genome.fa.s2.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  79  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30123014--30123184	42	4.0	42	83	2	191	21	33	18	25	1.96
30129500--30129543	22	2.0	23	90	4	72	25	29	22	22	1.99
30129801--30129915	43	2.7	43	87	2	160	20	37	16	25	1.93
30131837--30131882	21	2.2	21	84	3	67	26	26	6	41	1.80
30132424--30132456	8	4.1	8	96	0	57	72	0	27	0	0.85
30132422--30132458	8	4.9	8	83	12	51	70	0	29	0	0.88
30132652--30132684	2	16.5	2	100	0	66	48	0	0	51	1.00
30138594--30138626	2	17.0	2	87	6	50	51	0	3	45	1.16
30138825--30138855	2	15.5	2	100	0	62	48	0	0	51	1.00
30139167--30139204	2	19.0	2	100	0	76	0	50	0	50	1.00
30144495--30144540	3	15.3	3	90	0	74	67	0	2	30	1.03
30162731--30162818	39	2.3	39	86	4	124	26	21	6	45	1.76
30162626--30162810	98	1.9	98	91	0	307	27	19	6	47	1.74
30165313--30165365	28	1.9	27	88	3	79	28	22	18	30	1.98
30165410--30165455	20	2.3	20	88	7	67	45	17	4	32	1.68
30173352--30173404	28	1.9	27	88	3	79	26	18	20	33	1.96
30174851--30174923	36	2.0	36	84	5	94	17	23	6	52	1.69
30174888--30175252	142	2.6	141	76	8	357	25	26	6	41	1.78
30177324--30177375	2	26.0	2	100	0	104	50	0	0	50	1.00
30177808--30177875	8	9.6	7	76	17	52	77	1	1	19	0.92
30177808--30177869	14	4.4	15	73	15	53	77	1	1	19	0.94
30177813--30177874	17	3.7	16	77	12	54	77	1	1	19	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30177819--30177876	9	6.6	9	72	18	50	77	1	1	18	0.94
30178405--30178458	26	2.1	25	86	13	74	68	0	31	0	0.90
30178403--30178473	26	2.8	24	74	17	72	70	0	29	0	0.88
30179689--30179744	12	4.7	12	76	8	60	23	1	0	75	0.90
30179689--30179770	24	3.4	24	74	19	71	23	3	1	71	1.08
30179705--30179771	30	2.3	28	82	12	73	22	4	1	71	1.12
30179863--30179923	9	7.0	8	81	17	68	22	1	0	75	0.89
30179857--30179922	27	2.4	27	83	11	82	24	1	0	74	0.91
30179857--30179923	18	3.8	17	86	7	89	23	1	0	74	0.90
30179860--30179952	35	2.7	34	78	14	102	24	2	1	72	1.03
30180184--30180287	48	2.1	48	81	15	117	30	3	0	64	1.18
30180207--30180291	15	5.5	15	71	20	61	25	3	1	69	1.12
30180465--30180522	28	2.1	28	96	0	107	27	3	12	56	1.51
30190511--30190556	15	3.1	15	90	9	69	58	13	0	28	1.35
30191963--30191987	13	1.9	13	100	0	50	48	8	0	44	1.32
30197988--30198027	19	2.0	20	95	4	73	42	27	0	30	1.56
30200413--30200459	20	2.4	20	85	3	60	51	0	2	46	1.13
30201237--30201327	34	2.7	35	84	3	123	24	12	27	36	1.91
30201422--30201500	34	2.3	34	91	0	122	18	13	30	36	1.90
30201172--30201534	181	2.0	180	92	0	600	30	12	27	30	1.92
30201619--30201684	34	2.0	34	82	8	82	42	15	16	25	1.87
30201816--30201858	5	8.6	5	94	0	77	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30206008--30206056	21	2.3	21	89	6	73	40	12	14	32	1.83
30210452--30210528	28	2.8	28	91	0	118	31	10	23	35	1.88
30229310--30229438	2	64.5	2	76	14	106	49	1	4	43	1.32
30231095--30231133	18	2.1	18	85	9	51	25	2	0	71	0.98
30231528--30231568	12	3.3	12	86	6	55	70	0	0	29	0.87
30234821--30234849	14	2.0	15	93	6	51	0	17	0	82	0.66
30236583--30236842	126	2.1	127	91	0	414	41	14	7	36	1.73
30239652--30239861	37	5.6	38	91	1	318	41	20	16	21	1.90
30240006--30240037	12	2.4	14	90	10	50	18	0	0	81	0.70
30245771--30245833	17	3.3	19	71	13	58	4	52	7	34	1.52
30245762--30245836	21	3.7	21	71	21	70	5	50	6	37	1.51
30245771--30245844	38	1.9	38	97	0	139	5	51	9	33	1.57
30245771--30245859	38	2.4	38	88	3	119	7	46	8	37	1.65
30248143--30248195	3	16.3	3	77	14	52	33	0	0	66	0.92
30248143--30248195	10	5.4	10	79	20	51	33	0	0	66	0.92
30248143--30248185	20	2.2	20	95	4	79	34	0	0	65	0.93
30251928--30251975	14	3.1	14	74	25	51	45	8	0	45	1.33
30252046--30252115	30	2.3	29	83	7	79	47	5	12	34	1.66
30260770--30260794	2	12.5	2	100	0	50	52	0	0	48	1.00
30261495--30261522	5	5.6	5	100	0	56	0	21	39	39	1.54
30279622--30279688	34	1.9	34	84	3	89	47	5	17	28	1.71
30286738--30286811	23	3.3	23	83	5	80	37	2	2	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30286740--30286813	22	3.3	21	80	10	76	36	2	2	58	1.27
30286896--30286951	27	2.2	25	87	6	76	41	0	5	53	1.24
30286896--30286966	27	2.7	26	81	12	74	42	0	4	53	1.20
30287151--30287181	16	1.9	16	93	0	53	48	0	3	48	1.17
30287208--30287250	21	2.0	21	86	8	61	46	0	0	53	1.00
30287211--30287321	14	8.2	15	66	21	50	46	0	0	51	1.13
30287193--30287348	79	2.0	77	97	2	294	44	1	1	52	1.17
30287266--30287321	14	3.9	14	75	11	51	42	0	0	57	0.99
30287285--30287329	22	2.1	21	84	12	56	48	0	0	51	1.00
30287852--30287936	39	2.2	39	95	0	152	47	1	9	42	1.43
30287932--30288004	20	3.8	19	70	23	64	52	4	1	42	1.29
30288762--30288809	25	2.0	24	91	4	78	52	2	0	45	1.12
30288835--30288884	15	3.5	15	78	8	59	40	2	0	58	1.10
30289091--30289124	17	2.1	16	88	5	50	23	55	0	20	1.43
30292058--30292123	28	2.4	27	92	5	105	24	4	22	48	1.69
30293045--30293730	340	2.0	343	86	3	961	33	10	9	47	1.69
30301735--30301774	21	1.9	20	85	10	53	60	0	2	37	1.11
30315277--30315318	21	2.0	21	85	0	57	52	2	14	30	1.54
30318307--30318336	6	5.0	6	100	0	60	16	0	66	16	1.25
30328952--30328984	17	1.9	17	88	11	50	39	3	15	42	1.62
30336455--30336497	18	2.4	18	96	0	77	18	25	4	51	1.66
30341846--30341871	6	4.3	6	100	0	52	30	19	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30350869--30350951	41	2.0	41	100	0	166	28	12	14	44	1.81
30352358--30352397	18	2.2	18	95	0	71	45	20	7	27	1.78
30352947--30353004	18	3.2	18	72	0	62	37	22	3	36	1.71
30358723--30358769	19	2.6	18	80	9	60	53	0	6	40	1.27
30359704--30359735	7	4.9	7	85	14	50	78	0	21	0	0.76
30361111--30361157	19	2.6	19	86	6	71	40	0	0	59	0.97
30366286--30366325	20	2.0	21	90	5	64	70	7	2	20	1.24
30373596--30373640	20	2.2	20	92	0	72	44	4	11	40	1.60
30378032--30378073	18	2.3	18	80	8	50	73	0	23	2	0.94
30386510--30386565	26	2.2	26	84	12	71	39	1	0	58	1.08
30395230--30395270	21	1.9	22	90	5	66	51	7	24	17	1.70
30395230--30395274	20	2.2	21	84	11	58	55	6	22	15	1.63
30395228--30395275	21	2.3	20	79	10	60	56	6	22	14	1.61
30398025--30398103	19	4.2	19	93	0	131	36	13	13	35	1.85
30407233--30407385	36	4.3	36	80	5	159	30	9	26	33	1.89
30407237--30407385	72	2.1	71	89	1	226	29	10	26	34	1.89
30415932--30415969	20	1.9	19	89	5	58	52	2	2	42	1.29
30421276--30421317	22	2.0	22	85	4	59	38	9	2	50	1.48
30425798--30425870	36	2.1	35	87	5	103	27	0	9	63	1.26
30436747--30436777	16	1.9	16	93	0	53	19	3	3	74	1.10
30441165--30441337	22	7.7	23	82	8	205	29	12	19	38	1.89
30441165--30441337	23	7.8	22	82	8	183	29	12	19	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30446377--30446422	21	2.2	21	96	0	83	47	0	26	26	1.52
30446637--30446683	21	2.2	21	84	0	58	23	17	34	25	1.96
30447516--30447561	22	2.1	22	100	0	92	36	4	13	45	1.63
30449157--30449221	24	2.7	24	75	0	76	24	18	27	29	1.98
30449920--30450397	31	15.4	31	81	0	506	26	14	32	26	1.94
30451733--30451916	81	2.3	81	84	0	242	21	29	21	27	1.98
30454285--30454452	31	5.5	31	82	2	196	36	19	13	30	1.89
30454284--30454454	93	1.8	92	87	3	254	36	19	13	30	1.90
30454468--30454653	87	2.1	87	81	2	212	32	26	15	24	1.95
30455117--30455200	23	3.7	23	83	0	69	23	26	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106