genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  97  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36851903--36851947	17	2.6	17	82	6	56	62	2	4	31	1.27
36855576--36855835	139	1.9	140	86	2	371	15	20	18	46	1.84
36855781--36855909	64	2.0	64	100	0	258	20	17	20	42	1.89
36873563--36873639	25	3.1	26	85	10	101	54	1	0	44	1.08
36873564--36873653	23	3.9	22	78	14	92	51	3	0	45	1.18
36873586--36873997	108	3.7	105	77	14	355	55	4	0	39	1.24
36873718--36873773	26	2.2	26	90	3	87	51	7	0	41	1.29
36873704--36873744	22	2.0	21	85	9	57	51	7	0	41	1.30
36873808--36874045	70	3.4	68	76	19	238	55	3	0	40	1.20
36873909--36874033	27	5.0	26	73	20	97	56	1	0	41	1.09
36873803--36874030	75	3.2	74	75	18	255	55	3	0	41	1.19
36874088--36874141	27	2.0	27	85	0	72	40	1	3	53	1.29
36884039--36884081	20	2.2	20	100	0	86	18	20	9	51	1.74
36888050--36888153	2	52.5	2	88	1	93	46	0	1	43	1.15
36888538--36888582	14	3.1	14	83	3	54	42	4	8	44	1.56
36889319--36889690	185	2.0	185	87	2	541	28	12	13	44	1.81
36889367--36889736	90	4.1	89	73	11	300	27	11	16	44	1.82
36889913--36890026	59	1.9	59	85	3	158	35	16	12	35	1.86
36890081--36890136	26	2.2	26	87	6	78	33	12	25	28	1.92
36891500--36891562	27	2.3	28	81	10	78	63	3	7	25	1.37
36898720--36898889	84	2.0	85	86	5	238	55	9	24	10	1.63
36903219--36903262	22	2.0	22	86	8	63	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36903245--36903320	31	2.5	31	85	8	93	60	1	2	35	1.19
36904420--36904595	87	2.0	87	95	0	316	26	22	19	32	1.97
36916107--36916148	3	14.0	3	100	0	84	33	0	33	33	1.58
36919199--36919228	15	1.9	16	93	6	53	66	10	10	13	1.44
36926621--36926708	43	2.0	43	93	0	149	25	28	12	34	1.92
36932568--36932733	89	1.9	89	89	0	260	31	10	20	36	1.87
36933166--36933245	40	2.0	40	85	4	110	38	20	21	20	1.93
36938580--36938618	19	2.1	19	100	0	78	38	5	25	30	1.78
36957428--36957462	14	2.4	15	85	4	54	51	2	0	45	1.16
36957402--36957452	20	2.4	21	93	6	86	50	1	0	47	1.12
36961457--36961547	23	4.0	23	75	11	87	21	14	26	37	1.92
36962146--36962231	25	3.4	25	80	0	91	26	11	23	38	1.89
36964147--36964186	17	2.4	16	84	8	53	17	0	22	60	1.37
36966247--36966657	212	1.9	210	89	2	628	28	14	25	32	1.94
36970512--36970585	38	1.9	38	83	0	94	27	13	25	33	1.93
36976784--36976837	22	2.4	23	78	9	76	33	24	7	35	1.83
36977655--36977699	22	2.0	22	86	0	63	44	20	13	22	1.85
36978533--36978928	47	8.4	47	78	6	390	29	18	30	21	1.97
36979505--36979765	31	8.5	31	88	2	348	24	17	21	37	1.94
36981545--36981585	22	1.9	21	85	5	55	51	4	17	26	1.65
36984195--36984519	156	2.1	156	85	2	438	33	17	18	30	1.95
36984881--36985064	31	6.0	31	76	8	151	23	18	18	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36984882--36985056	92	1.9	92	82	4	219	22	18	19	38	1.93
36984877--36985072	62	3.2	61	78	6	209	22	17	17	41	1.90
36986552--36986599	16	3.1	16	74	17	55	37	14	2	45	1.57
36986546--36986602	14	3.9	14	72	20	53	35	12	1	50	1.50
36986884--36987050	86	1.9	86	91	0	271	26	27	18	27	1.98
36986883--36987100	86	2.5	86	84	1	267	26	27	18	27	1.98
36987779--36987916	31	4.5	31	80	5	145	31	13	17	38	1.88
36987781--36987916	62	2.2	62	86	0	191	30	13	17	38	1.88
36988822--36988903	23	3.4	23	82	9	101	25	32	18	23	1.97
36988860--36988911	23	2.4	21	87	9	70	25	34	17	23	1.96
36988932--36989117	55	3.4	54	75	3	165	44	28	12	14	1.81
36994370--36994407	14	2.8	14	88	4	51	34	0	13	52	1.40
36998969--36999045	29	2.6	29	82	10	93	57	5	5	32	1.43
37000714--37000750	17	2.1	19	90	10	60	16	16	10	56	1.66
37024467--37024494	2	14.0	2	100	0	56	50	0	0	50	1.00
37025411--37025475	29	2.2	29	83	0	76	32	9	12	46	1.73
37025428--37025544	29	4.1	29	66	16	66	33	11	11	43	1.77
37025586--37025648	29	2.2	29	82	0	81	38	12	11	38	1.79
37025596--37025656	29	2.1	29	84	6	79	39	14	9	36	1.80
37027496--37027520	1	25.0	1	100	0	50	0	0	0	100	0.00
37031029--37031078	21	2.4	21	86	6	66	2	16	6	76	1.08
37035936--37036116	27	6.7	27	71	7	82	28	17	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37035924--37036130	54	3.8	54	72	2	173	27	17	17	36	1.93
37048959--37049017	14	4.1	15	75	14	54	44	3	0	52	1.17
37055332--37055376	2	22.5	2	95	0	81	0	46	2	51	1.13
37071616--37071663	26	1.9	25	91	8	80	50	4	0	45	1.21
37071690--37071749	27	2.4	26	81	13	74	45	1	1	51	1.21
37071601--37071768	91	1.9	90	86	6	241	53	2	1	42	1.23
37084964--37085006	2	21.5	2	85	0	59	46	4	2	46	1.36
37086370--37086409	19	2.1	19	100	0	80	37	17	25	20	1.94
37087768--37087798	2	16.0	2	93	6	55	51	0	0	48	1.00
37091854--37091995	2	72.5	2	82	14	172	47	1	2	47	1.22
37093027--37093067	21	2.0	21	90	0	64	31	29	9	29	1.89
37094489--37094525	2	18.5	2	89	10	58	51	0	45	2	1.15
37094489--37094525	11	3.5	11	92	3	58	51	0	45	2	1.15
37094649--37094679	2	15.5	2	100	0	62	51	0	48	0	1.00
37100938--37100969	2	16.0	2	100	0	64	50	0	0	50	1.00
37101298--37101328	2	15.5	2	100	0	62	51	0	0	48	1.00
37100934--37101643	359	2.0	357	99	0	1402	38	16	14	29	1.89
37103322--37103357	2	18.0	2	100	0	72	50	0	0	50	1.00
37104715--37104748	7	4.9	7	92	0	59	47	11	26	14	1.79
37110082--37110117	2	18.0	2	88	11	56	50	0	47	2	1.15
37110082--37110117	11	3.4	11	92	3	56	50	0	47	2	1.15
37111685--37111715	2	15.5	2	93	0	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37112116--37112164	18	2.6	18	80	6	53	61	0	2	36	1.08
37115087--37115134	15	3.2	15	78	0	51	29	16	14	39	1.88
37115110--37115143	15	2.3	15	94	0	59	35	14	14	35	1.87
37115337--37115452	35	3.3	35	82	0	124	48	20	12	18	1.81
37115384--37115482	35	2.8	35	81	0	99	43	20	14	22	1.87
37115691--37115754	29	2.3	28	89	5	94	20	29	4	45	1.71
37118284--37118311	2	14.0	2	100	0	56	50	0	0	50	1.00
37123144--37124050	495	1.8	495	85	2	1250	37	15	16	29	1.91
37125120--37125160	16	2.6	16	84	0	55	51	17	2	29	1.58
37132832--37132929	19	5.1	19	61	11	56	20	16	40	22	1.91
37133263--37133305	21	2.0	21	81	0	50	32	27	11	27	1.92
37134590--37134692	30	3.5	29	69	12	75	32	16	7	43	1.76
37140672--37140744	38	1.9	38	91	0	119	10	28	16	43	1.82
37163029--37163162	62	2.2	62	82	5	155	41	29	4	23	1.74
37173721--37173765	23	2.0	23	86	4	65	51	13	8	26	1.70
37173454--37173820	184	2.0	186	90	1	576	40	13	17	27	1.88
37174289--37174328	2	20.0	2	100	0	80	50	0	0	50	1.00
37183101--37183131	15	2.0	16	93	6	55	77	6	0	16	0.97
37188169--37188233	26	2.6	25	87	4	103	38	12	16	32	1.86
37188301--37188356	20	2.8	20	78	2	60	30	0	8	60	1.27
37190617--37190715	33	3.0	33	83	0	126	32	23	8	36	1.84
37192008--37192041	16	2.2	15	94	5	59	50	5	29	14	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37196541--37196608	20	3.4	20	87	0	100	32	11	20	35	1.89
37200028--37200057	8	3.8	8	90	0	51	40	13	0	46	1.43
37207197--37207226	7	4.3	7	100	0	60	13	0	0	86	0.57
37208178--37208232	26	2.1	26	89	0	83	50	12	12	23	1.74
37222315--37222381	35	1.9	34	87	3	98	19	14	20	44	1.86
37224060--37224089	14	2.2	13	94	5	51	0	10	0	90	0.47
37238490--37238536	22	2.1	23	84	11	62	51	21	4	23	1.65
37239564--37239607	22	2.0	22	95	0	79	47	9	25	18	1.77
37256137--37256241	46	2.3	44	82	10	124	22	2	0	74	0.95
37256143--37256243	7	13.4	7	71	15	69	21	2	0	75	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106