genome.fa.s2.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  52  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19645479--19645503	13	1.9	13	100	0	50	52	0	0	48	1.00
19657039--19657128	37	2.4	37	98	0	171	45	17	18	17	1.86
19661179--19661223	19	2.4	19	100	0	90	11	44	0	44	1.39
19672749--19672786	20	1.9	19	89	5	58	42	0	15	42	1.47
19675357--19675495	39	3.6	39	89	1	199	23	15	35	25	1.94
19675357--19675534	39	4.7	36	77	11	128	23	13	35	26	1.92
19687724--19687749	2	13.0	2	100	0	52	50	0	0	50	1.00
19692523--19692564	2	21.0	2	100	0	84	50	0	0	50	1.00
19692574--19692611	19	2.0	19	85	10	51	34	2	18	44	1.64
19692684--19692791	38	2.8	37	90	2	144	21	18	37	23	1.95
19694064--19694182	42	2.8	42	88	0	175	26	34	18	20	1.96
19701726--19701790	29	2.2	29	86	5	87	46	21	4	27	1.71
19703670--19704038	185	2.0	184	98	0	711	35	23	8	32	1.85
19705032--19705167	43	3.2	43	95	0	245	25	36	16	22	1.94
19707706--19707800	34	2.8	34	76	6	95	29	10	28	31	1.90
19707957--19707985	14	2.0	15	93	6	51	72	0	27	0	0.85
19710643--19710677	11	3.3	11	88	8	54	0	22	11	65	1.24
19719745--19719770	13	2.0	13	100	0	52	46	0	7	46	1.31
19723319--19723364	20	2.3	20	92	0	74	28	4	19	47	1.68
19730124--19730214	34	2.6	34	86	5	121	29	9	25	35	1.88
19730375--19730412	14	2.7	15	84	12	53	73	0	26	0	0.83
19730372--19730408	19	1.9	19	89	10	58	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19734353--19734429	29	2.6	30	91	2	120	51	19	7	20	1.71
19744327--19744364	20	2.0	20	94	5	69	21	26	15	36	1.93
19755914--19756281	179	2.1	178	80	7	406	38	16	12	32	1.86
19757539--19757658	58	2.1	57	93	1	204	35	10	18	36	1.84
19763381--19763647	68	3.9	68	81	1	284	32	19	9	38	1.84
19763375--19763649	136	2.0	136	83	2	347	32	19	9	38	1.84
19766761--19766944	36	5.1	36	77	9	180	28	20	10	40	1.85
19766760--19766979	72	3.1	70	81	7	228	28	21	10	39	1.87
19768582--19768711	36	3.5	37	77	12	115	38	26	12	22	1.89
19771318--19771371	23	2.3	23	93	0	90	29	40	5	24	1.77
19774270--19774311	21	2.0	21	90	0	66	28	23	33	14	1.94
19775449--19775557	56	1.9	56	100	0	218	23	7	27	41	1.81
19778612--19778637	2	13.0	2	100	0	52	50	0	0	50	1.00
19778766--19778868	38	2.6	39	82	8	122	23	15	37	23	1.93
19778766--19778871	40	2.7	38	82	8	126	23	15	37	23	1.93
19786892--19786994	38	2.6	39	82	8	122	23	15	37	23	1.93
19786892--19786997	40	2.7	38	82	8	126	23	15	37	23	1.93
19792157--19792329	43	4.1	42	83	3	186	21	19	35	23	1.96
19804548--19804793	122	2.0	121	94	2	431	33	14	15	35	1.88
19805642--19805773	39	3.5	37	80	9	151	16	37	5	40	1.71
19807870--19808005	54	2.5	54	84	2	166	27	41	9	22	1.84
19807985--19808108	56	2.4	48	74	20	133	19	32	20	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19808007--19808128	56	2.2	56	89	0	181	21	33	19	25	1.97
19809266--19809462	35	5.7	34	83	5	225	30	23	4	41	1.74
19812899--19812950	22	2.4	22	90	0	77	44	19	5	30	1.74
19812915--19813134	36	6.3	35	80	7	216	44	13	6	36	1.69
19815641--19815678	19	2.0	20	89	5	60	13	28	10	47	1.76
19816553--19816588	2	18.0	2	94	0	63	50	2	0	47	1.15
19820458--19820534	2	38.0	2	86	2	109	49	2	0	46	1.15
19821356--19821471	39	3.1	39	81	3	121	19	39	4	36	1.72
19827372--19827476	38	2.7	39	82	7	124	24	20	35	19	1.96
19827447--19827551	54	1.9	54	90	0	165	20	12	41	25	1.87
19828254--19828304	26	2.0	26	100	0	102	39	5	31	23	1.79
19828804--19828833	15	1.9	16	93	6	53	36	16	13	33	1.88
19829104--19829181	2	39.5	2	93	2	131	47	0	1	50	1.09
19833083--19833216	43	3.1	42	86	3	187	23	32	16	26	1.96
19845406--19845430	13	1.9	13	100	0	50	44	0	8	48	1.32
19849908--19849962	25	2.2	25	86	0	74	25	27	18	29	1.98
19855431--19855717	91	3.0	91	85	11	423	32	15	8	44	1.75
19855493--19855699	102	2.0	102	95	0	369	31	14	7	46	1.72
19856792--19856879	43	2.0	43	95	0	158	42	5	19	32	1.75
19870252--19870292	21	1.9	22	90	5	66	51	7	24	17	1.70
19870252--19870296	20	2.2	21	84	11	58	55	6	22	15	1.63
19870250--19870297	21	2.3	20	79	10	60	56	6	22	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19895831--19895931	38	2.6	38	88	3	139	22	40	16	19	1.91
19895866--19895929	19	3.4	19	68	8	58	20	40	17	21	1.91
19904727--19904772	24	1.9	24	83	16	60	34	8	8	47	1.65
19919627--19919849	49	4.4	50	75	8	204	31	18	17	32	1.94
19920710--19920895	35	5.3	35	81	3	189	45	12	5	36	1.66
19920711--19920888	71	2.6	70	86	5	247	45	12	6	35	1.67
19924535--19924562	14	2.0	14	100	0	56	28	21	7	42	1.79
19939410--19939444	11	3.3	11	88	8	54	0	22	11	65	1.24
19941843--19941867	13	1.9	13	100	0	50	48	8	0	44	1.32
19943742--19943776	19	1.9	18	88	11	54	34	14	11	40	1.82
19944405--19944794	180	2.2	181	85	1	532	33	15	12	39	1.84
19945049--19945094	19	2.4	20	82	10	60	54	0	2	43	1.12
19960058--19960112	2	28.5	2	89	7	87	50	0	1	47	1.11
19960147--19960180	2	17.5	2	93	6	61	47	0	0	52	1.00
19960141--19960182	17	2.5	17	96	3	77	47	0	0	52	1.00
19960149--19960178	15	2.0	15	100	0	60	46	0	0	53	1.00
19961477--19961553	31	2.5	31	95	2	138	40	9	11	38	1.73
19961839--19961883	18	2.5	18	85	0	63	51	0	4	44	1.21
19970904--19971049	35	4.4	32	79	12	143	36	28	12	22	1.90
19970877--19971049	67	2.6	67	87	7	253	36	26	12	24	1.91
19982037--19982175	67	2.1	67	81	8	158	34	23	13	28	1.93
19985580--19985633	20	2.7	19	91	5	81	22	27	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19988801--19988974	36	4.9	36	87	1	217	33	4	16	45	1.67
19990875--19990986	42	2.6	42	90	1	170	22	18	35	23	1.96
19993421--19993534	43	2.7	43	78	8	124	25	18	35	20	1.95
19997583--19997627	16	2.8	17	77	16	51	42	13	0	44	1.43
20008502--20008677	39	4.6	38	82	3	185	25	39	13	22	1.90
20008503--20008677	75	2.3	74	83	3	197	25	39	13	21	1.90
20008502--20008713	114	1.9	113	84	3	282	25	40	13	21	1.90
20011192--20011244	20	2.7	20	77	11	54	30	1	9	58	1.40
20011630--20011708	36	2.3	35	81	10	85	15	11	48	25	1.78
20011710--20011784	36	2.2	36	88	7	111	21	16	32	30	1.95
20011706--20011911	101	2.0	101	89	0	313	21	14	32	31	1.94
20011811--20011885	36	2.2	36	85	7	102	26	14	29	29	1.95
20011965--20012000	2	18.0	2	100	0	72	50	0	0	50	1.00
20018934--20018981	21	2.3	20	79	10	60	14	22	6	56	1.61
20018939--20018979	21	1.9	22	90	5	66	17	24	7	51	1.70
20021458--20021536	33	2.3	34	82	8	90	43	26	16	13	1.86
20024733--20024907	42	4.1	41	82	3	215	24	32	16	26	1.96
20024733--20024909	84	2.1	85	87	5	252	24	31	16	27	1.96
20043481--20043522	21	2.0	21	85	0	57	21	28	16	33	1.95
20058329--20058382	21	2.8	20	75	10	58	44	9	1	44	1.46
20063908--20063948	19	2.2	18	87	12	57	48	7	4	39	1.52
20066961--20067066	39	2.7	40	83	2	133	37	22	17	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20067366--20067409	22	2.0	23	95	4	81	31	45	0	22	1.53
20067401--20067532	43	3.1	43	84	0	156	21	36	19	21	1.95
20071824--20071901	35	2.2	35	97	0	147	28	2	28	41	1.69
20073633--20073665	2	16.5	2	93	0	57	48	0	3	48	1.17
20073710--20073812	38	2.7	38	84	3	125	23	16	36	23	1.94
20077424--20077472	20	2.5	20	96	0	89	46	0	14	38	1.44
20078574--20078635	26	2.4	26	94	0	106	32	40	3	24	1.71
20078870--20078992	42	2.9	42	97	0	228	21	34	22	21	1.97
20086707--20086769	20	3.2	20	90	2	101	30	39	4	25	1.76
20086755--20086920	43	3.9	43	88	3	210	21	36	18	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106