genome.fa.s2.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  89  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33985061--33985199	14	9.5	15	69	11	58	29	3	0	66	1.08
33985934--33985966	2	16.5	2	100	0	66	48	0	0	51	1.00
33986859--33986912	21	2.5	23	82	8	60	46	0	5	48	1.25
33986883--33986928	15	2.8	17	74	16	51	47	2	4	45	1.34
33987019--33987057	21	1.9	20	84	5	51	48	2	2	46	1.29
33987072--33987111	2	20.5	2	94	5	73	50	0	0	50	1.00
33992556--33992593	17	2.2	18	90	4	60	36	18	36	7	1.80
33993921--33994023	48	2.2	48	84	7	138	35	17	18	28	1.94
33997281--33997342	2	32.5	2	78	15	69	50	0	3	46	1.17
34000007--34000202	72	2.7	73	80	3	209	23	19	19	37	1.94
34006988--34007041	23	2.3	23	96	0	99	12	33	7	46	1.70
34007853--34007993	42	3.4	42	78	3	149	26	19	29	24	1.98
34009325--34009368	22	2.0	22	86	8	63	40	6	20	31	1.79
34011462--34011502	21	1.9	23	85	14	61	41	21	12	24	1.87
34013331--34013470	29	4.8	29	77	5	140	39	14	25	21	1.91
34013331--34013470	58	2.4	58	97	0	262	39	14	25	21	1.91
34016190--34016231	17	2.4	18	80	11	52	50	0	2	47	1.14
34024209--34024269	25	2.4	25	94	0	104	24	0	31	44	1.54
34043520--34044285	387	2.0	387	93	0	1309	20	24	16	37	1.93
34047695--34047747	20	2.7	20	82	11	74	43	1	1	52	1.23
34047813--34047910	6	15.5	6	75	6	70	26	1	1	71	0.99
34047820--34047907	13	6.9	13	72	15	69	26	1	1	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34047813--34047896	32	2.6	31	82	10	107	27	1	1	70	1.02
34047793--34047896	34	3.1	32	78	14	104	28	1	0	68	1.07
34048339--34048383	23	2.0	21	83	8	54	55	2	0	42	1.12
34048976--34049027	19	2.7	19	87	0	77	28	26	5	38	1.79
34049757--34049810	20	2.8	18	76	17	56	24	3	7	64	1.35
34050872--34050898	14	1.9	14	100	0	54	29	0	11	59	1.32
34052941--34053046	56	1.9	56	90	0	167	30	23	16	30	1.96
34065817--34065892	27	2.8	27	87	0	116	31	19	26	22	1.98
34066763--34066836	27	2.8	26	85	6	94	29	20	24	25	1.99
34068281--34068317	19	1.9	19	88	0	56	21	27	10	40	1.86
34070738--34070768	13	2.4	13	100	0	62	74	12	0	12	1.08
34072468--34072518	4	14.2	4	77	22	60	80	0	0	19	0.71
34072468--34072518	7	7.1	7	85	14	61	80	0	0	19	0.71
34072469--34072518	11	4.4	11	85	9	73	82	0	0	18	0.68
34072776--34072813	10	3.6	11	86	10	53	65	0	5	28	1.14
34073319--34073360	18	2.5	17	80	7	50	66	4	4	23	1.30
34095296--34095329	14	2.4	14	90	0	59	58	8	0	32	1.29
34096420--34096462	20	2.2	20	86	0	59	67	4	4	23	1.28
34104273--34104306	14	2.4	14	90	0	59	58	8	0	32	1.29
34105435--34105477	16	2.7	15	79	10	50	60	11	2	25	1.43
34106757--34106794	20	1.9	20	89	10	60	60	10	10	18	1.57
34107467--34107548	22	3.7	23	84	9	82	9	28	39	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34107481--34107548	22	3.1	22	91	0	100	10	29	39	20	1.86
34121948--34122015	32	2.2	31	81	5	75	20	42	0	36	1.52
34127447--34127497	24	2.2	25	79	13	63	11	19	29	39	1.87
34127458--34127509	24	2.2	24	100	0	104	11	21	30	36	1.89
34129375--34129402	14	2.0	14	100	0	56	42	21	14	21	1.88
34137107--34137146	20	2.0	20	85	0	53	40	12	15	32	1.84
34137866--34137966	34	3.2	34	67	18	108	48	15	12	22	1.79
34137891--34137993	27	3.6	27	69	16	89	48	13	13	24	1.78
34137866--34138006	61	2.3	61	100	0	282	49	15	12	22	1.77
34140663--34140717	13	4.1	14	77	9	62	16	7	3	72	1.21
34140934--34140974	19	2.2	19	86	0	55	68	4	7	19	1.32
34152827--34152952	56	2.2	56	95	0	225	60	2	5	31	1.33
34157884--34157926	22	2.0	20	86	8	59	81	9	6	2	0.95
34161235--34161304	26	2.7	24	78	20	70	50	1	2	45	1.25
34161458--34161517	15	4.3	15	71	16	56	48	0	1	50	1.11
34172427--34172491	30	2.2	30	88	0	94	50	4	30	13	1.62
34175552--34175585	12	2.8	12	86	0	50	44	5	29	20	1.75
34176229--34176267	15	2.7	15	88	7	55	30	17	10	41	1.83
34179903--34179947	21	2.1	21	95	0	81	26	8	17	46	1.78
34186358--34186400	22	2.0	22	81	9	52	62	0	9	27	1.25
34189057--34189125	30	2.4	30	73	7	72	33	5	0	60	1.20
34189057--34189166	27	4.0	26	71	19	80	31	5	0	62	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34208219--34208368	79	1.9	79	84	2	203	42	12	6	38	1.68
34208678--34208739	28	2.2	28	85	0	79	48	14	16	20	1.81
34208615--34208794	76	2.4	77	83	5	224	45	15	18	21	1.86
34208894--34208981	42	2.1	42	80	4	97	32	21	18	27	1.96
34219696--34219744	16	3.1	16	82	8	55	26	0	10	63	1.26
34222645--34222670	8	3.2	8	100	0	52	34	0	11	53	1.37
34222645--34222686	16	2.6	17	85	14	54	38	0	11	50	1.40
34222685--34222717	6	5.5	6	92	0	57	18	0	12	69	1.18
34222682--34222717	12	3.0	12	91	0	63	22	0	11	66	1.22
34224424--34224460	18	2.1	17	90	5	56	59	0	21	18	1.38
34225051--34225174	65	1.9	65	83	0	158	23	12	20	43	1.86
34225114--34225185	35	2.1	35	89	0	108	20	13	19	45	1.84
34228408--34228434	2	13.5	2	100	0	54	51	0	0	48	1.00
34230385--34230483	51	1.9	51	91	0	162	26	16	30	27	1.96
34231322--34231357	19	1.9	19	88	5	56	58	0	8	33	1.28
34232615--34232676	30	2.1	30	84	6	81	70	3	16	9	1.26
34235756--34235815	30	2.0	30	90	0	93	13	31	5	50	1.63
34242283--34242634	70	5.1	70	84	4	478	32	20	32	13	1.92
34242282--34242634	139	2.5	139	89	0	544	32	20	32	13	1.92
34243153--34243204	18	3.1	18	67	27	51	42	13	5	38	1.68
34243138--34243204	32	2.0	33	91	5	109	43	11	7	37	1.70
34245464--34245507	20	2.2	20	84	4	54	6	18	9	65	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34248236--34248291	24	2.3	24	100	0	112	42	12	12	32	1.80
34259422--34259467	24	1.9	24	90	0	74	56	19	2	21	1.52
34261160--34261288	63	2.0	64	83	1	161	21	31	16	31	1.95
34261631--34261815	31	6.0	31	86	4	214	26	15	17	40	1.89
34262935--34262975	20	2.0	20	100	0	82	31	14	29	24	1.95
34265315--34265789	118	4.0	117	80	4	465	25	19	27	28	1.99
34265315--34265789	235	2.0	235	83	1	603	25	19	27	28	1.99
34269661--34269956	31	9.5	31	88	0	405	39	19	17	23	1.92
34270644--34270941	47	6.4	47	80	3	197	25	28	17	28	1.98
34270686--34270762	24	3.2	24	70	17	79	22	22	23	32	1.98
34270678--34270952	94	2.9	94	81	5	315	24	28	18	28	1.98
34270678--34270951	47	5.9	46	79	5	255	24	28	18	28	1.98
34270897--34271043	58	2.5	58	86	8	185	23	34	16	25	1.95
34271016--34271066	23	2.2	23	92	0	84	25	37	9	27	1.87
34277365--34277452	42	2.1	42	85	4	117	45	14	17	22	1.85
34277383--34277468	42	2.0	42	84	4	111	44	12	19	23	1.85
34281632--34281670	12	3.2	12	85	0	51	0	30	17	51	1.46
34281827--34281995	24	7.0	24	69	10	121	33	18	27	19	1.96
34281813--34281994	75	2.6	69	86	5	229	34	18	27	20	1.96
34281930--34282018	45	2.0	45	88	4	135	35	17	28	17	1.94
34283621--34283670	26	1.9	26	95	0	91	22	12	6	60	1.53
34283907--34284059	46	3.3	44	65	17	103	30	12	22	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34283860--34284059	95	2.1	95	89	1	312	29	14	23	33	1.94
34284105--34284166	24	2.6	24	92	2	108	24	17	33	24	1.96
34286891--34287246	78	4.6	77	86	3	480	21	23	17	38	1.93
34286891--34287246	156	2.3	156	91	1	554	21	23	17	38	1.93
34290531--34291342	111	7.1	116	84	4	975	44	26	11	17	1.83
34290557--34291342	339	2.3	345	86	3	1078	45	26	11	17	1.82
34292620--34292795	48	3.5	48	72	13	156	38	23	11	26	1.89
34296487--34296568	21	4.0	21	80	1	85	28	2	18	51	1.59
34297344--34297433	34	2.7	33	81	3	108	31	12	23	33	1.91
34299619--34299664	20	2.3	20	88	7	67	32	4	17	45	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106