--37550728	20	2.0	20	90	0	62	37	15	15	32	1.88
37554538--37554576	17	2.3	17	86	0	51	41	7	10	41	1.68
37561627--37561667	19	2.2	19	95	0	73	43	24	12	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37566249--37566502	69	3.7	69	82	3	244	33	14	29	22	1.93
37566249--37566540	23	12.7	23	74	7	198	33	14	29	21	1.94
37601035--37601064	10	2.9	10	95	5	51	0	0	10	90	0.47
37601035--37601078	14	3.4	13	87	6	63	0	0	11	88	0.51
37601035--37601088	12	4.6	11	86	11	72	3	0	9	87	0.67
37601035--37601088	23	2.3	23	87	6	74	3	0	9	87	0.67
37601081--37601244	82	2.0	83	87	1	240	38	15	13	32	1.86
37601089--37601482	38	10.2	38	77	11	354	42	17	13	25	1.86
37601185--37601485	114	2.6	113	86	6	403	44	18	13	23	1.85
37602527--37602574	1	48.0	1	78	0	51	0	8	2	89	0.56
37602519--37602574	17	3.3	17	83	13	71	0	10	1	87	0.62
37602525--37602574	22	2.3	22	90	10	77	0	10	2	88	0.61
37614431--37614469	13	3.1	13	81	7	53	25	0	2	71	0.98
37616050--37616080	9	3.4	9	95	0	53	22	0	0	77	0.77
37621957--37622059	39	2.6	39	85	0	152	31	29	16	23	1.96
37634976--37635007	2	16.0	2	100	0	64	50	0	0	50	1.00
37637950--37638005	28	2.0	29	82	3	69	71	3	23	1	1.11
37637961--37638005	14	3.2	13	82	14	54	66	2	28	2	1.15
37644630--37644683	28	1.9	29	85	7	76	33	3	1	61	1.25
37645430--37645482	6	8.8	6	91	0	88	50	15	0	33	1.44
37645426--37645482	30	1.9	30	100	0	114	50	14	0	35	1.42
37645693--37645755	33	1.9	33	93	0	108	42	17	1	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37648425--37648466	21	1.9	23	85	9	61	71	7	11	9	1.31
37653432--37653493	31	2.0	31	100	0	124	48	9	6	35	1.62
37655251--37655294	23	1.9	23	85	0	61	40	22	6	29	1.80
37656938--37656963	6	4.3	6	100	0	52	0	34	0	65	0.93
37656990--37657043	12	4.4	12	75	11	56	1	42	3	51	1.30
37657011--37657043	2	17.0	2	87	6	50	0	48	0	51	1.00
37656974--37657043	36	1.9	35	88	8	104	1	41	2	54	1.24
37661697--37661747	1	51.0	1	88	0	66	0	0	7	92	0.40
37661697--37661745	12	3.8	13	89	5	73	0	0	8	91	0.41
37661697--37661747	14	3.7	14	89	2	77	0	0	7	92	0.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106