genome.fa.s2.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  70  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26668965--26669153	67	2.8	67	83	3	202	25	14	25	34	1.94
26669003--26669126	32	3.8	32	73	10	106	26	15	26	31	1.96
26670650--26670706	20	2.8	20	76	12	55	21	7	1	70	1.20
26671942--26672073	39	3.5	37	72	14	110	27	34	15	22	1.95
26671981--26672101	34	3.4	34	72	14	100	27	37	14	21	1.92
26671939--26672108	73	2.3	73	90	0	268	27	35	14	22	1.93
26673763--26673840	37	2.1	37	90	4	122	25	37	8	28	1.86
26675693--26675730	19	2.0	19	90	10	60	71	0	21	7	1.11
26676782--26676827	20	2.2	21	84	7	58	34	2	4	58	1.30
26690838--26691017	73	2.5	73	77	3	175	23	18	17	40	1.91
26692395--26692419	13	1.9	13	100	0	50	32	12	16	40	1.84
26714702--26714895	29	6.7	29	78	9	216	38	11	12	37	1.81
26720475--26720504	13	2.3	13	94	0	51	53	0	3	43	1.17
26725567--26725608	23	1.9	21	85	9	57	7	21	11	59	1.56
26728362--26728892	181	2.9	180	85	5	714	32	14	12	40	1.83
26729962--26730134	35	4.9	35	81	4	190	43	15	6	34	1.73
26729987--26730134	71	2.1	68	91	3	233	44	14	6	34	1.70
26730416--26730444	15	1.9	15	100	0	58	24	27	13	34	1.93
26736291--26736411	53	2.4	50	79	8	143	38	19	22	19	1.93
26737999--26738035	12	3.1	12	100	0	74	16	16	16	51	1.77
26738921--26738977	29	2.0	29	85	0	78	19	12	17	50	1.77
26740700--26740740	21	1.9	22	90	5	66	14	21	29	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26754855--26754899	24	2.0	22	82	8	54	75	8	4	11	1.17
26763506--26763544	20	2.0	20	84	0	51	56	12	0	30	1.37
26765981--26766021	21	2.0	21	85	4	57	41	4	24	29	1.75
26766898--26766932	2	17.5	2	93	0	61	45	0	2	51	1.16
26766820--26767046	114	2.0	113	98	1	429	37	4	15	42	1.68
26767012--26767046	2	17.5	2	93	0	61	45	0	2	51	1.16
26771278--26771365	42	2.1	42	89	6	133	20	30	21	27	1.98
26773065--26773101	19	1.9	19	94	0	65	13	27	29	29	1.94
26773524--26773610	37	2.2	40	82	15	128	27	32	10	29	1.90
26775689--26775811	42	2.9	42	95	0	219	21	21	34	22	1.97
26776046--26776107	26	2.4	26	91	0	97	25	3	38	32	1.72
26777680--26777728	24	2.1	23	84	3	62	22	22	2	53	1.57
26780816--26780853	16	2.2	18	86	9	53	55	5	31	7	1.51
26781485--26781653	31	5.5	31	70	12	98	34	14	18	31	1.91
26787562--26787680	42	2.8	43	89	1	177	22	31	21	24	1.99
26794578--26794694	42	2.8	42	84	2	146	21	32	23	22	1.98
26795523--26795561	19	2.1	19	85	4	53	41	10	35	12	1.77
26802777--26803256	42	11.4	41	82	2	384	24	30	20	24	1.98
26802777--26803256	84	5.7	84	83	1	541	24	30	20	24	1.98
26802783--26803257	126	3.8	126	83	2	560	24	30	20	24	1.99
26822912--26822952	21	2.0	21	85	0	55	24	2	7	65	1.30
26826957--26827189	35	6.7	35	80	2	229	37	6	13	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26826977--26827189	106	2.0	105	88	0	318	37	7	13	41	1.73
26826954--26827169	71	3.1	70	82	5	251	36	6	12	43	1.69
26838146--26838212	30	2.3	30	84	5	84	41	19	10	28	1.84
26842469--26842717	35	7.1	35	83	3	279	36	6	12	44	1.67
26842469--26842718	71	3.6	70	84	6	312	37	6	12	44	1.67
26842466--26842736	142	1.9	139	87	5	393	37	6	12	43	1.67
26842469--26842717	107	2.4	106	83	3	317	36	6	12	44	1.67
26845548--26845705	68	2.3	68	89	2	237	31	17	12	38	1.87
26847575--26847779	54	3.8	54	85	3	279	24	40	11	22	1.87
26847590--26847785	108	1.8	108	90	0	320	25	39	12	22	1.90
26854863--26855058	54	3.6	54	84	2	250	22	42	13	20	1.88
26857020--26857125	36	3.0	36	80	6	126	29	16	21	33	1.95
26858350--26858403	19	2.7	19	76	15	56	35	3	38	22	1.72
26860470--26860533	33	1.9	33	84	6	85	62	1	1	34	1.14
26861803--26861848	2	23.5	2	86	4	67	52	0	0	47	1.00
26862946--26862982	2	18.5	2	100	0	74	48	0	0	51	1.00
26864352--26864409	25	2.3	25	96	0	107	37	13	18	29	1.90
26867073--26867104	16	2.0	16	93	0	55	12	3	18	65	1.38
26868489--26868527	18	2.2	18	95	0	69	23	10	20	46	1.81
26870153--26870197	21	2.1	21	87	4	63	28	15	15	40	1.88
26871856--26871891	2	18.0	2	100	0	72	50	0	0	50	1.00
26873427--26873552	42	3.0	42	86	0	171	23	22	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26877366--26877411	21	2.2	20	84	7	56	15	21	6	56	1.61
26877371--26877411	21	1.9	22	90	5	66	17	24	7	51	1.70
26891145--26891190	21	2.2	21	84	0	56	32	21	23	21	1.98
26895609--26895633	13	1.9	13	100	0	50	48	8	0	44	1.32
26904047--26904242	54	3.6	54	95	0	347	19	10	42	27	1.83
26911952--26911999	23	2.3	19	79	13	51	52	0	0	47	1.00
26911972--26912002	16	1.9	16	93	0	53	48	0	0	51	1.00
26913574--26913753	60	3.0	59	84	3	243	22	33	18	25	1.96
26914746--26914779	16	2.1	16	94	0	59	0	20	0	79	0.73
26915286--26915341	28	2.0	28	86	6	78	28	17	19	33	1.95
26926009--26926221	43	5.0	43	88	0	327	25	17	32	24	1.97
26928092--26928124	2	16.5	2	93	0	57	48	0	3	48	1.17
26928152--26928274	43	2.9	43	79	7	133	21	34	17	27	1.95
26934123--26934164	19	2.2	19	86	0	57	61	0	0	38	0.96
26934564--26934615	20	2.6	20	78	0	59	21	42	9	26	1.83
26935796--26935956	43	3.7	43	91	0	250	21	16	36	25	1.94
26937482--26937511	14	2.2	13	94	5	51	63	3	0	33	1.11
26941208--26941267	28	2.1	28	81	0	66	33	20	18	28	1.96
26954669--26954761	39	2.3	40	88	1	134	23	19	25	31	1.98
26956948--26957047	38	2.6	38	87	0	137	29	13	21	37	1.90
26960199--26960441	80	3.0	79	89	2	360	37	27	6	28	1.82
26963608--26963762	37	4.1	37	78	5	141	26	9	27	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26963608--26963736	37	3.5	36	81	5	150	24	10	27	36	1.89
26963638--26963762	38	3.3	38	80	5	103	26	9	27	36	1.87
26964186--26964224	2	19.5	2	94	0	69	48	0	2	48	1.15
26965241--26965532	152	1.9	151	98	0	557	28	19	4	46	1.69
26967088--26967273	42	4.4	42	88	0	282	24	31	20	23	1.98
26967072--26967280	84	2.5	84	88	1	294	24	30	21	23	1.99
26971797--26972047	42	6.0	42	85	0	322	23	30	22	23	1.99
26971815--26972041	126	1.8	126	92	0	382	23	30	22	23	1.99
26974788--26974826	15	2.6	15	83	0	51	30	12	7	48	1.69
26976005--26976033	3	9.7	3	100	0	58	34	0	0	65	0.93
26982996--26983056	16	3.9	16	77	14	56	49	1	1	47	1.21
26985615--26985987	188	2.0	187	94	0	647	29	13	25	31	1.93
26986649--26986700	27	1.9	27	84	0	68	13	26	28	30	1.94
26987461--26987571	54	2.1	54	96	0	204	22	20	20	36	1.96
26997224--26997337	2	57.0	2	88	3	167	48	1	1	47	1.22
26997374--26997483	42	2.6	42	83	1	121	23	29	18	29	1.98
26999590--26999696	53	2.0	53	100	0	214	31	14	16	36	1.90
27002672--27002713	15	2.7	16	88	7	59	73	4	7	14	1.21
27029968--27030181	35	6.1	35	87	2	281	35	7	14	43	1.72
27029968--27030181	71	3.1	68	84	8	279	35	7	14	43	1.72
27038159--27038200	21	2.1	20	86	8	59	59	9	0	30	1.29
27064771--27064901	42	3.1	42	82	2	156	22	20	33	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27064834--27064924	42	2.2	42	83	0	119	24	21	32	20	1.98
27064771--27064924	84	1.8	84	81	2	193	22	20	33	22	1.97
27064965--27065008	2	22.0	2	95	0	79	50	2	0	47	1.13
27073463--27073500	19	2.0	20	94	5	69	42	15	21	21	1.89
27082893--27083177	142	2.0	141	98	1	561	38	23	4	32	1.76
27090090--27090132	21	2.0	21	90	0	68	44	25	9	20	1.81
27094785--27094866	37	2.2	37	91	0	128	30	10	34	24	1.90
27094785--27094910	37	3.4	38	83	7	120	31	9	33	25	1.88
27095807--27095869	26	2.6	24	88	11	101	30	42	3	23	1.70
27095879--27095988	43	2.6	43	88	2	150	20	36	18	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106