genome.fa.s2.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  75  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28550406--28550505	42	2.4	41	85	6	130	52	2	4	42	1.31
28550475--28550531	27	2.2	26	84	6	71	54	1	1	42	1.21
28550365--28550534	22	7.2	22	64	22	69	55	1	2	40	1.23
28550192--28550787	143	4.1	142	83	7	654	52	2	2	42	1.27
28550675--28550721	20	2.4	21	82	10	55	57	2	0	40	1.11
28550692--28550729	17	2.1	19	85	9	53	55	0	0	44	0.99
28554342--28554382	12	3.7	11	81	18	50	68	2	0	29	1.03
28556824--28556869	14	3.4	14	82	11	60	54	30	4	10	1.55
28558273--28558403	34	3.9	33	74	9	97	34	25	12	27	1.93
28558292--28558403	34	3.3	34	73	13	106	36	24	13	25	1.92
28565564--28565595	2	16.0	2	100	0	64	50	0	0	50	1.00
28578888--28578982	42	2.3	42	88	0	145	22	30	24	23	1.99
28584517--28584601	18	4.7	18	70	11	66	15	10	25	48	1.77
28589491--28589534	20	2.2	20	87	0	61	45	22	2	29	1.65
28590025--28590050	11	2.4	11	100	0	52	76	0	7	15	0.99
28594048--28594296	35	7.2	35	81	5	265	43	12	8	36	1.71
28594049--28594296	106	2.4	104	79	5	295	43	12	8	36	1.71
28594037--28594303	141	1.9	138	87	5	394	43	11	7	37	1.71
28601322--28601389	29	2.3	29	87	5	91	47	19	8	25	1.78
28605976--28606032	25	2.3	25	78	0	60	29	26	14	29	1.95
28608042--28608081	19	2.1	19	90	9	64	17	22	30	30	1.97
28608537--28608570	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28608602--28608734	42	3.1	41	86	5	167	25	33	15	25	1.95
28614126--28614167	2	21.0	2	100	0	84	50	0	0	50	1.00
28626228--28626333	38	2.7	38	80	8	115	23	37	16	21	1.93
28633489--28633630	40	3.7	38	83	4	142	21	38	17	23	1.93
28633561--28633631	19	3.6	19	66	14	54	22	39	15	22	1.92
28633561--28633644	40	2.1	40	95	0	150	22	38	16	22	1.93
28638874--28638907	7	4.7	7	85	7	50	8	0	2	88	0.62
28638874--28638907	15	2.3	15	90	10	52	8	0	2	88	0.62
28639527--28639572	22	2.0	23	83	4	58	32	2	10	54	1.47
28642427--28642472	22	2.1	22	95	0	83	30	8	26	34	1.86
28642941--28643059	42	2.8	42	85	0	139	22	32	17	26	1.96
28644827--28644955	36	3.6	36	89	1	179	20	13	37	27	1.91
28644983--28645027	2	22.5	2	100	0	90	48	0	0	51	1.00
28657795--28657848	28	2.0	27	85	3	72	29	20	18	31	1.96
28657497--28658476	489	2.0	487	95	1	1768	29	18	15	36	1.92
28660520--28660683	59	2.8	56	80	8	175	39	12	9	39	1.76
28660520--28660683	29	5.6	28	80	7	157	39	12	9	39	1.76
28669228--28669346	43	2.8	43	84	2	132	21	35	19	24	1.96
28677050--28677162	43	2.6	43	83	5	122	21	36	18	23	1.95
28684553--28684681	42	3.1	42	84	2	134	24	19	32	23	1.97
28684743--28684774	2	16.0	2	93	0	55	50	3	0	46	1.17
28691028--28691122	42	2.3	42	90	0	154	24	23	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28691048--28691144	42	2.3	42	83	3	115	25	22	31	19	1.98
28691242--28691346	37	2.8	37	84	8	124	23	18	37	20	1.94
28691242--28691343	40	2.7	37	87	4	132	23	18	37	20	1.94
28709709--28709762	23	2.5	22	83	13	62	55	0	12	31	1.38
28710661--28710717	28	2.1	28	83	3	80	35	19	17	28	1.94
28729989--28730093	54	1.9	54	96	0	192	25	40	14	19	1.89
28735309--28735348	19	2.0	20	85	4	55	50	2	15	32	1.57
28749836--28749966	42	3.1	42	88	0	145	23	18	34	23	1.96
28749851--28749967	42	2.8	42	90	0	171	23	18	35	22	1.95
28750008--28750057	2	25.0	2	91	0	82	48	2	0	50	1.12
28751517--28751644	42	3.0	41	85	10	177	26	17	32	24	1.97
28753263--28753292	12	2.4	13	94	5	53	40	20	0	40	1.52
28753533--28753579	21	2.2	21	92	0	76	27	14	21	36	1.93
28760758--28760782	13	1.9	13	100	0	50	24	16	20	40	1.91
28785204--28785257	23	2.3	23	93	0	90	29	40	5	24	1.77
28785252--28785383	43	3.1	43	77	6	124	23	37	16	22	1.94
28787601--28787809	54	3.9	54	88	2	303	28	42	10	18	1.84
28787704--28787789	25	3.3	25	64	12	64	26	44	9	19	1.81
28787601--28787805	108	1.9	108	91	0	338	28	41	10	19	1.84
28791974--28792149	42	4.2	42	87	3	230	38	21	17	22	1.93
28795484--28795521	20	1.9	20	94	0	67	28	5	18	47	1.70
28799734--28799775	21	2.0	21	90	0	66	23	28	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28800170--28800275	38	2.7	39	84	5	135	23	40	15	20	1.90
28806612--28806657	22	2.0	24	91	8	78	63	0	8	28	1.24
28809000--28809043	11	4.3	11	81	18	51	0	22	9	68	1.18
28814855--28814898	11	4.3	11	81	18	51	0	22	9	68	1.18
28816224--28816274	23	2.2	23	100	0	102	23	21	21	33	1.97
28836710--28836759	24	2.1	24	100	0	100	36	8	14	42	1.74
28839489--28839543	28	2.0	29	89	7	87	27	21	25	25	2.00
28844230--28844297	4	17.2	4	73	14	61	0	32	1	66	1.01
28845756--28845792	2	18.5	2	100	0	74	48	0	0	51	1.00
28845634--28845953	161	2.0	160	99	0	631	31	5	16	46	1.68
28845917--28845953	2	18.5	2	100	0	74	48	0	0	51	1.00
28851439--28851610	69	2.5	68	88	5	256	43	9	11	35	1.73
28854935--28855066	43	3.1	43	85	2	176	23	34	15	26	1.95
28861823--28861904	43	1.9	43	94	0	146	21	29	17	31	1.96
28864459--28864555	38	2.6	38	93	0	167	21	41	16	20	1.90
28864488--28864551	19	3.4	19	69	16	60	21	39	15	23	1.92
28864672--28864719	2	24.5	2	95	4	89	52	0	0	47	1.00
28876538--28876574	17	2.2	17	95	0	65	29	16	35	18	1.93
28885451--28885488	19	2.0	19	100	0	76	42	31	0	26	1.56
28887356--28887493	55	2.5	55	86	0	186	28	34	15	21	1.94
28888123--28888152	11	2.7	11	89	0	51	56	0	0	43	0.99
28889838--28889942	54	1.9	54	92	0	174	20	14	39	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28894137--28894183	20	2.4	19	85	7	58	70	2	23	4	1.16
28894151--28894177	14	1.9	14	100	0	54	74	3	22	0	0.98
28901296--28901334	20	2.0	20	89	0	60	76	2	17	2	1.01
28909684--28909849	43	3.9	43	83	4	187	19	33	20	26	1.97
28909682--28909849	86	2.0	86	83	7	216	19	33	20	26	1.97
28915039--28915080	19	2.2	19	83	8	50	59	0	19	21	1.38
28924586--28924668	42	2.0	42	90	0	130	28	21	30	19	1.98
28925264--28925300	19	1.9	19	94	0	65	29	21	18	29	1.97
28929151--28929208	20	3.0	20	80	9	57	25	3	10	60	1.45
28930276--28930484	55	3.8	55	85	2	276	24	14	33	26	1.94
28930286--28930492	110	1.9	111	90	1	335	24	14	35	25	1.94
28932437--28932575	70	2.0	69	98	0	260	30	23	12	33	1.91
28933864--28933921	29	1.9	31	83	13	77	34	10	22	32	1.88
28935586--28935647	31	1.9	31	87	9	88	16	22	3	58	1.52
28946314--28946342	2	15.0	2	92	7	51	0	0	51	48	1.00
28949847--28949887	21	1.9	21	85	5	55	12	34	2	51	1.52
28952695--28952729	2	17.5	2	87	0	52	51	42	0	5	1.25
28953387--28953556	72	2.4	70	79	8	193	25	15	21	37	1.93
28955853--28955898	11	4.3	11	83	5	58	73	4	21	0	1.00
28955853--28955898	21	2.1	22	92	4	76	73	4	21	0	1.00
28955909--28955952	22	2.0	23	90	4	72	52	6	25	15	1.68
28955910--28955958	22	2.2	22	85	3	62	57	8	20	14	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28960143--28960222	38	2.1	39	81	6	92	30	5	8	56	1.51
28965891--28965923	1	33.0	1	93	0	57	0	3	0	96	0.20
28967479--28967515	3	12.7	3	94	5	67	64	0	0	35	0.94
28967725--28967798	28	2.7	27	82	4	85	35	5	1	58	1.30
28968027--28968102	30	2.6	29	84	12	102	57	0	0	42	0.98
28968042--28968085	21	2.1	21	83	8	54	63	0	0	36	0.95
28977194--28977229	18	2.1	18	90	10	58	44	22	2	30	1.67
28982583--28982619	3	12.3	3	94	0	65	64	0	2	32	1.07
28991157--28991193	11	3.0	13	76	15	51	43	24	8	24	1.81
28995707--28995889	71	2.6	70	78	3	170	44	9	15	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106