genome.fa.s2.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  20  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8849685--8849718	10	3.5	10	88	4	52	73	0	2	23	0.97
8849679--8849715	19	2.0	18	89	5	56	72	0	2	24	0.97
8850243--8850275	17	2.0	16	94	5	57	36	6	0	57	1.23
8850851--8850884	17	2.0	17	88	0	50	55	0	5	38	1.24
8866249--8866294	2	23.5	2	95	4	85	50	0	0	50	1.00
8871314--8871370	28	2.1	27	87	6	80	26	0	10	63	1.27
8875492--8875530	3	13.0	3	94	0	69	33	2	0	64	1.08
8879097--8879126	15	2.0	15	93	0	51	63	0	0	36	0.95
8879078--8879169	22	4.4	21	73	18	66	57	2	0	40	1.11
8879078--8879169	42	2.2	43	86	3	125	57	2	0	40	1.11
8879139--8879192	27	2.0	27	92	0	90	50	5	0	44	1.25
8879217--8879279	22	2.7	24	82	9	85	50	0	0	49	1.00
8879448--8879499	27	1.9	27	92	0	86	32	3	1	61	1.25
8885138--8885186	24	2.0	24	100	0	98	36	30	4	28	1.76
8890837--8890884	15	3.2	15	93	0	78	18	2	22	56	1.52
8890895--8890975	30	2.7	31	78	5	103	29	16	18	35	1.92
8891198--8891284	36	2.5	35	86	3	113	44	19	17	18	1.87
8891209--8891311	34	3.0	34	85	2	116	42	22	16	18	1.89
8897221--8897270	22	2.3	22	96	0	91	46	26	4	24	1.70
8901810--8902006	58	3.4	58	86	0	223	23	14	35	25	1.94
8901950--8902161	47	4.5	47	80	3	248	25	19	30	24	1.98
8902212--8902393	31	5.9	31	91	0	274	23	17	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8903787--8904054	145	1.8	145	80	0	320	29	20	20	29	1.97
8904473--8904516	21	2.1	21	87	8	63	20	15	40	22	1.90
8904887--8905333	118	3.8	117	82	5	519	29	25	22	22	1.99
8908916--8909119	31	6.6	31	90	0	275	38	17	19	25	1.93
8909470--8909575	54	2.0	54	88	0	158	31	14	33	21	1.93
8909543--8909584	9	4.7	9	77	11	50	33	4	40	21	1.74
8926383--8926481	31	3.2	31	92	1	164	40	21	17	21	1.91
8926467--8926494	14	2.0	14	100	0	56	42	14	21	21	1.88
8926406--8926556	76	2.0	76	93	0	257	40	17	19	22	1.91
8926436--8926526	45	2.0	45	95	0	164	39	16	20	23	1.92
8926481--8926571	31	2.9	31	91	0	146	39	18	19	21	1.92
8926596--8926716	64	1.9	63	81	5	145	33	21	16	28	1.95
8926919--8927023	54	1.9	54	90	0	165	31	15	32	20	1.94
8942933--8943148	110	2.0	110	89	0	333	35	16	5	43	1.71
8945144--8945197	25	2.1	27	82	6	67	44	0	7	48	1.31
8952974--8953027	25	2.1	27	82	6	67	44	0	7	48	1.31
8954243--8954300	30	1.9	30	92	0	98	48	5	10	36	1.60
8954859--8954892	2	17.5	2	93	6	61	0	50	0	50	1.00
8960535--8960590	21	2.8	20	74	15	53	44	5	1	48	1.36
8972400--8972541	21	6.8	21	85	0	149	23	24	26	24	2.00
8972400--8972541	63	2.3	63	84	0	176	23	24	26	24	2.00
8972400--8972538	42	3.3	42	85	0	179	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8973358--8973447	39	2.3	38	84	7	110	16	47	2	33	1.59
8973744--8973804	24	2.5	24	81	0	77	0	22	36	40	1.55
8973749--8973789	12	3.4	12	82	0	55	0	17	39	43	1.49
8976210--8976260	14	3.5	15	78	13	61	33	1	1	62	1.17
8976209--8976263	28	2.0	28	92	0	92	32	1	1	63	1.15
8977085--8977137	12	4.9	11	77	22	51	24	1	0	73	0.93
8977089--8977151	20	2.9	22	81	13	69	23	6	0	69	1.11
8977081--8977136	29	2.0	28	82	10	69	23	1	0	75	0.90
8977090--8977151	21	2.9	21	86	11	74	24	6	0	69	1.12
8977117--8977159	23	1.9	22	85	4	59	25	11	0	62	1.29
8983999--8984140	29	4.9	28	83	6	176	39	13	8	38	1.75
8983986--8984140	59	2.7	58	85	4	213	41	12	7	38	1.71
8988377--8988453	38	2.0	38	100	0	154	33	10	23	32	1.89
9006854--9006887	14	2.5	13	86	9	50	67	5	0	26	1.13
9007967--9008033	33	2.0	33	100	0	134	46	5	0	47	1.27
9008112--9008136	2	12.5	2	100	0	50	48	0	0	52	1.00
9009377--9009429	20	2.5	22	84	12	74	22	0	5	71	1.06
9013932--9013982	2	25.5	2	88	7	77	45	0	1	52	1.12
9013922--9013981	19	3.3	18	78	17	70	46	0	1	51	1.10
9013929--9013982	19	2.8	19	86	10	83	44	0	1	53	1.11
9013922--9013982	13	4.4	15	80	15	78	45	0	1	52	1.10
9013932--9013982	17	3.2	16	89	8	77	45	0	1	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9014379--9014432	23	2.3	23	81	12	58	37	5	12	44	1.66
9024154--9024204	2	25.5	2	100	0	102	50	0	0	49	1.00
9025681--9025705	2	12.5	2	100	0	50	0	48	0	52	1.00
9030595--9030647	25	2.1	25	82	6	63	52	1	0	45	1.11
9030605--9030665	25	2.5	25	83	2	70	62	1	0	36	1.05
9030612--9030665	25	2.2	25	86	0	72	62	0	0	37	0.95
9036050--9036136	31	2.7	32	89	5	131	43	13	8	34	1.74
9039616--9039646	2	15.5	2	100	0	62	48	0	0	51	1.00
9046344--9046383	19	2.1	19	90	0	62	42	15	5	37	1.68
9047125--9047220	50	1.9	50	86	0	138	27	10	21	40	1.86
9050610--9050675	29	2.3	29	84	7	82	25	6	21	46	1.74
9052091--9052349	129	2.0	129	88	4	389	23	18	30	27	1.98
9055605--9055661	4	15.8	4	82	17	72	24	0	0	75	0.80
9055605--9055661	29	2.0	29	92	0	96	24	0	0	75	0.80
9055607--9055666	7	8.3	7	83	5	66	23	0	0	76	0.78
9061961--9062000	17	2.4	16	84	8	53	52	2	0	45	1.14
9062697--9062794	9	12.0	8	75	18	71	28	2	0	69	1.00
9062732--9062794	3	21.7	3	84	12	87	26	1	0	71	0.95
9062688--9062823	5	25.6	5	77	12	80	25	2	0	70	1.06
9063901--9063973	38	1.9	38	91	0	119	45	10	24	19	1.82
9064156--9064193	18	2.1	18	90	9	60	26	7	18	47	1.76
9065646--9065688	21	2.0	23	82	17	56	79	0	18	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9066366--9066422	28	2.0	28	86	6	80	49	1	1	47	1.22
9066388--9066461	37	2.0	39	86	7	109	51	1	0	47	1.09
9066458--9066509	19	2.7	19	72	3	50	55	0	5	38	1.24
9069666--9069828	81	2.0	81	96	0	299	48	14	3	33	1.60
9071769--9071797	13	2.2	13	100	0	58	31	17	13	37	1.89
9073258--9073295	20	1.9	20	94	0	67	47	7	0	44	1.32
9073553--9073600	17	2.9	17	87	12	73	70	6	2	20	1.19
9074112--9074159	2	23.5	2	91	4	78	50	2	0	47	1.12
9076190--9076227	18	2.1	18	95	0	67	34	13	5	47	1.65
9076698--9076740	22	2.0	22	85	0	59	51	30	6	11	1.65
9081625--9081763	40	3.5	40	84	1	179	58	16	1	23	1.45
9081676--9081753	20	3.8	21	71	20	65	61	17	1	19	1.41
9081668--9081728	20	3.0	20	72	25	65	59	16	0	24	1.37
9094930--9094978	23	2.1	23	92	0	80	26	18	14	40	1.89
9097552--9097970	59	7.1	58	84	4	516	36	19	11	32	1.88
9097548--9097970	119	3.6	117	83	3	542	36	19	11	32	1.88
9097534--9097977	178	2.5	178	89	1	685	36	20	11	32	1.88
9115034--9115072	2	19.5	2	100	0	78	51	48	0	0	1.00
9115072--9115106	2	17.5	2	100	0	70	51	0	0	48	1.00
9116058--9116116	2	29.5	2	83	13	77	52	1	0	44	1.11
9117446--9117556	23	4.8	23	74	6	100	25	21	24	28	1.99
9117488--9117600	46	2.5	46	82	2	120	25	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9117563--9117610	23	2.1	23	92	0	78	22	10	29	37	1.88
9118964--9119019	22	2.7	20	81	18	69	71	5	0	23	1.06
9118964--9119055	20	4.7	20	71	23	70	69	3	0	27	1.04
9119665--9119723	28	2.2	27	85	11	77	66	1	32	0	1.02
9119782--9119827	24	1.9	24	90	0	74	60	0	36	2	1.09
9126567--9126626	30	2.0	29	83	3	75	53	8	8	30	1.60
9126738--9126805	30	2.3	30	84	0	82	35	8	4	51	1.53
9126867--9126933	33	2.0	33	85	0	89	37	7	14	40	1.75
9130256--9130282	14	1.9	14	100	0	54	66	7	3	22	1.33
9131587--9131857	135	2.0	135	84	4	350	29	11	33	25	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106