genome.fa.s2.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  8  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782391--3782571	51	3.7	51	68	17	132	51	1	0	47	1.08
3782438--3782538	26	3.7	28	75	12	77	42	0	0	57	0.98
3782452--3782514	29	2.2	28	81	18	76	41	0	0	58	0.98
3782479--3782530	18	3.0	18	86	8	72	38	0	0	61	0.96
3782463--3782544	44	1.9	42	87	9	121	39	0	0	60	0.96
3782500--3782540	18	2.3	18	86	0	55	41	0	0	58	0.98
3788802--3788835	16	2.1	16	88	0	50	47	2	0	50	1.16
3804968--3804996	14	2.0	15	93	6	51	48	0	0	51	1.00
3805073--3805097	13	1.9	13	100	0	50	52	0	0	48	1.00
3806641--3806693	27	2.0	27	84	0	70	45	3	5	45	1.45
3811314--3811387	30	2.5	31	78	8	84	31	4	0	64	1.12
3817471--3817514	22	2.0	22	86	8	63	40	6	4	47	1.50
3819088--3819144	27	2.1	27	100	0	114	52	3	19	24	1.61
3819425--3819468	17	2.6	17	86	10	56	75	9	0	15	1.05
3819425--3819463	16	2.4	16	87	12	53	79	7	0	12	0.93
3819608--3819658	8	6.2	8	82	13	52	66	0	0	33	0.92
3819606--3819669	25	2.8	22	76	23	53	71	0	0	28	0.86
3819758--3819852	15	6.5	15	72	12	65	66	1	5	27	1.20
3819758--3819844	14	6.2	13	74	18	59	67	1	4	26	1.17
3819794--3819844	17	3.1	17	77	8	52	70	1	0	27	0.98
3835462--3835529	21	3.2	21	77	4	66	29	1	33	35	1.67
3835484--3835519	15	2.4	15	85	0	54	30	0	30	38	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3841550--3841594	23	1.9	24	86	4	65	28	11	13	46	1.77
3841549--3841601	23	2.3	22	78	12	61	32	9	13	45	1.75
3842155--3842218	29	2.2	29	94	0	110	26	25	14	34	1.94
3842471--3842495	4	6.2	4	100	0	50	48	0	0	52	1.00
3860836--3860861	2	13.0	2	100	0	52	0	0	50	50	1.00
3867118--3867148	16	2.0	16	93	6	55	67	6	19	6	1.35
3870452--3870489	2	19.0	2	100	0	76	50	0	0	50	1.00
3870606--3870659	28	2.0	28	85	3	74	38	0	1	59	1.08
3870618--3870681	29	2.2	29	78	8	67	34	0	3	62	1.11
3870859--3870937	31	2.6	31	80	13	76	56	0	0	43	0.99
3883695--3883723	1	29.0	1	100	0	58	0	100	0	0	0.00
3886514--3886564	24	2.2	23	85	3	66	45	0	3	50	1.20
3901148--3901188	12	3.5	12	93	3	66	80	7	0	12	0.90
3901942--3901970	14	2.1	14	100	0	58	72	6	0	20	1.07
3902969--3903126	21	7.3	21	67	13	79	40	4	12	42	1.63
3904436--3904505	29	2.4	29	80	4	79	60	8	11	20	1.57
3905235--3905270	15	2.2	18	85	14	51	2	19	2	75	1.06
3911799--3911830	2	16.0	2	100	0	64	50	0	50	0	1.00
3918139--3918170	17	1.9	17	93	6	57	34	3	0	62	1.11
3938912--3938946	18	1.9	18	100	0	70	34	17	34	14	1.90
3939996--3940034	16	2.4	17	91	4	62	33	7	2	56	1.41
3940062--3940109	14	3.5	13	76	15	51	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3945389--3945466	29	2.7	29	86	7	115	62	1	0	35	1.03
3946068--3946130	14	4.6	13	75	14	56	58	3	3	34	1.30
3946488--3946535	2	24.5	2	95	4	89	52	0	0	47	1.00
3946936--3946986	19	2.8	18	82	5	66	43	0	3	52	1.19
3947655--3947692	18	2.1	18	90	0	58	31	0	2	65	1.06
3948120--3948161	22	1.9	22	85	0	57	16	26	7	50	1.71
3948515--3948586	28	2.6	28	80	12	78	44	9	9	36	1.70
3948541--3948617	29	2.7	29	84	4	95	36	10	12	40	1.78
3948631--3948727	45	2.2	45	85	7	126	32	17	16	32	1.92
3948678--3948805	68	1.9	68	88	3	195	30	15	17	35	1.92
3948765--3948843	24	3.3	24	83	0	95	29	8	17	44	1.79
3948701--3948874	92	1.9	92	87	3	260	29	13	17	39	1.88
3969893--3969925	2	16.5	2	93	0	57	51	0	0	48	1.00
3982548--3982576	14	2.0	15	93	6	51	82	0	0	17	0.66
3991576--3991622	25	1.9	24	86	4	67	57	0	2	40	1.11
3992601--3992631	16	1.9	16	93	0	53	48	0	0	51	1.00
3993531--3993575	21	2.3	21	77	11	51	51	2	4	42	1.34
4043715--4043774	28	2.1	29	84	3	77	23	10	25	41	1.85
4047438--4047482	2	22.5	2	100	0	90	51	0	0	48	1.00
4070414--4070443	15	2.0	15	100	0	60	66	0	0	33	0.92
4071758--4071796	13	3.0	13	96	0	69	23	2	23	51	1.61
4092498--4092531	15	2.3	15	90	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4093478--4093575	35	2.8	35	100	0	196	40	0	8	51	1.32
4108522--4108559	2	19.0	2	88	0	58	44	0	2	52	1.14
4115269--4115325	30	1.9	30	86	10	82	45	1	0	52	1.11
4115534--4115570	18	2.1	17	90	5	56	45	0	0	54	1.00
4118332--4118358	2	13.5	2	100	0	54	51	0	0	48	1.00
4119851--4120068	27	8.0	27	76	8	140	31	18	20	29	1.96
4119866--4120051	54	3.4	53	75	12	164	30	18	20	30	1.96
4138461--4138536	39	1.9	39	81	5	91	35	5	6	52	1.50
4139048--4139106	30	1.9	31	89	3	93	33	6	0	59	1.24
4139048--4139134	33	2.8	30	82	8	102	33	9	0	57	1.30
4141733--4141791	30	2.0	30	89	0	91	35	11	11	40	1.79
4149054--4149083	14	2.1	14	100	0	60	80	13	0	6	0.91
4152437--4152470	2	17.0	2	100	0	68	0	50	0	50	1.00
4159434--4159485	3	17.3	3	83	0	50	53	0	38	7	1.30
4159446--4159495	15	3.3	15	82	0	64	50	0	36	14	1.43
4159434--4159511	30	2.8	28	81	11	97	52	1	34	11	1.46
4159440--4159495	18	3.3	17	75	14	62	51	0	35	12	1.40
4163486--4163513	2	14.0	2	100	0	56	50	0	0	50	1.00
4173836--4174100	44	6.0	44	85	5	329	28	11	13	45	1.79
4173836--4174065	87	2.6	86	87	7	320	29	11	13	45	1.79
4173836--4174100	90	3.0	87	83	7	329	28	11	13	45	1.79
4173836--4174079	134	1.8	131	88	4	364	29	11	13	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4174626--4174654	12	2.3	13	94	5	51	44	13	20	20	1.85
4175864--4175909	2	23.0	2	100	0	92	50	0	0	50	1.00
4200138--4200184	20	2.3	21	85	3	60	40	6	10	42	1.65
4203066--4203103	20	1.9	20	94	0	67	26	5	21	47	1.71
4219210--4219249	17	2.4	17	91	0	62	72	0	2	25	0.97
4219210--4219246	16	2.2	17	90	4	58	72	0	2	24	0.97
4224761--4224804	2	22.0	2	100	0	88	50	0	0	50	1.00
4235466--4235505	15	2.7	15	84	0	53	42	0	17	40	1.49
4236248--4236277	2	15.0	2	92	0	51	46	0	3	50	1.18
4264879--4264955	39	2.0	39	100	0	154	23	23	19	33	1.97
4266325--4266400	22	3.3	22	75	20	75	32	1	0	65	1.01
4266368--4266423	13	4.1	14	78	15	64	32	0	0	67	0.91
4266352--4266507	27	5.7	27	73	13	104	32	1	1	64	1.13
4266384--4266514	48	2.7	48	75	9	133	32	2	1	64	1.15
4266482--4266513	15	2.1	15	100	0	64	34	0	0	65	0.93
4272322--4272360	20	1.9	21	84	5	53	46	0	2	51	1.14
4272616--4272672	29	1.9	30	89	3	89	59	0	5	35	1.20
4273046--4273072	2	13.5	2	100	0	54	51	0	0	48	1.00
4273078--4273110	2	16.0	2	93	6	57	48	0	48	0	1.01
4273078--4273110	15	2.3	14	90	10	57	48	0	48	0	1.01
4273078--4273110	17	2.0	16	100	0	57	48	0	48	0	1.01
4280713--4280752	15	2.6	16	88	8	64	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4294778--4294844	11	5.5	11	74	19	62	59	0	0	40	0.97
4294780--4294854	25	3.0	25	98	2	141	58	0	0	41	0.98
4294841--4294972	27	5.0	27	69	15	69	53	5	0	40	1.23
4295111--4295168	22	2.9	20	82	12	66	51	0	0	48	1.00
4295131--4295198	15	4.3	15	71	20	57	48	1	1	48	1.19
4297241--4297360	24	5.1	24	68	13	97	25	13	19	42	1.87
4297206--4297401	69	2.8	69	85	0	248	27	15	17	39	1.90
4298356--4298386	4	7.8	4	100	0	62	0	0	22	77	0.77
4303488--4303533	19	2.5	19	85	3	58	69	0	2	28	1.00
4303468--4303561	27	3.6	25	77	11	82	67	0	2	30	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106