genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  102  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38989128--38989162	16	2.2	16	90	10	54	31	0	2	65	1.07
39003263--39003308	23	2.0	23	91	8	76	19	28	0	52	1.47
39004384--39004422	2	20.0	2	94	5	71	48	0	0	51	1.00
39004467--39004516	2	25.0	2	87	0	73	48	0	0	52	1.00
39013729--39013765	18	2.1	18	90	5	58	16	16	0	67	1.23
39024896--39024938	19	2.3	19	79	0	50	48	9	0	41	1.35
39027931--39027979	22	2.2	23	82	10	57	63	2	8	26	1.34
39037624--39037665	13	3.2	13	86	0	57	0	21	0	78	0.75
39051946--39051991	24	2.0	24	91	4	76	63	4	2	30	1.26
39058073--39058225	56	2.7	55	80	4	182	43	18	11	27	1.84
39066282--39066314	2	16.5	2	100	0	66	51	0	0	48	1.00
39066460--39066493	2	17.5	2	93	6	61	50	0	0	50	1.00
39067101--39067146	6	7.8	6	92	2	67	21	63	0	15	1.31
39068737--39068761	3	8.3	3	100	0	50	32	0	0	68	0.90
39069441--39069479	20	2.0	19	85	14	53	51	2	2	43	1.29
39069514--39069580	30	2.2	30	86	0	89	37	2	7	52	1.45
39069836--39069907	30	2.4	30	82	13	94	40	5	2	51	1.40
39072267--39072302	2	18.0	2	88	0	54	44	0	0	55	0.99
39086949--39086986	19	2.0	19	100	0	76	63	10	10	15	1.52
39088376--39088468	14	6.6	14	69	17	52	64	3	1	31	1.16
39088378--39088466	35	2.5	34	82	10	99	64	3	1	31	1.17
39088442--39088585	40	3.6	40	78	0	144	58	13	1	26	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39089292--39089363	26	2.8	26	93	4	119	51	0	0	48	1.00
39089883--39089910	14	2.0	14	100	0	56	21	0	7	71	1.09
39108452--39108509	23	2.6	21	78	15	55	39	10	3	46	1.55
39108595--39108657	32	2.0	32	90	0	99	34	22	20	22	1.96
39110180--39110255	2	38.5	2	77	12	77	43	3	3	48	1.40
39110337--39110375	21	1.9	20	84	5	51	48	5	0	46	1.24
39115150--39115181	2	16.5	2	93	6	57	46	0	0	53	1.00
39115365--39115595	114	2.0	114	98	1	446	31	12	6	50	1.64
39116068--39116106	11	3.5	11	86	13	53	0	15	0	84	0.62
39116071--39116102	10	3.2	10	95	0	55	0	12	0	87	0.54
39116071--39116111	16	2.6	16	84	7	57	0	17	0	82	0.66
39116147--39116188	13	3.4	13	80	9	52	0	33	0	66	0.92
39116007--39116187	75	2.5	75	78	9	205	1	34	2	61	1.17
39116214--39116249	13	2.6	14	91	4	56	2	41	2	52	1.30
39122766--39122843	32	2.5	32	87	2	104	39	19	15	25	1.91
39124041--39124078	12	3.2	12	82	10	51	50	2	0	47	1.15
39123983--39124249	134	2.0	136	83	7	346	44	3	7	44	1.49
39124379--39124430	22	2.3	23	86	3	70	42	7	0	50	1.31
39136500--39136580	41	2.0	41	92	0	135	41	2	13	41	1.57
39137157--39137196	18	2.2	19	86	13	57	75	2	2	20	1.04
39145545--39145585	16	2.6	16	84	0	55	46	9	14	29	1.77
39151797--39151839	21	2.0	21	86	8	61	23	30	44	2	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39152105--39152135	10	3.2	10	95	4	55	93	0	6	0	0.35
39152107--39152136	15	2.0	15	93	0	51	90	0	10	0	0.47
39153025--39153060	14	2.6	14	91	8	56	77	0	2	19	0.88
39153153--39153186	17	2.0	17	100	0	68	52	0	0	47	1.00
39153768--39153810	18	2.3	19	84	12	61	55	4	0	39	1.20
39153766--39153835	26	2.7	27	75	16	76	54	2	0	42	1.15
39156278--39156332	22	2.5	22	90	0	92	23	7	20	49	1.74
39156342--39156409	26	2.6	26	88	0	91	23	7	20	48	1.74
39156417--39156488	23	3.1	23	84	7	92	26	12	25	36	1.91
39157359--39157396	19	2.0	20	89	5	60	68	0	0	31	0.90
39159559--39159760	101	2.0	101	100	0	404	33	21	16	27	1.95
39161878--39162029	36	4.2	36	83	3	164	44	14	5	35	1.68
39169403--39169432	15	1.9	16	93	6	53	73	0	0	26	0.84
39183622--39183663	22	1.9	22	100	0	84	61	0	0	38	0.96
39183622--39183669	22	2.2	22	92	0	78	62	2	0	35	1.07
39188799--39188830	15	2.1	15	94	0	55	56	0	0	43	0.99
39193462--39193487	3	8.7	3	100	0	52	69	30	0	0	0.89
39211785--39211824	2	20.0	2	94	0	71	50	0	2	47	1.14
39215690--39215749	30	2.0	30	100	0	120	26	6	6	60	1.47
39217746--39217803	29	2.0	29	80	12	66	50	1	0	48	1.11
39217986--39218030	20	2.2	20	84	0	54	31	4	0	64	1.13
39218590--39218622	17	1.9	17	93	0	57	42	6	21	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39222272--39222323	21	2.5	21	87	0	77	17	13	30	38	1.88
39222315--39222421	26	4.1	26	90	0	151	25	7	24	42	1.80
39222458--39222592	23	5.6	26	81	11	112	22	11	29	36	1.90
39222363--39222546	95	1.9	95	87	0	269	24	12	27	35	1.91
39222532--39222593	23	2.7	23	94	0	115	20	12	30	35	1.91
39222604--39222683	22	3.7	22	80	6	92	45	17	11	26	1.82
39222693--39222741	22	2.2	22	92	0	80	46	24	4	24	1.69
39225946--39226111	29	5.9	28	71	18	94	40	15	13	31	1.85
39226063--39226124	29	2.2	29	82	5	74	40	17	6	35	1.76
39241573--39241618	23	2.0	23	87	8	67	23	0	0	76	0.79
39246037--39246077	19	2.2	19	100	0	82	0	0	19	80	0.71
39246043--39246084	19	2.2	19	86	0	57	4	2	19	73	1.12
39250264--39250304	2	20.5	2	94	0	73	46	0	2	51	1.14
39295549--39295646	49	2.0	49	95	0	178	28	11	17	42	1.83
39316270--39316367	46	2.1	46	81	7	110	42	12	15	29	1.83
39321453--39321517	21	3.2	21	67	8	62	33	26	10	29	1.90
39325428--39325452	3	8.3	3	100	0	50	68	0	32	0	0.90
39326013--39326224	80	2.6	81	81	7	234	42	13	12	30	1.82
39326094--39326245	81	1.9	81	84	5	209	41	11	14	32	1.81
39326012--39326265	81	3.2	81	78	4	203	44	13	12	30	1.80
39326437--39326489	22	2.4	22	75	6	54	43	11	0	45	1.40
39330448--39330496	20	2.5	20	96	0	89	53	4	20	22	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39332457--39332588	51	2.5	53	83	13	182	27	22	13	36	1.92
39332982--39333089	57	1.9	57	83	7	139	45	6	3	44	1.47
39333032--39333285	81	3.2	80	83	6	295	43	5	7	43	1.55
39339434--39339654	42	5.5	41	67	19	133	42	3	1	53	1.25
39339534--39339586	27	2.0	26	85	3	70	47	1	3	47	1.31
39339424--39339716	159	1.9	155	89	4	453	39	3	2	54	1.27
39342894--39342919	3	8.7	3	100	0	52	34	0	0	65	0.93
39343689--39343714	11	2.4	11	100	0	52	0	15	0	84	0.62
39353824--39353865	7	6.7	6	80	20	50	2	16	0	80	0.81
39357061--39357117	28	2.0	29	86	3	80	64	0	1	33	1.04
39363835--39363872	2	19.0	2	100	0	76	0	50	0	50	1.00
39387014--39387046	5	6.4	5	93	6	57	81	0	0	18	0.68
39387014--39387043	11	2.8	11	95	5	53	83	0	0	16	0.65
39387012--39387046	16	2.2	16	100	0	70	80	0	0	20	0.72
39387136--39387166	15	2.1	15	93	0	53	83	0	3	12	0.75
39387197--39387271	34	2.2	32	80	15	80	52	1	1	45	1.17
39387209--39387385	27	7.6	23	72	17	102	45	0	2	51	1.20
39387180--39387407	114	2.0	115	85	6	315	42	0	2	54	1.17
39387318--39387375	27	2.2	27	96	3	109	46	0	3	50	1.18
39387236--39387408	87	2.0	85	80	13	192	42	0	2	55	1.12
39387358--39387444	41	2.2	39	83	6	111	39	1	2	57	1.19
39387207--39387435	114	2.0	112	84	9	295	41	0	2	55	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39387470--39387537	22	2.8	25	79	16	72	48	0	2	48	1.16
39387475--39387527	27	2.0	26	88	3	79	49	0	3	47	1.19
39387531--39387621	25	3.6	25	82	11	132	37	2	2	58	1.23
39387244--39387566	152	2.1	155	87	4	469	40	1	2	55	1.22
39387521--39387633	50	2.3	49	98	1	217	39	1	1	56	1.20
39387244--39387625	152	2.5	151	80	9	393	39	1	2	56	1.22
39387665--39387721	27	2.2	26	90	6	89	43	0	3	52	1.18
39387799--39387852	25	2.1	26	86	3	74	38	3	0	57	1.17
39390267--39390299	6	5.5	6	96	0	57	30	18	51	0	1.46
39392316--39392388	30	2.5	29	79	12	87	36	1	0	61	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106