genome.fa.s2.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  68  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25915483--25915565	31	2.8	29	78	10	87	25	15	7	51	1.69
25916159--25916203	23	2.0	23	86	8	65	26	37	2	33	1.69
25917346--25917404	25	2.4	25	82	0	64	45	0	0	54	0.99
25921988--25922033	19	2.6	17	86	6	56	67	2	2	28	1.14
25926246--25926298	22	2.4	22	96	0	97	64	3	3	28	1.28
25927055--25927094	16	2.5	17	77	22	50	65	7	2	25	1.32
25934440--25935313	439	2.0	438	97	0	1649	31	21	15	30	1.95
25935246--25935288	22	2.0	22	95	0	77	37	23	9	30	1.86
25945469--25945531	25	2.5	25	80	10	67	12	33	12	41	1.81
25945579--25945751	59	3.1	58	74	19	172	1	42	4	52	1.27
25945616--25945747	59	2.3	56	87	6	176	1	40	3	54	1.25
25945862--25945924	15	4.2	15	84	8	74	0	22	0	77	0.76
25945860--25945920	10	6.0	10	80	1	59	0	21	0	78	0.75
25946094--25946127	16	2.2	16	94	5	61	29	0	0	70	0.87
25947333--25947485	42	3.7	42	84	0	191	24	21	33	20	1.97
25947526--25947556	2	15.5	2	100	0	62	51	0	0	48	1.00
25952195--25952235	21	1.9	22	90	5	66	51	7	24	17	1.70
25952195--25952239	20	2.2	21	84	11	58	55	6	22	15	1.63
25952193--25952240	21	2.3	20	79	10	60	56	6	22	14	1.61
25960219--25960259	21	1.9	22	90	5	66	51	9	21	17	1.74
25960218--25960265	21	2.2	21	81	3	60	58	8	18	14	1.61
25964277--25964328	25	2.1	25	82	7	61	57	5	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25966055--25966079	11	2.3	11	100	0	50	16	44	8	32	1.76
25969038--25969126	45	2.0	45	95	0	160	35	5	24	33	1.79
25974335--25974498	54	3.0	54	86	4	231	26	44	12	16	1.83
25974500--25974628	41	3.1	41	76	7	136	26	34	14	24	1.94
25975295--25975338	22	2.0	22	86	8	63	31	20	6	40	1.79
25980087--25980206	53	2.3	53	86	0	159	28	22	5	43	1.76
25985330--25985374	19	2.3	20	84	3	56	28	22	31	17	1.97
25985371--25985449	40	2.0	40	89	0	122	35	24	21	18	1.96
25991959--25992003	22	2.0	22	95	0	81	33	24	17	24	1.96
25992277--25992318	3	14.7	3	82	9	52	33	40	0	26	1.56
25992310--25992441	43	3.1	43	88	0	183	19	37	19	23	1.94
25993225--25993268	19	2.2	21	92	8	74	36	15	25	22	1.94
25994961--25995077	53	2.2	53	96	0	216	29	17	12	39	1.88
25997271--25997330	3	20.0	3	96	0	111	33	1	0	65	1.03
26000276--26000332	29	2.0	28	89	3	87	21	38	22	17	1.93
26000565--26000603	20	2.0	20	89	0	60	33	43	17	5	1.72
26013472--26013522	15	3.4	15	91	0	84	52	15	0	31	1.43
26016022--26016058	19	1.9	19	100	0	74	43	29	0	27	1.55
26017916--26017993	35	2.2	35	81	4	84	30	35	10	23	1.88
26018811--26018868	30	1.9	30	83	13	75	72	3	22	1	1.09
26018811--26018861	19	2.6	19	81	3	57	72	3	23	0	1.01
26023537--26023570	2	16.5	2	93	6	59	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26044196--26044694	111	4.4	117	83	5	567	45	26	11	17	1.81
26044282--26044800	111	4.7	111	83	8	612	46	26	10	17	1.80
26044591--26044797	102	2.0	103	86	2	292	44	27	9	18	1.80
26045446--26045505	30	2.0	30	96	0	111	30	28	16	25	1.97
26046094--26046281	102	1.8	103	84	1	261	36	20	12	29	1.90
26046196--26046336	55	2.6	55	88	0	201	34	20	12	32	1.90
26048272--26048366	40	2.4	39	83	3	127	41	18	16	23	1.90
26059501--26059563	30	2.1	30	96	0	117	36	19	22	22	1.95
26059556--26059625	33	2.1	33	100	0	140	38	28	11	21	1.88
26060675--26060786	35	3.3	35	73	14	108	29	10	25	34	1.89
26060658--26060830	67	2.6	67	82	5	190	26	10	25	36	1.89
26068392--26068526	35	4.0	34	74	14	111	24	11	27	36	1.90
26068395--26068582	67	2.8	67	86	3	263	25	11	25	37	1.90
26068433--26068543	32	3.4	32	77	16	127	24	11	27	36	1.90
26079463--26079671	104	2.0	104	88	0	310	28	35	7	28	1.84
26081957--26082006	25	2.0	26	84	11	68	72	14	12	2	1.22
26082427--26082548	34	3.6	34	85	3	156	24	14	22	37	1.92
26082704--26082751	22	2.2	22	92	0	78	35	6	45	12	1.67
26082806--26082894	25	3.4	25	82	4	97	47	12	23	16	1.81
26085747--26085844	38	2.6	38	96	0	178	30	10	21	37	1.87
26085860--26085928	36	1.9	36	93	0	120	27	11	24	36	1.90
26090762--26090864	38	2.6	39	84	4	136	22	37	18	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26090981--26091013	2	16.5	2	100	0	66	51	0	0	48	1.00
26096105--26096151	20	2.2	22	78	17	55	12	17	6	63	1.48
26101135--26101168	2	17.0	2	87	0	50	50	0	0	50	1.00
26101520--26101661	42	3.4	42	80	3	169	22	31	19	26	1.98
26103916--26103945	11	2.7	11	89	0	51	56	0	0	43	0.99
26105633--26105705	35	2.1	35	92	0	119	34	6	28	30	1.83
26107259--26107367	39	2.8	39	79	6	121	21	17	39	22	1.92
26130289--26130314	2	13.0	2	100	0	52	50	0	0	50	1.00
26130662--26130718	25	2.3	24	79	8	69	15	24	14	45	1.83
26130714--26130800	46	1.9	45	86	9	124	3	25	2	68	1.16
26131084--26131159	34	2.3	33	84	8	100	36	28	10	23	1.88
26132144--26132171	11	2.5	11	100	0	56	39	0	0	60	0.97
26135338--26135697	179	2.0	179	95	1	659	35	23	8	31	1.85
26139727--26139774	24	2.0	23	84	11	62	60	8	0	31	1.26
26141339--26142092	394	1.9	394	85	1	1044	29	16	16	37	1.91
26143364--26143398	18	1.9	18	94	0	61	28	20	25	25	1.99
26146885--26146925	21	1.9	22	95	5	75	14	24	29	31	1.95
26152800--26153034	117	2.0	117	95	0	425	24	34	20	21	1.97
26153255--26153279	13	1.9	13	100	0	50	48	0	0	52	1.00
26154281--26154328	8	5.5	8	77	18	51	27	4	0	68	1.07
26162395--26162456	32	1.9	32	86	3	88	50	8	6	35	1.58
26163362--26163575	117	1.8	118	89	2	340	42	4	7	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26163750--26163800	17	2.9	17	88	2	66	52	3	1	41	1.31
26163753--26163800	9	5.4	9	77	5	53	52	4	2	41	1.32
26171957--26171999	21	2.0	21	81	0	50	30	9	34	25	1.87
26180613--26180793	95	1.9	95	88	0	272	25	34	16	23	1.95
26180696--26180843	61	2.4	60	82	6	156	26	31	18	23	1.98
26182495--26182597	38	2.6	40	86	3	138	21	15	39	23	1.91
26188929--26188959	16	1.9	16	93	0	53	3	38	0	58	1.15
26197757--26197825	31	2.2	32	80	10	81	30	7	17	44	1.75
26199935--26200054	42	2.9	42	87	0	168	22	34	20	23	1.97
26200071--26200103	10	3.3	10	95	0	57	42	0	0	57	0.98
26203153--26203249	34	2.9	34	82	1	106	19	15	23	41	1.90
26203499--26203559	30	2.0	30	100	0	122	16	29	6	47	1.72
26206830--26207112	150	1.8	154	80	7	342	34	11	11	42	1.78
26217369--26217497	35	3.8	33	74	12	129	34	26	11	27	1.91
26217342--26217518	67	2.6	67	83	3	223	35	24	12	27	1.92
26217369--26217497	32	3.8	33	74	16	113	34	26	11	27	1.91
26218558--26218587	2	15.0	2	100	0	60	50	0	0	50	1.00
26226318--26226467	35	4.5	33	71	14	112	36	26	12	24	1.90
26226318--26226446	32	3.8	33	72	14	104	34	26	12	27	1.92
26226291--26226467	67	2.6	67	84	3	214	35	24	12	27	1.92
26230095--26230145	15	3.4	15	80	0	57	49	19	1	29	1.60
26233140--26233178	20	2.0	20	94	0	69	25	17	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26253530--26253621	48	1.9	48	91	2	150	41	7	7	43	1.61
26261474--26261523	17	2.9	17	79	8	57	28	22	4	46	1.70
26270330--26270656	68	4.9	68	78	9	271	35	17	12	35	1.87
26274679--26274709	16	1.9	16	93	0	53	67	16	3	12	1.35
26276915--26276953	20	1.9	20	84	5	51	69	10	2	17	1.28
26277708--26277803	26	3.7	26	94	0	156	41	6	16	35	1.74
26277659--26277803	78	1.9	76	84	8	193	40	9	15	35	1.80
26278439--26278480	19	2.2	19	83	8	50	59	0	19	21	1.38
26279598--26279920	80	4.0	80	85	3	409	25	13	35	26	1.92
26286882--26287097	37	5.5	37	70	20	168	20	14	39	25	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106