genome.fa.s2.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  47  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17637049--17637086	18	2.2	18	86	9	53	68	7	18	5	1.34
17648104--17648210	39	2.7	39	78	5	110	37	14	19	28	1.91
17654097--17654124	14	2.0	14	100	0	56	28	0	21	50	1.49
17656360--17656401	20	2.0	21	86	4	59	30	2	23	42	1.67
17656404--17656545	42	3.4	42	83	7	180	25	20	32	21	1.98
17658567--17659126	279	2.0	279	91	0	915	31	20	15	32	1.94
17662877--17662915	20	1.9	21	85	15	55	30	15	10	43	1.80
17663337--17663421	29	2.8	29	78	5	89	49	15	8	27	1.72
17667202--17667304	38	2.7	38	86	3	125	22	36	17	23	1.94
17672164--17672204	7	6.0	7	83	11	50	24	0	29	46	1.53
17672164--17672203	20	2.0	21	85	14	57	22	0	30	47	1.52
17672436--17672477	7	6.1	7	83	2	50	21	0	33	45	1.52
17672438--17672477	21	2.0	20	90	5	62	20	0	32	47	1.50
17673235--17673360	59	2.2	56	84	6	157	24	15	25	34	1.94
17675767--17675809	19	2.3	19	83	0	50	37	9	13	39	1.78
17685476--17685578	38	2.6	40	87	3	138	20	38	19	21	1.93
17687491--17687550	3	20.7	3	76	19	56	35	38	1	25	1.66
17687489--17687548	23	2.6	23	91	0	93	33	40	1	25	1.66
17687562--17687646	43	2.0	43	83	0	107	21	34	20	24	1.97
17687963--17688022	20	3.0	20	80	7	70	53	0	6	40	1.27
17688954--17688978	13	1.9	13	100	0	50	48	8	0	44	1.32
17691372--17691411	19	2.1	19	86	9	55	42	5	35	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17702217--17702258	20	2.1	20	91	8	68	40	9	33	16	1.81
17703060--17703098	17	2.5	15	87	8	51	79	2	2	15	0.95
17715740--17715928	37	5.1	37	92	0	306	24	35	10	29	1.88
17717528--17717574	24	2.0	24	95	0	85	23	44	10	21	1.83
17723147--17723246	38	2.6	39	82	1	121	34	21	20	25	1.97
17726147--17726216	21	3.3	20	78	9	77	25	4	17	52	1.62
17726157--17726223	21	3.1	21	81	12	91	23	2	16	56	1.54
17726161--17726244	21	3.9	22	80	7	75	29	3	13	53	1.56
17726157--17726244	43	2.0	43	84	4	115	28	3	13	54	1.55
17726506--17726586	20	4.0	21	83	4	94	38	17	12	32	1.87
17726506--17726585	40	2.0	41	85	2	108	38	17	12	31	1.87
17726993--17727057	33	2.0	33	84	3	87	30	12	23	33	1.91
17732847--17732892	22	2.1	22	83	0	56	50	19	8	21	1.75
17736840--17736878	16	2.6	15	88	8	53	82	0	15	2	0.79
17736870--17736928	25	2.3	25	91	2	91	49	13	22	15	1.79
17745144--17745181	14	2.6	15	83	8	51	44	7	15	31	1.75
17745753--17745806	12	4.7	12	78	13	51	1	22	0	75	0.89
17747789--17747826	18	2.1	18	90	9	60	34	5	0	60	1.19
17760239--17760299	2	31.0	2	90	3	97	54	0	0	45	1.00
17760239--17760296	20	2.9	20	100	0	116	55	0	0	44	0.99
17762720--17762756	19	1.9	19	88	0	56	86	8	2	2	0.76
17762720--17762757	10	3.9	10	86	6	51	84	7	5	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17763572--17763631	31	1.9	31	86	0	84	41	5	28	25	1.76
17763574--17763640	31	2.2	31	81	5	73	44	4	28	22	1.72
17766139--17766218	25	3.1	25	73	12	63	27	21	25	26	1.99
17770835--17770876	17	2.5	16	85	14	50	42	0	4	52	1.22
17771152--17771185	16	2.1	16	94	0	59	73	2	11	11	1.20
17777005--17777300	148	2.0	147	95	2	531	29	16	20	33	1.94
17777673--17777748	38	2.0	38	89	0	116	28	34	10	26	1.90
17777679--17777759	38	2.2	37	82	6	94	28	39	9	22	1.86
17778945--17779007	29	2.2	29	100	0	126	30	14	15	39	1.87
17785457--17785554	38	2.6	38	80	1	108	26	31	11	30	1.91
17786447--17786490	22	2.0	21	91	4	70	54	6	27	11	1.61
17789876--17789911	2	18.0	2	94	0	63	47	0	2	50	1.15
17789953--17790078	42	3.0	42	91	2	191	23	35	19	21	1.96
17798159--17798318	55	2.9	55	92	0	266	23	12	35	28	1.91
17806479--17806597	43	2.8	43	84	2	150	23	20	36	20	1.95
17820830--17820869	19	2.0	21	85	9	57	45	20	10	25	1.81
17821020--17821268	82	3.0	83	87	4	385	28	39	11	20	1.88
17821367--17821396	2	15.0	2	100	0	60	50	0	0	50	1.00
17828037--17828081	22	2.0	22	100	0	90	40	4	17	37	1.70
17828091--17828143	17	3.1	17	86	5	70	39	9	13	37	1.77
17828091--17828142	18	2.9	18	88	2	70	40	9	11	38	1.74
17837289--17837341	17	3.1	17	79	15	63	41	9	11	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17837289--17837340	18	2.9	18	81	13	63	42	9	9	38	1.70
17839460--17839501	2	21.0	2	100	0	84	50	0	0	50	1.00
17843434--17843563	27	4.9	27	80	5	138	16	29	23	30	1.97
17843434--17843559	54	2.4	54	85	4	157	16	29	24	29	1.97
17843534--17843634	53	1.9	53	81	0	121	16	32	22	27	1.96
17843567--17843670	27	3.9	26	79	3	118	17	30	25	26	1.97
17843561--17843688	53	2.4	53	85	2	168	17	32	23	26	1.97
17843561--17843752	26	7.3	26	74	6	136	19	31	22	26	1.98
17844533--17844581	25	2.0	25	91	0	80	57	2	22	18	1.51
17863396--17863438	21	2.0	21	86	8	61	0	37	2	60	1.10
17863581--17863615	17	2.1	17	89	5	54	0	17	2	80	0.84
17863860--17863900	19	2.1	21	86	13	61	21	2	0	75	0.92
17863852--17863918	27	2.4	28	80	7	66	22	2	0	74	0.95
17876792--17876908	39	3.2	39	68	22	115	22	7	38	31	1.82
17876799--17876915	33	3.4	33	71	17	110	22	8	37	31	1.84
17877069--17877192	39	3.2	39	77	0	113	15	19	20	44	1.87
17878187--17878217	15	2.1	15	93	0	53	35	3	12	48	1.58
17883946--17884162	43	5.0	43	80	6	233	22	15	37	24	1.93
17883971--17884169	87	2.3	86	92	2	328	21	15	39	24	1.91
17884412--17884454	22	2.0	22	100	0	86	30	23	23	23	1.99
17885240--17885345	53	2.0	53	98	0	203	39	8	28	23	1.84
17886870--17887020	27	5.6	27	72	6	92	17	29	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17887028--17887131	27	3.9	27	78	5	113	14	26	25	33	1.94
17887017--17887133	54	2.2	54	81	9	141	15	27	23	33	1.95
17887196--17887256	26	2.3	26	100	0	122	21	27	21	29	1.98
17888372--17888421	22	2.3	22	76	13	57	42	2	22	34	1.65
17890316--17890345	2	15.0	2	100	0	60	50	0	0	50	1.00
17890646--17890855	107	2.0	107	95	0	375	44	16	19	19	1.87
17895731--17895858	4	32.0	4	91	0	148	40	0	9	50	1.35
17895733--17895856	28	4.6	28	85	11	170	40	0	9	50	1.35
17895732--17895858	24	5.2	24	94	3	227	40	0	9	50	1.35
17909369--17909406	20	1.9	20	94	0	67	34	15	7	42	1.76
17910438--17910484	20	2.5	18	87	12	76	40	19	14	25	1.90
17910445--17910484	20	2.0	20	100	0	80	40	20	15	25	1.90
17917309--17917346	17	2.2	17	95	0	67	63	0	2	34	1.09
17920656--17920866	55	3.8	55	92	0	332	26	36	16	20	1.94
17920669--17920896	55	4.2	53	85	8	225	25	37	16	20	1.93
17921796--17921839	14	2.9	15	80	10	54	70	2	25	2	1.10
17927442--17927491	25	2.0	25	84	0	64	52	24	2	22	1.58
17937681--17937815	30	4.6	29	76	11	132	37	11	8	42	1.73
17937681--17937813	59	2.3	58	78	10	153	36	12	8	42	1.72
17937681--17937822	28	4.8	30	77	12	134	38	11	8	41	1.72
17952900--17952940	21	2.0	21	95	0	73	36	17	24	21	1.94
17952842--17953006	60	2.8	60	80	9	169	29	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17954298--17954479	63	2.9	63	79	0	193	43	15	12	29	1.82
17956986--17957585	86	7.0	86	87	3	904	39	8	7	44	1.62
17956986--17957591	176	3.5	172	89	3	873	39	8	6	44	1.62
17956986--17957584	262	2.3	253	91	3	957	39	8	7	44	1.62
17967385--17967413	14	2.0	15	93	6	51	55	0	13	31	1.39
17967955--17968022	33	2.1	33	83	5	84	5	16	0	77	0.95
17967966--17968024	15	3.9	15	72	14	50	1	20	0	77	0.85
17970822--17970850	3	9.7	3	100	0	58	34	0	31	34	1.58
17971948--17972110	54	3.0	55	92	3	262	22	41	15	20	1.90
17974444--17974501	4	15.2	4	74	16	52	0	25	3	70	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106