genome.fa.s2.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  24  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9870852--9870885	17	2.0	17	88	0	50	52	11	2	32	1.53
9879390--9879424	8	4.4	8	85	0	52	14	8	37	40	1.76
9881516--9881955	218	2.0	219	89	1	668	41	17	19	22	1.91
9882610--9882729	60	2.0	60	86	0	168	38	19	18	24	1.93
9888960--9889000	21	1.9	22	90	5	66	21	7	29	41	1.80
9889014--9889045	15	2.1	15	94	0	55	40	12	21	25	1.88
9889679--9889723	22	2.0	23	86	4	65	66	8	8	15	1.43
9895123--9895167	22	2.0	23	86	4	65	66	8	8	15	1.43
9895683--9895726	23	2.0	22	81	4	52	40	0	6	52	1.28
9897246--9897294	22	2.2	23	85	3	64	65	4	0	30	1.11
9900427--9900494	33	2.0	34	97	2	129	42	20	13	23	1.87
9909289--9909430	71	2.0	71	87	0	203	44	16	20	19	1.87
9910504--9910606	50	2.0	51	92	1	172	32	19	19	29	1.96
9918194--9918218	12	2.1	12	100	0	50	52	0	24	24	1.48
9922210--9922484	87	3.2	87	93	0	451	38	13	10	37	1.79
9922574--9922616	2	22.0	2	95	4	79	51	0	0	48	1.00
9926150--9926227	27	2.8	28	82	3	104	41	15	7	35	1.76
9926214--9926239	12	2.2	12	100	0	52	34	15	0	50	1.45
9926229--9926497	27	9.9	28	76	6	239	41	17	8	32	1.80
9926229--9926497	55	4.9	55	76	8	228	41	17	8	32	1.80
9926247--9926486	107	2.2	109	80	8	256	41	17	8	32	1.80
9927793--9927846	26	2.0	27	82	10	67	42	31	1	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9943949--9943990	21	2.0	22	86	13	61	23	4	21	50	1.68
9945283--9945643	181	2.0	181	94	1	634	37	11	24	25	1.90
9950032--9950278	127	2.0	126	85	5	338	46	9	10	33	1.72
9955715--9955742	14	2.0	14	100	0	56	21	0	7	71	1.09
9973336--9973485	53	2.7	54	83	5	185	41	18	14	26	1.88
9973647--9973698	26	2.0	26	92	7	88	50	11	7	30	1.67
9973720--9973784	18	3.6	18	76	0	67	44	20	16	18	1.87
9976761--9976919	79	2.0	79	97	2	302	36	7	18	36	1.80
9984598--9984637	16	2.4	18	80	20	59	40	0	0	60	0.97
9984601--9984663	30	2.2	29	83	11	76	44	0	0	55	0.99
9984641--9984683	21	2.0	22	82	13	54	51	2	2	44	1.27
9994893--9995234	170	2.0	170	87	4	499	28	8	12	50	1.69
10001351--10001438	2	43.5	2	95	2	158	48	0	1	48	1.08
10001559--10001670	36	3.1	36	75	5	118	31	33	10	24	1.89
10002694--10002743	13	3.6	14	76	15	50	76	0	22	2	0.89
10019994--10020037	18	2.4	19	77	11	56	31	27	6	34	1.83
10023061--10023099	14	2.7	14	84	15	53	43	0	0	56	0.99
10026153--10026204	27	1.9	25	85	14	68	40	7	13	38	1.73
10026207--10026304	28	3.6	27	75	6	92	46	8	6	38	1.58
10026233--10026378	74	2.0	72	81	2	166	43	5	8	43	1.57
10026306--10026369	28	2.3	28	84	10	94	40	1	9	48	1.45
10031614--10031788	90	1.9	90	83	4	228	28	12	14	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10032145--10032245	26	3.9	26	75	2	114	37	12	18	30	1.89
10036187--10036230	11	3.9	12	82	11	58	25	0	0	75	0.81
10036187--10036228	14	3.1	14	83	10	52	23	0	0	76	0.79
10036217--10036262	24	2.0	22	83	12	56	19	10	0	69	1.17
10036201--10036263	25	2.5	23	75	14	54	20	7	0	71	1.11
10037506--10037601	17	5.2	17	68	22	68	13	45	21	18	1.84
10037487--10037746	38	7.1	38	74	12	184	16	43	20	20	1.88
10037679--10037742	21	3.2	21	73	24	75	12	42	25	20	1.87
10037688--10037746	17	3.2	17	75	25	66	11	45	22	20	1.83
10037487--10037786	144	2.1	144	83	6	376	17	42	21	19	1.90
10039860--10039894	3	11.3	3	87	6	52	34	0	2	62	1.10
10055915--10055944	15	2.0	15	93	0	51	36	6	10	46	1.64
10059798--10059875	24	3.2	24	68	10	59	11	7	11	69	1.37
10059864--10059894	16	2.0	16	93	6	55	29	0	6	64	1.18
10061761--10061944	102	1.8	102	90	0	296	26	14	14	45	1.83
10063910--10063943	11	3.1	11	84	16	52	29	14	20	35	1.93
10064150--10064205	26	2.2	26	83	6	69	41	8	10	39	1.71
10064527--10064573	19	2.5	20	82	6	53	48	0	0	51	1.00
10067892--10067953	30	2.1	28	82	11	72	41	11	11	35	1.77
10068137--10068170	16	2.2	16	89	5	52	29	11	8	50	1.69
10068614--10068644	2	15.0	2	93	6	53	48	0	3	48	1.17
10086446--10086520	12	6.2	12	82	3	62	10	0	76	13	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10086461--10086519	6	9.8	6	88	0	55	6	0	77	15	0.96
10087089--10087131	18	2.4	18	88	0	59	16	9	34	39	1.80
10090685--10090721	19	1.9	19	94	0	65	10	8	0	81	0.89
10091141--10091225	22	3.8	22	74	10	75	54	0	2	43	1.13
10091138--10091230	44	2.1	44	82	7	118	50	0	2	47	1.13
10095169--10095297	67	1.9	67	83	0	168	43	11	4	40	1.62
10099436--10099462	7	3.9	7	100	0	54	40	14	44	0	1.46
10099473--10099540	34	2.0	34	94	0	118	35	10	13	41	1.78
10107202--10107246	2	22.5	2	100	0	90	48	0	51	0	1.00
10107255--10108248	502	2.0	501	99	0	1979	34	21	21	22	1.97
10108789--10108825	16	2.5	14	84	16	56	21	5	18	54	1.64
10108794--10108830	16	2.2	17	95	4	67	27	8	18	45	1.77
10108830--10108878	25	2.0	25	83	0	62	34	18	8	38	1.80
10108837--10108888	25	2.1	25	85	0	68	26	19	13	40	1.88
10108873--10108921	25	2.0	25	83	0	62	24	26	16	32	1.96
10109243--10109448	81	2.5	81	92	0	322	39	8	12	38	1.74
10109799--10109995	33	6.3	33	81	9	225	43	8	15	31	1.77
10109802--10109978	61	2.9	61	83	8	193	44	8	15	31	1.76
10109811--10109992	94	1.9	94	92	0	301	44	9	13	32	1.76
10110348--10110411	31	2.0	33	93	6	114	53	17	9	20	1.71
10110696--10110820	36	3.5	36	85	1	171	24	13	20	42	1.87
10122197--10122316	32	3.6	32	76	13	109	33	25	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10122695--10122734	20	2.0	20	90	0	62	35	10	12	42	1.76
10122918--10122962	22	2.1	22	87	4	65	44	8	6	40	1.62
10122996--10123079	21	3.9	22	79	4	91	52	13	4	29	1.60
10122996--10123101	43	2.5	43	82	1	115	50	13	6	30	1.67
10124445--10124704	129	2.0	130	95	2	470	38	7	16	37	1.77
10128461--10128495	2	17.5	2	93	0	61	48	0	2	48	1.16
10128447--10128497	12	4.4	11	80	11	57	45	1	1	50	1.24
10129397--10129486	44	2.0	44	97	0	171	28	12	15	43	1.83
10129534--10129592	25	2.4	25	97	0	109	47	20	8	23	1.77
10130724--10130769	16	2.6	18	77	22	53	36	0	21	41	1.54
10131399--10131523	25	5.0	26	75	6	107	37	14	17	30	1.90
10133477--10133871	191	2.1	192	90	1	614	29	23	16	30	1.96
10134123--10134159	17	2.2	16	90	4	56	21	0	0	78	0.75
10134426--10134479	14	4.0	14	73	7	58	22	3	1	72	1.10
10134425--10134483	24	2.5	24	81	13	70	23	3	3	69	1.19
10141932--10141986	18	2.9	19	78	13	60	36	0	0	63	0.95
10141950--10141997	17	2.8	18	78	9	55	37	0	0	62	0.95
10146393--10146500	55	1.9	56	90	1	173	54	0	5	39	1.24
10146418--10146521	30	3.6	30	69	18	87	56	0	2	40	1.14
10146453--10146513	21	2.8	21	70	7	50	57	0	4	37	1.20
10147197--10147265	2	35.5	2	83	11	90	44	0	0	53	1.00
10148449--10148489	20	2.0	21	85	4	57	58	0	19	21	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10152844--10152903	30	2.1	30	84	6	79	41	21	5	31	1.75
10158257--10158300	24	1.9	24	86	9	65	13	2	18	65	1.36
10158610--10158635	3	8.7	3	100	0	52	30	0	0	69	0.89
10158764--10158948	1	185.0	1	70	0	73	4	2	10	82	0.92
10158765--10158937	37	4.8	36	74	17	112	4	2	10	82	0.93
10158765--10158948	35	5.3	32	74	18	138	4	2	10	82	0.92
10158766--10158945	51	3.5	48	74	15	157	4	2	11	81	0.93
10158766--10158945	50	3.6	46	73	17	146	4	2	11	81	0.93
10158820--10158937	24	4.9	23	79	14	132	3	3	10	83	0.89
10158818--10158955	11	12.2	11	74	15	95	2	2	11	82	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106