genome.fa.s2.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  29  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11377734--11377817	44	1.9	44	87	0	123	39	8	17	34	1.80
11380369--11380412	17	2.6	17	82	3	54	15	34	6	43	1.74
11380654--11380844	27	7.0	27	79	5	195	39	16	9	34	1.82
11380654--11380844	55	3.5	54	82	4	231	39	16	9	34	1.82
11382832--11382865	2	17.0	2	100	0	68	50	0	0	50	1.00
11383077--11383127	2	25.5	2	95	0	93	50	0	0	49	1.00
11387045--11387229	27	6.8	27	77	6	95	38	12	11	37	1.80
11387066--11387259	27	7.1	27	81	2	183	39	12	10	38	1.77
11387066--11387260	55	3.6	55	79	3	198	38	12	10	38	1.77
11387089--11387248	82	2.0	82	83	0	203	40	13	10	35	1.79
11409640--11409673	15	2.3	15	84	0	50	0	35	8	55	1.31
11416758--11416812	2	27.5	2	100	0	110	49	0	0	50	1.00
11420731--11420900	43	4.0	43	87	1	225	27	16	31	24	1.96
11421075--11421115	21	1.9	22	85	5	57	21	19	21	36	1.95
11422852--11422900	21	2.3	21	96	0	89	22	24	14	38	1.91
11423245--11423329	42	2.0	42	81	0	98	24	30	18	25	1.98
11425446--11425507	15	4.3	15	72	12	58	51	0	0	48	1.00
11425373--11425507	42	3.3	40	73	16	116	49	1	0	48	1.15
11425466--11425523	27	2.2	26	84	12	73	55	0	3	41	1.17
11427267--11427295	3	9.7	3	100	0	58	65	0	0	34	0.93
11430106--11430137	2	17.0	2	87	12	50	50	0	0	50	1.00
11435763--11435820	26	2.2	28	76	14	70	43	3	0	53	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11442880--11442959	36	2.2	36	95	0	142	33	20	21	25	1.97
11445671--11445708	16	2.4	16	86	4	51	31	5	2	60	1.33
11446903--11446934	11	3.1	11	82	17	50	46	9	9	34	1.68
11446903--11446942	20	2.0	20	90	0	62	52	7	12	27	1.66
11451819--11451843	13	1.9	13	100	0	50	48	8	0	44	1.32
11453218--11453255	19	2.0	19	94	0	67	42	28	0	28	1.56
11459335--11459363	15	1.9	15	100	0	58	13	3	13	68	1.33
11462301--11462406	27	3.8	27	71	14	90	14	14	30	41	1.85
11462351--11462462	30	3.6	30	85	11	163	10	9	35	43	1.73
11463767--11463800	2	17.5	2	93	6	61	47	0	0	52	1.00
11465802--11465833	2	15.5	2	93	6	55	46	0	50	3	1.17
11471539--11471604	33	2.0	32	97	2	123	33	15	0	50	1.44
11471549--11471629	35	2.3	34	85	10	101	38	12	2	45	1.55
11471549--11471606	2	28.5	2	91	3	62	39	8	0	50	1.33
11473759--11473813	21	2.5	22	85	2	76	21	10	21	45	1.82
11473758--11473829	22	3.3	22	77	11	58	23	11	20	44	1.84
11473841--11474235	23	16.6	25	79	12	270	35	26	13	24	1.92
11473841--11474235	69	5.5	73	77	13	306	35	26	13	24	1.92
11473997--11474253	95	2.7	95	87	3	352	36	24	13	25	1.92
11474222--11474277	21	2.7	21	82	0	76	37	30	14	17	1.90
11477846--11477889	17	2.5	19	82	14	58	25	6	15	52	1.68
11481387--11481418	17	1.9	16	93	6	55	62	0	6	31	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11485733--11485915	92	2.0	90	93	2	312	29	21	19	29	1.97
11492601--11492633	14	2.5	13	95	5	57	87	0	12	0	0.53
11492627--11492662	15	2.5	15	95	4	65	83	0	0	16	0.65
11493545--11494060	38	13.6	38	79	7	428	23	15	18	42	1.88
11493545--11494065	76	6.9	75	80	7	477	24	14	18	42	1.88
11493551--11494065	114	4.5	114	81	5	524	24	14	18	42	1.88
11496563--11496594	17	1.9	16	93	6	55	62	0	6	31	1.20
11498644--11498704	30	2.0	30	90	0	95	47	8	3	40	1.49
11499242--11499280	2	19.5	2	94	0	69	53	0	0	46	1.00
11501296--11501390	26	3.3	26	67	23	64	40	22	20	17	1.92
11501288--11501364	35	2.2	35	90	0	127	42	20	19	16	1.89
11501296--11501425	61	2.1	61	85	0	170	42	18	19	20	1.90
11501358--11501446	35	2.5	35	87	0	115	48	13	16	21	1.81
11501683--11501752	29	2.4	28	76	9	77	20	25	8	45	1.79
11501972--11501996	13	1.9	13	100	0	50	20	32	0	48	1.50
11507139--11507363	102	2.2	102	82	3	256	42	15	21	20	1.89
11508616--11508685	29	2.4	28	76	9	77	45	8	25	20	1.79
11510688--11510722	15	2.5	13	83	16	52	11	5	25	57	1.56
11510692--11510721	15	2.0	15	100	0	60	13	6	26	53	1.64
11510867--11510987	29	4.2	29	79	12	110	33	13	14	39	1.84
11510961--11511112	24	6.4	23	83	12	103	22	16	19	41	1.90
11510979--11511120	24	5.9	24	90	3	205	21	17	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11514938--11514968	15	2.1	15	100	0	62	32	35	6	25	1.82
11525781--11525820	18	2.2	18	86	0	53	30	5	15	50	1.65
11537007--11537050	22	2.0	22	81	0	52	40	18	9	31	1.81
11539642--11539687	20	2.3	20	92	0	74	45	19	6	28	1.75
11541499--11541536	20	1.9	19	89	5	58	47	2	0	50	1.15
11541379--11541614	123	2.0	120	85	6	325	40	12	1	45	1.50
11544526--11544571	19	2.4	20	82	10	60	54	0	2	43	1.12
11546385--11546409	13	1.9	13	100	0	50	44	0	8	48	1.32
11560646--11560683	20	1.9	20	100	0	76	28	5	21	44	1.73
11561906--11561930	13	1.9	13	100	0	50	44	0	8	48	1.32
11562958--11563008	26	2.0	25	96	0	84	35	5	11	45	1.65
11573540--11573567	11	2.5	11	100	0	56	92	0	7	0	0.37
11573713--11573772	26	2.4	26	77	5	70	28	15	16	40	1.89
11573793--11573881	45	2.0	45	93	0	151	26	20	20	32	1.97
11573781--11574074	114	2.6	114	85	3	423	26	20	19	34	1.96
11573878--11573997	45	2.7	45	88	0	168	25	21	20	33	1.97
11573923--11574075	69	2.2	69	92	0	252	24	19	20	35	1.96
11577907--11577995	43	2.1	41	81	4	97	14	20	5	59	1.55
11588854--11589060	26	8.1	26	70	9	147	34	14	10	40	1.80
11588868--11589067	51	3.9	51	88	2	276	36	13	10	40	1.78
11601069--11601841	123	6.3	122	79	7	701	28	16	17	37	1.91
11601069--11601841	62	12.5	62	81	3	722	28	16	17	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11601068--11601290	31	7.2	31	63	15	93	29	16	17	36	1.92
11601223--11601326	31	3.3	30	71	15	86	25	16	18	39	1.91
11608350--11608382	16	2.1	16	88	5	50	36	15	3	45	1.61
11613497--11613527	16	1.9	16	100	0	62	58	6	0	35	1.24
11621890--11621935	15	3.1	15	81	12	58	56	17	2	23	1.52
11628342--11628368	14	1.9	14	100	0	54	40	22	0	37	1.54
11628342--11628375	5	7.0	5	90	6	52	38	20	2	38	1.68
11628409--11628454	15	3.1	15	84	12	67	58	17	0	23	1.38
11640653--11640693	18	2.3	18	95	0	73	19	7	19	53	1.68
11657079--11657520	234	1.9	233	86	2	627	38	16	15	29	1.90
11664389--11664435	24	2.0	24	87	8	69	12	46	8	31	1.72
11664552--11664702	69	2.2	69	86	0	221	33	15	29	21	1.95
11666260--11666316	26	2.3	25	84	6	71	24	17	3	54	1.59
11666915--11666971	23	2.5	23	82	0	69	22	21	26	29	1.99
11668846--11668909	32	2.1	31	94	5	112	15	10	39	32	1.82
11668996--11669029	13	2.7	12	90	9	50	2	20	0	76	0.92
11674599--11675029	111	3.8	110	80	7	429	45	23	10	20	1.82
11675665--11675721	30	1.9	30	92	0	96	26	28	19	26	1.99
11679300--11679676	190	2.0	190	91	0	619	18	25	21	35	1.95
11682635--11682661	14	1.9	14	100	0	54	59	11	0	29	1.32
11684332--11684506	48	3.5	48	72	17	151	40	22	9	26	1.85
11684277--11684506	102	2.2	103	85	2	302	39	23	10	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11688832--11689033	101	2.0	101	85	1	271	30	11	12	45	1.79
11691256--11691280	2	12.5	2	100	0	50	52	0	0	48	1.00
11693608--11693685	41	1.9	40	82	10	95	48	19	8	23	1.76
11702396--11702485	2	45.0	2	87	4	101	47	0	1	45	1.10
11711017--11711062	23	2.0	23	95	0	83	36	10	13	39	1.79
11717173--11717229	24	2.4	23	85	11	71	68	0	3	28	1.06
11717443--11717482	15	2.7	15	88	0	62	40	10	0	50	1.36
11725909--11725958	26	1.9	26	84	8	66	12	6	14	68	1.39
11727555--11727585	15	2.1	15	93	0	53	77	0	22	0	0.77
11737303--11737356	2	27.5	2	90	3	83	51	1	0	46	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106