genome.fa.s2.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  49  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18312564--18312617	25	2.2	25	86	0	72	48	11	3	37	1.57
18315232--18315610	85	4.5	85	92	2	620	45	12	1	40	1.50
18315525--18315566	13	3.2	13	83	6	50	45	16	0	38	1.48
18316124--18316176	23	2.3	23	96	0	97	35	15	18	30	1.92
18316722--18316753	15	2.2	14	94	5	55	0	53	0	46	1.00
18320396--18320439	17	2.6	16	85	10	52	77	0	4	18	0.94
18320382--18320439	22	2.5	23	81	16	66	74	0	8	17	1.06
18320754--18320936	90	2.0	90	94	0	321	36	24	19	20	1.95
18323841--18323886	23	2.0	23	95	0	83	39	13	10	36	1.79
18326320--18326385	4	16.0	4	80	19	66	72	0	0	27	0.85
18326336--18326390	11	5.2	11	81	18	64	76	0	0	23	0.79
18326330--18326402	16	4.6	16	93	6	123	75	0	0	24	0.81
18326341--18326399	12	4.7	12	77	22	59	76	0	0	23	0.79
18333986--18334031	23	2.0	23	91	0	74	41	10	10	36	1.75
18335866--18335908	21	2.0	22	86	4	61	44	0	2	53	1.13
18335882--18335982	53	1.9	51	82	7	123	46	0	0	52	1.07
18335933--18335978	24	1.9	24	82	8	58	41	0	2	56	1.11
18336054--18336115	20	2.8	22	78	14	74	48	3	0	48	1.17
18336048--18336123	36	2.1	37	85	7	102	44	2	0	52	1.14
18339232--18339404	86	2.0	86	91	0	283	35	14	12	36	1.84
18346419--18346688	34	7.8	34	73	12	180	18	16	40	24	1.90
18346419--18346688	69	3.9	70	81	9	265	18	16	40	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18346485--18346688	103	2.0	103	82	9	247	19	15	41	23	1.89
18351696--18351720	2	12.5	2	100	0	50	48	0	0	52	1.00
18352696--18352743	20	2.3	21	79	10	55	27	14	4	54	1.59
18353888--18354034	70	2.0	75	85	9	205	41	7	10	40	1.67
18376325--18376350	13	2.0	13	100	0	52	61	7	0	30	1.24
18381858--18381887	2	15.0	2	100	0	60	0	0	50	50	1.00
18383554--18383677	33	3.7	34	72	7	103	26	16	22	34	1.95
18391559--18391587	2	14.5	2	100	0	58	48	0	0	51	1.00
18394390--18394420	2	15.5	2	93	0	53	54	0	45	0	0.99
18413748--18414167	211	2.0	210	98	0	804	29	22	17	30	1.97
18418600--18418666	7	9.4	7	76	17	59	0	32	0	67	0.91
18418606--18418662	7	7.6	8	76	20	61	0	35	0	64	0.93
18418606--18418663	15	3.9	14	84	10	80	0	36	0	63	0.94
18418602--18418665	30	2.1	30	97	0	119	0	34	0	65	0.93
18419909--18419934	2	13.0	2	100	0	52	50	0	0	50	1.00
18427157--18427189	14	2.3	15	94	5	59	21	0	0	78	0.75
18431406--18431452	21	2.2	22	88	3	69	23	14	19	42	1.88
18444622--18444661	18	2.2	18	100	0	80	32	5	17	45	1.70
18444622--18444667	18	2.6	18	92	0	65	30	8	17	43	1.79
18451476--18451504	2	14.5	2	100	0	58	48	0	0	51	1.00
18451528--18451641	42	2.7	42	82	4	122	25	19	35	20	1.96
18453826--18453963	46	3.0	46	94	0	249	31	19	26	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18454336--18454415	36	2.3	35	82	2	88	26	36	15	22	1.93
18458300--18458403	42	2.5	42	90	3	156	22	34	23	20	1.97
18460165--18460207	2	21.5	2	100	0	86	51	0	0	48	1.00
18460745--18460803	25	2.4	25	85	2	75	32	16	28	22	1.96
18462597--18462631	14	2.5	14	80	0	52	57	14	0	28	1.38
18464568--18464605	19	2.0	20	89	5	60	52	0	0	47	1.00
18465903--18466058	52	3.0	52	93	0	267	23	13	30	32	1.93
18466034--18466115	35	2.3	35	83	10	96	28	15	30	25	1.96
18471879--18471916	19	2.0	20	94	5	69	55	0	0	44	0.99
18478501--18478538	19	2.0	19	94	0	67	42	28	0	28	1.56
18479414--18479441	2	14.0	2	100	0	56	50	0	0	50	1.00
18479981--18480053	36	2.1	36	87	5	105	27	12	24	35	1.91
18480244--18480327	27	3.1	27	91	1	132	50	17	23	8	1.74
18486131--18486165	17	2.1	17	88	0	52	2	34	25	37	1.71
18501375--18501480	38	2.7	39	85	5	135	23	40	15	20	1.90
18502835--18502888	28	2.0	28	85	10	76	33	20	18	27	1.96
18507094--18507125	14	2.3	15	89	10	50	21	21	12	43	1.86
18508055--18508139	25	3.2	25	65	12	71	24	41	15	18	1.89
18508037--18508155	54	2.2	54	98	0	229	25	42	14	17	1.87
18511770--18511799	14	2.1	14	93	0	51	40	0	10	50	1.36
18511771--18511800	10	3.0	10	95	0	51	36	0	13	50	1.42
18516810--18516844	2	17.5	2	87	0	52	48	2	2	45	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18526701--18526920	106	2.1	103	87	5	309	37	5	11	45	1.65
18526728--18526921	35	5.5	35	81	3	219	38	6	11	43	1.67
18534765--18534814	20	2.4	21	90	6	84	32	16	0	52	1.44
18535113--18535225	15	7.8	15	64	18	69	38	2	3	54	1.31
18535113--18535236	43	2.9	42	79	12	144	39	4	3	53	1.36
18543882--18543934	22	2.5	20	80	14	54	60	1	37	0	1.08
18559161--18559267	38	2.7	39	84	7	146	25	40	12	22	1.88
18560680--18560720	19	2.2	19	95	0	73	51	0	0	48	1.00
18566531--18566636	38	2.7	40	86	2	153	22	39	16	20	1.92
18572494--18572553	23	2.6	23	94	0	102	23	1	41	33	1.64
18574574--18574615	21	2.0	21	90	0	66	33	19	26	21	1.97
18576535--18576843	54	5.6	55	88	2	417	22	38	16	22	1.93
18576815--18576917	38	2.6	39	81	7	120	23	36	17	22	1.94
18580296--18580330	17	2.1	17	94	0	61	31	22	37	8	1.85
18585201--18585233	17	1.9	17	100	0	66	33	12	30	24	1.91
18595284--18595389	38	2.7	39	82	5	126	24	40	15	19	1.90
18595500--18595536	2	19.0	2	88	5	58	48	48	2	0	1.15
18596761--18596815	28	2.0	28	86	13	78	29	18	21	30	1.97
18597893--18597934	10	4.2	10	81	9	50	2	28	0	69	1.01
18601520--18601549	11	2.7	11	94	0	51	76	0	0	23	0.78
18608059--18608252	76	2.6	75	80	4	192	37	26	11	24	1.90
18610069--18610169	53	1.9	53	85	0	139	27	11	22	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18610535--18610580	19	2.6	18	83	10	51	36	0	21	41	1.54
18620769--18621089	35	9.1	35	80	5	229	43	14	6	35	1.71
18620777--18621089	142	2.2	141	91	1	502	43	14	7	35	1.72
18623407--18623450	2	22.0	2	95	0	79	50	2	0	47	1.13
18630145--18630334	42	4.4	43	78	12	176	26	16	32	24	1.96
18630226--18630338	43	2.6	44	84	7	140	28	16	31	23	1.96
18647489--18648065	289	2.0	288	98	0	1100	40	12	15	30	1.85
18654325--18654443	42	2.8	42	90	0	184	22	21	32	23	1.98
18655138--18655178	21	1.9	22	85	5	57	51	9	24	14	1.72
18663724--18663769	21	2.2	20	84	7	56	15	21	6	56	1.61
18663729--18663769	21	1.9	22	90	5	66	17	24	7	51	1.70
18669674--18669710	2	19.0	2	94	5	67	51	0	0	48	1.00
18682986--18683075	44	2.1	43	91	4	153	40	13	8	36	1.76
18700526--18700568	21	2.0	21	86	0	59	23	0	11	65	1.25
18709322--18709362	21	2.0	20	90	4	64	21	4	7	65	1.37
18710129--18710166	19	2.0	19	100	0	76	26	0	31	42	1.56
18710211--18710269	28	2.1	28	87	6	84	32	22	22	23	1.98
18711393--18711418	13	2.0	13	100	0	52	46	0	7	46	1.31
18713112--18713153	20	2.1	20	100	0	84	33	9	4	52	1.55
18718876--18719005	60	2.2	60	98	0	251	30	36	14	17	1.90
18728144--18728355	76	2.9	76	86	6	267	41	8	12	37	1.74
18732113--18732159	2	23.5	2	86	0	58	0	40	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18732113--18732159	10	4.7	10	91	0	76	0	40	0	59	0.97
18736241--18736300	20	3.0	20	80	2	77	31	38	1	28	1.67
18736299--18736408	43	2.6	43	92	2	177	19	37	20	23	1.94
18748289--18748354	31	2.1	32	85	5	89	16	22	12	48	1.79
18748287--18748377	25	3.1	30	76	17	102	15	21	13	49	1.78
18748540--18748652	34	3.3	34	82	2	138	36	25	8	29	1.86
18752480--18752537	28	2.1	28	84	9	75	24	22	22	31	1.99
18752591--18752628	20	1.9	20	100	0	76	44	21	5	28	1.73
18756779--18756817	5	7.8	5	91	0	60	38	23	0	38	1.55
18759554--18759591	20	1.9	20	100	0	76	44	21	5	28	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106