genome.fa.s2.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  4  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1573035--1573074	19	2.0	20	86	13	57	0	17	0	82	0.67
1579644--1579745	51	2.0	51	98	0	195	23	24	22	29	1.99
1591603--1591637	16	2.1	18	89	10	56	85	5	8	0	0.73
1592312--1592377	2	33.0	2	100	0	132	50	0	50	0	1.00
1593917--1593961	16	2.8	15	90	10	63	75	0	0	24	0.80
1603471--1603519	24	2.0	24	92	7	82	53	6	8	32	1.55
1603957--1603999	17	2.7	16	79	10	52	55	0	0	44	0.99
1616611--1616656	15	3.1	15	75	12	58	13	34	17	34	1.88
1616611--1616669	30	2.0	30	83	6	75	11	38	18	30	1.87
1622737--1622763	3	9.0	3	100	0	54	66	0	33	0	0.92
1635909--1636097	26	7.3	26	87	0	216	27	12	21	39	1.89
1636081--1636129	23	2.1	23	96	0	89	26	12	24	36	1.91
1656401--1656447	3	15.7	3	86	0	58	0	38	0	61	0.96
1663784--1663816	2	16.5	2	93	0	57	51	3	0	45	1.16
1685306--1685374	30	2.3	30	92	0	111	21	27	27	23	1.99
1692029--1692085	23	2.5	23	94	0	96	57	10	26	5	1.53
1695433--1695468	16	2.2	16	100	0	72	66	8	5	19	1.38
1700552--1700691	33	4.2	33	89	0	199	2	35	12	49	1.56
1703859--1703884	12	2.2	12	100	0	52	42	26	15	15	1.87
1718103--1718151	21	2.3	22	79	6	57	38	2	6	53	1.38
1721602--1721671	2	35.0	2	97	0	131	48	0	0	50	1.01
1722924--1722953	4	7.8	4	92	7	53	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741032--1741059	13	2.2	13	100	0	56	46	0	7	46	1.30
1741362--1741770	123	3.4	120	76	6	303	37	7	9	45	1.65
1760212--1760255	19	2.2	21	84	11	58	43	0	2	54	1.12
1773532--1773573	17	2.4	18	84	7	52	71	2	0	26	0.98
1773697--1773764	29	2.3	29	80	12	68	72	0	2	25	0.99
1773743--1773849	22	4.9	22	69	12	76	57	0	1	39	1.09
1773745--1773901	67	2.3	65	91	6	242	57	0	3	38	1.20
1775799--1775832	17	2.1	17	88	5	52	11	23	11	52	1.70
1782644--1782692	13	3.8	13	81	5	55	42	6	4	46	1.47
1782703--1782772	27	2.7	26	80	6	79	44	11	5	38	1.64
1785583--1785624	15	2.7	15	82	14	50	40	9	19	30	1.83
1798015--1798054	15	2.4	16	84	16	55	42	0	2	55	1.13
1798058--1798100	22	2.0	21	81	4	50	46	0	9	44	1.35
1798162--1798201	9	4.6	9	84	6	55	52	0	0	47	1.00
1807946--1808010	33	2.0	33	90	6	105	43	12	6	38	1.67
1809708--1809746	20	2.0	20	94	0	69	69	0	2	28	1.02
1816103--1816160	2	29.5	2	84	10	75	48	1	1	46	1.22
1824639--1824682	14	3.2	13	81	9	52	75	4	0	20	0.98
1825030--1825156	33	4.0	31	74	18	93	49	0	2	47	1.20
1827742--1827771	2	14.5	2	93	6	51	50	0	46	3	1.18
1827751--1828445	75	9.5	75	85	5	843	42	6	39	11	1.67
1827714--1828445	222	3.3	222	85	5	912	41	6	40	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827751--1828445	147	4.7	148	84	5	794	42	6	39	11	1.67
1828417--1828488	31	2.2	33	87	4	103	54	5	33	6	1.51
1839838--1839926	14	6.4	14	71	12	67	61	1	1	35	1.11
1839899--1839932	17	2.0	17	88	0	50	64	0	0	35	0.94
1840141--1840174	14	2.3	15	90	5	52	29	0	0	70	0.87
1843964--1844015	22	2.3	23	87	6	72	42	9	5	42	1.61
1844210--1844266	2	30.0	2	89	10	93	47	0	0	52	1.00
1844209--1844266	15	3.7	15	93	6	98	46	0	0	53	1.00
1849932--1849964	15	2.2	15	89	10	50	81	3	0	15	0.80
1855281--1855750	234	2.0	235	91	2	757	47	15	11	24	1.79
1855895--1855993	45	2.2	45	94	1	173	34	14	40	11	1.81
1868038--1868810	400	1.9	400	94	0	1375	42	8	8	40	1.66
1882942--1882975	15	2.2	16	89	5	52	44	0	2	52	1.16
1883793--1883835	22	2.0	22	90	4	70	46	11	2	39	1.53
1883926--1883961	18	1.9	19	88	5	56	30	0	2	66	1.06
1883958--1884000	10	4.3	10	82	8	52	53	0	0	46	1.00
1883953--1883996	20	2.2	20	80	4	54	56	0	0	43	0.99
1883938--1884007	30	2.3	31	79	11	83	44	0	0	55	0.99
1885135--1885185	26	2.0	26	88	0	75	15	11	17	54	1.70
1885836--1885892	17	3.6	15	71	13	51	70	1	5	22	1.17
1886207--1886357	46	3.5	46	68	18	144	45	4	4	44	1.45
1886216--1886375	81	2.0	79	96	1	284	50	4	5	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886385--1886502	44	2.6	45	84	11	152	45	3	1	49	1.28
1886429--1886507	11	7.0	11	72	16	54	49	1	2	46	1.23
1887415--1887447	17	1.9	17	100	0	66	60	12	12	15	1.59
1896312--1896336	12	2.1	12	100	0	50	68	24	0	8	1.16
1904422--1904537	57	2.1	56	86	1	160	30	13	27	28	1.94
1904512--1904565	26	2.1	26	100	0	108	29	14	27	27	1.95
1913478--1913502	12	2.1	12	100	0	50	24	0	32	44	1.54
1914324--1914540	64	3.3	65	81	5	242	32	15	7	44	1.74
1916028--1916236	102	2.0	102	92	0	346	19	21	19	39	1.92
1947258--1947311	28	1.9	28	92	0	90	68	0	0	31	0.90
1953724--1953859	71	1.9	70	86	1	191	25	18	15	40	1.90
1956428--1956586	77	2.1	78	95	1	284	30	19	15	34	1.92
1964544--1964711	81	2.1	81	82	4	196	33	13	5	47	1.66
1967858--1967882	2	12.5	2	100	0	50	0	0	48	52	1.00
1983717--1983756	19	2.0	20	95	4	73	47	15	17	20	1.83
1985136--1985211	38	2.0	38	94	0	134	39	15	17	27	1.90
1987698--1987792	50	1.9	50	86	0	136	31	13	7	47	1.71
1996922--1996987	4	16.2	4	82	17	75	1	28	0	69	0.97
1996916--1996987	27	2.7	28	83	14	98	1	27	0	70	0.95
1997034--1997058	11	2.3	11	100	0	50	28	0	0	72	0.86
2000446--2000479	2	17.0	2	100	0	68	50	0	0	50	1.00
2001557--2001642	31	2.8	32	87	3	113	27	3	2	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2001574--2001624	16	3.3	15	79	17	59	27	1	0	70	0.98
2021803--2021911	40	2.6	41	86	7	139	35	27	13	22	1.92
2021810--2021911	45	2.4	40	87	8	132	36	26	14	22	1.93
2024161--2024210	26	1.9	26	88	8	75	44	2	4	50	1.32
2025305--2025329	2	12.5	2	100	0	50	48	0	0	52	1.00
2026620--2026876	129	2.0	130	87	0	372	46	2	5	44	1.41
2026775--2026821	17	2.7	18	77	9	53	46	0	6	46	1.28
2042544--2042573	2	15.0	2	100	0	60	50	0	50	0	1.00
2045866--2046008	73	2.0	73	100	0	286	22	18	20	39	1.93
2048164--2048228	14	4.4	15	73	21	57	56	1	0	41	1.08
2048158--2048217	31	2.0	29	93	6	102	56	0	0	43	0.99
2056501--2056549	24	2.0	24	100	0	98	32	16	36	14	1.89
2069929--2069966	20	1.9	20	84	10	51	47	28	7	15	1.74
2069690--2070070	192	2.0	195	87	2	552	33	18	16	30	1.93
2086342--2086440	43	2.3	43	98	0	189	27	18	17	37	1.93
2086344--2086416	24	3.2	24	64	25	68	24	21	15	38	1.92
2087985--2088019	2	17.5	2	100	0	70	0	48	0	51	1.00
2091707--2091765	28	2.0	30	81	12	70	37	6	5	50	1.51
2092548--2092573	6	4.3	6	100	0	52	19	30	19	30	1.96
2112077--2112121	19	2.2	19	84	11	54	8	4	17	68	1.32
2116231--2116264	2	17.5	2	93	6	61	47	0	0	52	1.00
2126972--2127052	40	2.0	40	100	0	162	37	17	7	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2131273--2131323	18	2.8	17	80	19	59	54	3	1	39	1.30
2141627--2141651	10	2.5	10	100	0	50	24	0	0	76	0.80
2142851--2142888	2	20.0	2	89	10	62	50	0	0	50	1.00
2143356--2143386	3	10.3	3	100	0	62	32	0	0	67	0.91
2147486--2147592	2	55.5	2	85	7	105	48	0	44	0	1.02
2147689--2147738	6	8.3	6	84	0	55	48	0	50	2	1.12
2147698--2147747	15	3.3	15	80	0	64	44	0	54	2	1.11
2147692--2147745	24	2.3	24	90	3	83	46	0	51	1	1.11
2153387--2153413	13	2.1	13	100	0	54	22	0	25	51	1.48
2153882--2153970	2	44.5	2	82	8	83	41	0	4	49	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106