genome.fa.s2.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  25  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10159030--10159130	21	4.8	21	75	7	87	33	13	25	26	1.94
10159096--10159484	143	2.7	142	85	3	510	35	15	21	26	1.94
10160643--10160798	78	2.0	80	83	7	203	13	25	8	52	1.69
10162383--10162421	19	2.0	20	85	9	55	10	2	10	76	1.10
10167873--10167994	60	2.1	59	93	4	212	23	9	4	61	1.44
10169813--10169841	3	9.7	3	100	0	58	31	0	0	68	0.89
10170772--10170815	20	2.1	21	95	4	81	56	0	25	18	1.41
10172828--10172900	36	2.0	36	86	0	101	31	10	24	32	1.90
10177673--10177712	21	1.9	21	89	0	62	50	2	5	42	1.37
10177701--10177725	2	12.5	2	100	0	50	52	0	0	48	1.00
10182012--10182130	37	3.2	37	91	4	204	24	36	10	28	1.88
10185301--10185478	42	4.2	42	87	0	248	23	20	31	25	1.98
10185498--10185555	26	2.2	26	90	0	89	24	5	37	32	1.77
10189041--10189122	2	43.0	2	80	9	100	47	3	0	48	1.19
10208964--10209012	22	2.2	22	85	0	62	24	26	24	24	2.00
10210929--10210956	13	2.2	13	100	0	56	28	17	14	39	1.89
10213309--10213351	16	2.7	16	82	10	52	62	11	4	20	1.46
10221316--10221388	37	2.0	37	81	5	85	47	12	17	21	1.80
10231538--10231588	24	2.1	24	96	0	93	33	11	7	47	1.69
10233769--10233822	14	3.9	13	74	11	54	77	1	3	16	1.00
10246540--10246580	16	2.6	17	81	14	52	7	24	12	56	1.61
10246507--10246623	59	2.0	59	93	0	198	12	23	14	49	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10246573--10246691	43	2.8	43	89	2	177	15	21	15	47	1.82
10253371--10253412	22	2.0	21	85	4	57	9	14	35	40	1.78
10258862--10258906	23	2.0	22	83	12	56	42	6	2	48	1.41
10264233--10264418	55	3.4	54	77	5	203	13	13	32	40	1.83
10264447--10264507	23	2.7	23	78	0	77	24	21	29	24	1.99
10264488--10264569	31	2.6	31	86	3	103	25	18	23	32	1.97
10268053--10268445	31	12.7	31	81	1	410	38	21	16	23	1.93
10268053--10268445	62	6.3	62	84	1	491	38	21	16	23	1.93
10268053--10268443	124	3.2	124	88	1	543	38	21	16	23	1.93
10269548--10269621	16	4.8	15	78	20	64	48	8	10	32	1.67
10271080--10271378	31	9.6	31	76	5	282	40	21	19	19	1.92
10271109--10271378	93	2.9	92	86	2	335	40	21	18	18	1.91
10271743--10272190	156	2.9	156	88	0	646	26	20	19	33	1.96
10271743--10272268	156	3.4	155	84	1	640	28	19	18	33	1.96
10273858--10274092	31	7.6	31	85	2	267	36	20	16	25	1.94
10274561--10274679	53	2.3	52	86	1	157	27	29	18	24	1.98
10274667--10275040	47	8.0	47	80	0	390	21	34	17	26	1.96
10274677--10275017	187	1.8	188	89	1	533	22	34	16	26	1.95
10274666--10275062	94	4.2	94	83	1	474	22	33	16	26	1.96
10284104--10284139	2	18.0	2	94	0	63	50	2	0	47	1.15
10288643--10288684	8	5.0	8	85	8	57	4	14	0	80	0.86
10296110--10296178	36	1.9	36	84	0	93	28	8	21	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10298243--10298295	25	2.2	24	83	10	63	37	1	0	60	1.08
10303786--10303814	14	2.1	14	100	0	58	34	51	6	6	1.55
10311374--10311405	6	5.5	6	96	3	57	68	0	0	31	0.90
10314389--10314434	20	2.3	19	82	10	56	21	8	2	67	1.29
10314881--10314945	24	2.6	24	80	9	60	29	3	1	66	1.16
10318554--10318896	172	2.0	171	96	0	623	32	11	11	44	1.77
10321845--10321900	22	2.5	24	74	14	64	26	0	0	73	0.84
10321856--10321942	7	12.1	7	68	12	52	26	1	5	66	1.21
10321871--10321910	13	2.9	13	85	7	53	30	0	0	70	0.88
10321862--10321908	21	2.2	22	85	11	62	29	0	0	70	0.88
10323704--10323753	7	7.6	7	77	18	54	54	0	0	46	1.00
10323704--10323799	13	7.5	13	65	22	51	48	1	1	48	1.15
10323746--10323792	25	1.9	24	86	4	67	44	2	2	51	1.25
10323774--10323816	15	2.9	15	89	0	59	39	0	0	60	0.97
10323789--10323854	20	3.2	20	68	10	51	39	0	1	59	1.07
10323872--10323955	24	3.3	24	78	18	89	47	0	1	51	1.08
10325822--10325849	4	7.0	4	100	0	56	50	0	25	25	1.50
10330034--10330089	27	2.1	27	86	6	78	30	17	19	32	1.95
10330065--10330132	33	2.1	33	91	0	109	33	20	13	32	1.91
10339331--10339367	11	3.2	12	85	14	60	40	10	0	48	1.38
10341062--10341094	2	16.5	2	93	0	57	45	0	3	51	1.16
10345213--10345237	12	2.1	12	100	0	50	44	24	8	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10364879--10365141	110	2.4	110	90	2	420	44	30	11	12	1.79
10364879--10365143	55	4.8	55	85	4	347	44	30	11	12	1.78
10365646--10366412	104	7.5	102	75	8	623	22	33	14	29	1.94
10365792--10365868	23	3.4	23	78	1	66	23	31	15	29	1.95
10365627--10366437	208	4.0	206	84	4	980	22	33	14	28	1.94
10366105--10366249	23	6.3	23	74	1	92	21	35	14	28	1.93
10366105--10366296	93	2.1	93	81	7	221	21	34	15	28	1.94
10365627--10366400	197	3.8	199	84	6	889	22	33	14	29	1.94
10366362--10366537	81	2.2	81	86	2	246	25	36	13	25	1.92
10366487--10366549	23	2.7	22	88	9	90	28	39	6	25	1.80
10369685--10369714	2	15.0	2	100	0	60	50	0	50	0	1.00
10373027--10373083	16	3.4	16	73	20	53	3	42	5	49	1.42
10373114--10373141	2	14.0	2	100	0	56	0	50	0	50	1.00
10375220--10375270	2	25.5	2	91	0	84	49	1	0	49	1.12
10377659--10377718	31	1.9	31	89	0	93	46	15	10	28	1.77
10390821--10390859	21	1.9	21	89	5	62	51	0	0	48	1.00
10400309--10400342	16	2.1	16	89	10	52	14	11	2	70	1.27
10402248--10402367	63	1.9	63	84	0	159	21	27	11	39	1.88
10402601--10402751	23	6.6	23	78	4	144	29	11	22	36	1.90
10407321--10407390	35	2.0	36	85	2	97	45	20	15	18	1.85
10408702--10408747	21	2.2	21	92	0	74	50	0	23	26	1.50
10408915--10409008	21	4.5	21	73	5	64	24	15	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10408912--10409008	42	2.3	42	80	0	113	24	17	25	31	1.97
10408978--10409042	34	1.9	34	87	0	94	29	16	23	30	1.96
10409012--10409090	21	3.8	21	72	0	68	21	21	30	26	1.98
10411402--10411447	24	1.9	24	90	0	74	21	19	30	28	1.98
10412447--10412546	31	3.2	31	76	0	83	29	13	29	29	1.94
10413985--10414177	81	2.4	81	85	3	237	22	26	18	31	1.97
10414054--10414215	81	2.0	81	79	2	173	23	25	19	31	1.98
10415588--10415612	13	1.9	13	100	0	50	0	8	36	56	1.29
10417113--10417254	31	4.6	31	88	0	203	35	18	14	31	1.90
10417278--10417454	87	2.0	89	86	4	252	31	27	15	25	1.95
10417969--10418069	23	4.3	23	79	1	103	28	30	15	24	1.96
10418310--10418442	47	2.8	47	84	0	194	26	32	15	26	1.95
10418467--10418616	23	6.6	23	80	6	162	24	31	14	30	1.94
10418467--10418616	46	3.3	46	83	5	180	24	31	14	30	1.94
10418467--10418653	23	8.2	23	78	9	150	21	31	15	31	1.95
10418685--10418761	23	3.3	23	83	0	100	27	35	11	25	1.91
10422295--10422370	36	2.0	39	80	16	90	59	5	1	34	1.28
10422929--10422958	16	1.9	16	93	6	53	30	0	6	63	1.20
10438472--10438589	42	2.9	41	86	5	157	18	20	36	24	1.95
10438630--10438668	2	19.0	2	94	5	69	48	0	2	48	1.15
10440345--10440397	6	8.8	6	75	8	54	77	0	18	3	0.92
10441798--10441822	13	1.9	13	100	0	50	48	12	0	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10445642--10445679	20	1.9	20	88	0	58	42	13	10	34	1.78
10445746--10445791	22	2.1	22	91	0	74	41	4	10	43	1.59
10445795--10445852	18	3.0	18	68	18	53	29	5	17	46	1.69
10445785--10445874	21	4.4	21	75	13	89	28	6	14	48	1.69
10446138--10446187	21	2.4	21	83	6	57	50	10	8	32	1.65
10446181--10446226	22	2.1	22	91	0	74	43	10	4	41	1.59
10446260--10446343	21	3.9	22	78	7	93	51	11	4	32	1.60
10446257--10446357	21	4.8	21	73	9	80	49	12	4	32	1.62
10446138--10446403	140	1.9	139	81	8	326	45	13	7	33	1.72
10446456--10446517	21	3.0	21	82	0	79	48	16	9	25	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106