genome.fa.s2.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  77  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29414768--29414823	29	2.0	29	83	16	73	10	10	0	78	0.96
29414768--29414821	10	5.5	10	78	12	51	11	9	0	79	0.93
29414780--29414820	19	2.2	19	87	12	59	9	12	0	78	0.98
29415793--29415861	18	3.8	18	75	13	61	46	0	2	50	1.16
29416594--29416629	2	18.0	2	100	0	72	50	0	0	50	1.00
29423327--29423374	24	2.0	24	88	8	71	45	0	2	52	1.12
29425443--29425529	25	3.4	25	80	1	84	29	12	18	39	1.88
29425460--29425522	25	2.5	25	86	0	90	28	12	15	42	1.84
29428964--29429012	15	3.3	15	81	16	66	24	0	0	75	0.80
29428964--29429043	29	2.8	28	81	9	74	23	0	2	73	0.95
29429764--29429822	22	2.7	22	86	0	73	22	25	22	30	1.99
29430107--29430193	36	2.4	36	92	0	147	24	39	13	22	1.91
29430179--29430262	44	1.9	44	95	0	150	26	34	14	25	1.94
29430360--29430384	2	12.5	2	100	0	50	52	0	0	48	1.00
29433169--29433417	23	10.7	23	74	6	189	21	31	10	36	1.87
29433169--29433427	117	2.2	117	91	4	427	21	32	10	35	1.88
29437407--29437463	27	2.2	26	84	12	73	50	1	0	47	1.11
29437389--29437478	34	2.6	35	74	10	87	57	1	0	41	1.06
29458408--29458433	5	5.2	5	100	0	52	61	0	38	0	0.96
29474167--29474191	10	2.5	10	100	0	50	8	0	0	92	0.40
29475350--29475417	21	3.2	21	87	2	91	38	16	19	26	1.92
29476846--29476884	14	2.9	14	80	3	53	64	5	0	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29477250--29477318	8	8.8	8	81	6	79	28	40	1	28	1.65
29483362--29483434	23	3.1	23	72	4	65	32	9	20	36	1.85
29483413--29483474	26	2.4	26	83	0	70	37	11	12	38	1.80
29488561--29489272	77	9.4	77	76	10	594	26	19	20	33	1.97
29488565--29489273	151	4.7	151	81	6	733	26	19	20	33	1.97
29488561--29489272	228	3.1	220	77	9	614	26	19	20	33	1.97
29492633--29492716	44	2.0	41	84	9	107	28	16	32	22	1.96
29492633--29492726	43	2.2	44	86	1	127	29	15	29	24	1.96
29513240--29513264	13	1.9	13	100	0	50	48	8	0	44	1.32
29514636--29514673	19	2.0	19	94	0	67	42	28	0	28	1.56
29514928--29515419	246	2.0	245	96	0	912	30	21	11	36	1.89
29516958--29517008	15	3.4	15	81	10	59	50	17	1	29	1.57
29517022--29517458	208	2.1	208	90	0	678	24	29	20	25	1.99
29518607--29518631	13	1.9	13	100	0	50	48	8	0	44	1.32
29522367--29522403	19	1.9	19	100	0	74	27	0	29	43	1.55
29531943--29531985	15	2.5	17	82	17	54	72	2	20	4	1.14
29536005--29536075	35	2.0	35	86	0	97	28	11	28	32	1.91
29545230--29545278	21	2.3	21	85	3	62	38	8	28	24	1.84
29545295--29545333	19	2.1	19	90	0	60	7	12	7	71	1.29
29545785--29545817	17	1.9	17	93	0	57	36	24	30	9	1.86
29552047--29552237	96	2.0	95	100	0	373	24	17	23	34	1.96
29553055--29553101	23	2.0	23	91	0	76	34	6	25	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29558602--29558646	2	23.0	2	95	4	83	48	0	0	51	1.00
29558662--29558772	56	2.0	55	98	0	204	30	9	27	31	1.89
29558746--29558829	42	2.0	43	88	2	125	26	20	32	21	1.98
29562195--29562232	19	2.0	19	94	0	67	21	5	23	50	1.69
29564412--29564437	11	2.4	11	100	0	52	65	0	0	34	0.93
29565231--29565344	56	2.0	56	84	0	147	37	10	28	23	1.88
29565460--29565495	12	2.8	13	87	8	56	66	0	33	0	0.92
29577803--29577949	37	4.0	37	95	2	269	29	10	37	22	1.88
29585550--29585671	37	3.3	38	83	5	160	29	10	37	22	1.88
29589551--29589658	40	2.8	37	76	14	110	25	40	12	21	1.88
29591715--29591807	43	2.2	43	94	0	159	24	16	34	24	1.95
29595484--29595524	21	1.9	22	90	5	66	17	24	7	51	1.70
29604552--29604585	17	1.9	18	88	5	52	44	14	5	35	1.70
29608882--29608997	17	6.8	17	77	11	96	2	28	0	68	1.02
29608909--29608984	33	2.3	35	79	11	104	1	27	0	71	0.95
29608890--29609002	50	2.2	50	93	1	190	2	28	0	69	1.02
29608922--29609003	33	2.5	32	81	15	96	2	30	0	67	1.04
29611953--29612129	39	4.6	39	87	3	218	26	35	12	25	1.92
29611962--29612165	78	2.7	74	81	8	232	26	37	12	23	1.90
29613493--29613532	19	2.2	19	95	4	73	42	5	0	52	1.23
29618994--29619054	28	2.2	28	100	0	122	44	19	6	29	1.76
29621562--29621589	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29621566--29621751	95	2.0	94	98	1	363	28	6	25	39	1.80
29621802--29621907	38	2.7	38	86	2	140	22	15	37	24	1.92
29624529--29624571	20	2.2	20	95	0	77	41	0	6	51	1.29
29626131--29626295	42	3.9	42	86	4	226	20	21	33	24	1.97
29626324--29626379	2	28.0	2	75	13	53	42	0	5	51	1.24
29628358--29628396	20	2.0	20	89	0	60	38	7	15	38	1.76
29635386--29635441	21	2.6	21	88	2	67	21	7	23	48	1.74
29635396--29635441	21	2.2	21	96	0	83	21	6	21	50	1.71
29635403--29635466	22	3.0	22	86	2	76	26	9	18	45	1.80
29635476--29635584	23	4.8	23	84	4	132	33	28	12	24	1.92
29635564--29635706	26	5.7	26	78	8	161	37	25	11	24	1.90
29635568--29635719	73	2.1	73	87	0	223	37	26	12	23	1.90
29635564--29635706	47	2.8	50	78	10	139	37	25	11	24	1.90
29635612--29635776	21	7.3	22	73	8	75	40	26	12	21	1.88
29643842--29643882	22	1.9	21	90	5	64	58	7	12	21	1.58
29646847--29646936	36	2.5	36	80	3	92	31	10	22	36	1.87
29647718--29647775	22	2.6	22	91	0	89	41	32	12	13	1.82
29649783--29649917	46	2.9	46	93	0	234	29	27	20	22	1.98
29650740--29650796	26	2.1	27	83	3	71	73	1	3	21	1.07
29651627--29651676	22	2.2	23	82	10	59	50	0	6	44	1.26
29651678--29651732	22	2.5	22	80	11	67	43	7	1	47	1.41
29661850--29661874	13	1.9	13	100	0	50	16	4	8	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29662589--29662639	2	25.5	2	77	15	52	47	3	1	47	1.32
29665339--29665567	35	6.5	35	81	2	224	43	13	6	36	1.71
29665340--29665567	107	2.2	105	84	1	285	43	13	7	36	1.71
29670086--29670120	16	2.2	16	90	10	54	74	0	5	20	1.02
29671672--29671709	18	2.2	18	86	13	53	36	5	0	57	1.21
29672575--29672629	7	7.7	7	80	10	58	21	1	0	76	0.88
29672579--29672646	10	6.0	11	76	15	59	20	2	1	75	1.02
29672806--29672855	16	3.1	16	78	18	50	20	8	0	72	1.10
29672800--29672880	33	2.5	31	80	9	83	19	8	0	71	1.11
29673225--29673267	9	4.6	9	80	8	50	0	20	0	79	0.74
29673217--29673259	18	2.3	19	84	4	61	0	25	0	74	0.82
29673231--29673264	13	2.8	12	86	8	50	0	20	0	79	0.73
29673230--29673366	70	2.0	70	81	11	165	1	32	2	63	1.18
29673889--29673949	17	3.6	16	80	10	68	21	0	0	78	0.75
29673890--29673946	22	2.6	22	86	2	80	22	0	0	77	0.77
29673895--29673949	12	4.8	12	82	8	69	23	0	0	76	0.79
29673890--29673942	5	9.8	5	78	15	52	22	0	0	77	0.77
29680446--29680472	14	1.9	14	100	0	54	7	7	0	85	0.75
29683288--29683332	20	2.2	20	100	0	90	35	17	13	33	1.89
29696350--29696404	24	2.3	24	77	0	56	12	32	14	40	1.84
29696565--29696621	24	2.4	24	82	5	71	35	21	26	17	1.95
29698232--29698283	26	2.0	26	96	0	95	21	13	7	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29698225--29698290	26	2.8	23	79	18	73	22	13	6	57	1.58
29698577--29698649	23	3.2	23	76	1	67	32	13	24	28	1.94
29698706--29698942	23	10.3	23	68	8	92	27	9	29	34	1.88
29698686--29698838	46	3.3	46	69	7	130	24	11	30	33	1.90
29698686--29698858	92	1.9	92	83	4	224	26	11	28	34	1.91
29698964--29699016	23	2.3	23	90	0	79	28	16	28	26	1.97
29701098--29701383	61	4.6	60	71	11	209	38	12	15	33	1.85
29701071--29701383	125	2.5	125	94	1	547	38	11	16	33	1.85
29701281--29701513	110	2.1	110	90	1	369	36	12	15	35	1.86
29701414--29701600	91	2.1	91	92	0	311	37	13	15	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106