genome.fa.s2.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  36  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13776977--13777028	25	2.1	25	92	0	86	51	21	1	25	1.57
13777394--13777662	86	3.1	86	88	0	394	39	8	7	44	1.62
13777457--13777596	46	3.1	46	68	23	127	42	7	5	44	1.55
13777414--13777642	42	5.4	39	71	16	161	41	7	5	45	1.54
13778308--13778622	35	8.9	35	83	3	312	43	13	6	36	1.70
13778411--13778470	18	3.3	18	68	9	50	45	15	8	31	1.75
13778429--13778488	18	3.3	18	68	9	59	48	11	6	33	1.66
13780632--13780734	38	2.6	40	83	3	120	23	36	18	21	1.95
13780851--13780905	2	27.5	2	100	0	110	50	0	0	49	1.00
13781698--13781742	23	2.0	23	95	0	81	46	8	31	13	1.74
13786014--13786342	180	1.8	180	89	2	518	34	15	13	37	1.86
13786014--13786386	180	2.1	180	86	4	511	33	16	12	38	1.86
13787088--13787300	35	6.1	35	80	2	243	43	13	6	36	1.70
13787088--13787303	71	3.1	71	82	3	269	43	12	6	36	1.69
13787068--13787280	106	2.0	105	88	0	318	41	13	7	37	1.73
13799413--13799437	2	12.5	2	100	0	50	52	0	0	48	1.00
13801262--13801307	22	2.1	22	88	8	67	65	0	19	15	1.28
13801262--13801307	23	2.0	22	91	4	74	65	0	19	15	1.28
13801302--13801448	51	2.9	51	82	10	192	62	4	16	16	1.49
13804495--13804529	12	2.9	12	95	0	61	88	2	8	0	0.61
13809252--13809404	80	1.9	80	91	2	254	34	26	8	30	1.86
13814603--13814643	21	1.9	22	90	5	66	51	7	24	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13814603--13814647	20	2.2	21	84	11	58	55	6	22	15	1.63
13814601--13814648	21	2.3	20	79	10	60	56	6	22	14	1.61
13826565--13826602	20	1.9	20	88	0	58	73	15	10	0	1.09
13826928--13826997	8	9.1	7	71	22	52	77	1	15	5	1.03
13827137--13827175	19	2.1	19	95	4	71	76	0	20	2	0.90
13831166--13831209	20	2.2	20	87	0	61	18	31	9	40	1.81
13832171--13832272	35	3.1	35	75	18	119	34	7	30	27	1.85
13832198--13832251	28	1.9	28	100	0	108	37	7	25	29	1.83
13833548--13833580	17	1.9	18	88	11	52	36	27	9	27	1.87
13833778--13833875	22	4.6	21	73	6	81	38	24	6	30	1.80
13834113--13834179	22	3.0	22	80	0	71	38	26	4	29	1.76
13834142--13834256	44	2.6	43	75	13	108	36	22	10	30	1.88
13834322--13834470	67	2.2	67	81	0	181	36	23	8	32	1.84
13834328--13834473	22	6.5	22	73	9	107	36	22	8	32	1.85
13834460--13834564	43	2.4	43	80	0	120	40	23	9	26	1.85
13834128--13834525	22	18.1	22	67	7	92	36	22	9	31	1.86
13834441--13834630	22	8.7	23	69	13	98	38	22	10	28	1.87
13834495--13834630	44	3.1	43	76	7	123	38	20	11	29	1.88
13834822--13834851	5	6.0	5	92	0	51	16	0	0	83	0.65
13842860--13842993	42	3.2	42	84	0	178	23	31	18	26	1.98
13844857--13844907	23	2.3	22	89	3	75	11	7	3	76	1.13
13848526--13848579	17	3.2	17	79	10	58	44	5	1	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13848595--13848627	15	2.1	17	88	11	52	54	6	0	39	1.25
13848636--13848674	2	19.5	2	91	0	60	46	0	2	51	1.14
13849118--13849256	40	3.5	40	80	1	161	22	0	17	59	1.42
13850452--13850505	27	2.0	27	100	0	108	40	14	7	37	1.74
13851170--13851207	15	2.5	16	87	8	53	26	5	18	50	1.68
13855566--13855791	43	5.3	43	76	6	194	32	11	20	35	1.89
13855577--13855789	42	5.1	40	73	10	133	32	11	21	34	1.89
13865550--13865592	2	21.5	2	100	0	86	48	0	0	51	1.00
13876334--13876398	29	2.2	29	97	0	121	33	15	10	40	1.82
13884120--13884287	43	3.9	43	83	3	196	22	33	18	26	1.97
13887751--13887815	27	2.4	27	89	2	94	61	4	16	16	1.50
13887739--13887847	31	3.7	30	79	14	111	59	3	15	21	1.51
13895874--13895916	20	2.1	21	86	4	61	27	25	9	37	1.87
13896069--13896109	21	2.0	21	100	0	82	24	24	14	36	1.93
13898214--13898393	90	2.0	90	86	0	252	25	12	17	45	1.83
13902484--13902532	2	25.0	2	91	4	82	48	2	48	0	1.12
13904512--13904781	134	2.0	134	100	0	540	34	10	15	39	1.82
13906571--13906638	35	1.9	35	84	0	91	35	19	11	33	1.88
13906975--13907109	60	2.2	60	81	5	148	38	14	8	39	1.75
13907018--13907173	60	2.6	59	81	9	172	35	15	8	40	1.79
13910110--13910151	19	2.2	19	91	0	66	16	35	9	38	1.81
13910241--13910286	16	3.1	14	82	17	58	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13913365--13913467	35	2.9	35	82	0	116	23	26	16	33	1.95
13918362--13918403	16	2.5	17	85	14	61	40	2	0	57	1.12
13918400--13918447	22	2.2	23	85	7	64	50	0	4	45	1.21
13919423--13919475	21	2.5	20	85	14	63	50	1	3	43	1.30
13919443--13919756	122	2.5	127	85	8	409	55	1	0	41	1.17
13919586--13919785	27	6.8	27	69	18	73	56	1	1	42	1.13
13919616--13919685	37	1.9	35	86	11	97	61	1	1	35	1.14
13919625--13919716	42	2.2	42	82	5	105	59	1	2	36	1.17
13919693--13919779	23	3.7	23	82	11	79	51	1	1	45	1.16
13922525--13922555	8	3.9	8	91	0	53	48	12	0	38	1.42
13943067--13943101	15	2.3	15	100	0	70	28	28	14	28	1.95
13943768--13943879	43	2.6	43	87	4	163	23	20	37	18	1.94
13943771--13943892	43	2.8	43	83	4	149	23	18	38	18	1.93
13943933--13943965	2	16.5	2	93	0	57	48	3	0	48	1.17
13944250--13944336	39	2.2	39	85	4	113	27	19	21	31	1.98
13945327--13945389	15	4.2	15	72	0	54	44	23	1	30	1.63
13949337--13949377	20	2.0	20	95	0	73	41	0	14	43	1.45
13949346--13949395	25	2.0	25	84	7	66	44	0	22	34	1.53
13965471--13965515	22	2.2	20	84	8	54	42	0	4	53	1.21
13965573--13965654	41	2.0	41	85	7	112	52	1	0	46	1.08
13965599--13965650	26	2.0	26	88	7	79	53	1	0	44	1.11
13972143--13972311	89	1.9	89	86	2	241	27	14	23	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13972524--13972805	139	2.0	139	95	0	501	34	3	14	47	1.63
13976671--13976783	57	2.0	54	94	5	199	32	19	5	41	1.74
13976805--13976879	2	37.5	2	94	0	132	48	1	1	49	1.18
13977316--13977389	4	19.2	4	72	8	64	0	35	0	64	0.94
13977316--13977395	15	5.3	15	85	7	108	0	36	0	63	0.94
13977316--13977400	8	11.0	8	82	9	106	0	37	0	62	0.96
13977316--13977395	31	2.6	31	96	2	144	0	36	0	63	0.94
13979266--13979308	23	1.9	22	85	4	59	60	11	2	25	1.43
13980263--13980312	18	2.8	19	81	6	52	28	10	18	44	1.81
13980549--13980632	9	9.3	9	85	0	114	28	11	20	39	1.88
13981821--13981880	8	7.8	8	83	5	61	26	0	46	26	1.53
13981821--13981880	16	3.9	16	82	4	79	26	0	46	26	1.53
13982302--13982336	16	2.1	17	89	5	54	77	0	0	22	0.78
13983704--13983767	21	3.0	21	88	0	92	26	18	17	37	1.93
13985011--13985101	42	2.2	42	95	0	164	24	16	34	25	1.95
13985402--13985499	39	2.5	39	90	3	153	19	20	22	37	1.94
13989313--13989378	19	3.5	19	93	2	107	37	7	0	54	1.29
13989765--13989811	24	2.0	24	95	0	85	29	4	17	48	1.65
13990839--13990891	26	2.0	27	85	3	72	37	24	16	20	1.93
13991144--13991184	21	1.9	22	90	5	66	51	7	24	17	1.70
13991144--13991188	20	2.2	21	84	11	58	55	6	22	15	1.63
13991142--13991189	21	2.3	20	79	10	60	56	6	22	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14011742--14011772	2	15.5	2	100	0	62	51	48	0	0	1.00
14011772--14011796	2	12.5	2	100	0	50	52	0	0	48	1.00
14011846--14011927	37	2.2	37	97	0	155	28	39	7	25	1.82
14021398--14021535	27	5.1	26	62	19	75	28	38	14	18	1.90
14021376--14021535	55	2.9	55	93	0	275	29	37	13	19	1.90
14021391--14021531	29	5.1	29	62	25	88	27	37	15	19	1.92
14021628--14021678	2	25.0	2	92	4	84	47	3	0	49	1.20
14026198--14026339	38	3.7	38	87	3	187	24	38	14	21	1.92
14026199--14026340	19	7.4	19	62	9	63	23	38	14	22	1.92
14034090--14034191	38	2.6	40	81	4	118	24	39	13	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106