genome.fa.s2.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  63  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23814316--23814397	42	1.9	43	87	2	121	26	17	32	23	1.96
23814877--23814913	19	1.9	19	100	0	74	27	21	27	24	1.99
23816358--23816420	20	3.2	20	90	2	101	30	41	3	25	1.71
23816419--23816528	43	2.6	43	91	2	168	20	38	19	22	1.94
23821253--23821319	31	2.2	31	84	7	84	41	5	17	34	1.74
23823916--23823963	2	24.0	2	100	0	96	50	0	0	50	1.00
23843639--23843792	42	3.7	42	83	0	182	24	21	32	21	1.98
23843638--23843792	84	1.8	84	86	2	222	24	21	32	21	1.98
23855807--23855900	27	3.5	27	85	2	127	9	23	13	53	1.69
23855888--23855942	15	3.9	14	86	13	69	1	20	1	76	0.97
23855903--23855942	5	8.4	5	94	5	66	0	20	0	80	0.72
23856100--23856172	36	2.1	36	84	5	96	35	27	9	27	1.88
23856533--23856569	2	18.5	2	100	0	74	48	0	0	51	1.00
23860947--23861014	21	3.2	21	83	4	84	25	16	20	38	1.92
23863864--23863891	3	9.3	3	100	0	56	0	32	0	67	0.91
23864650--23864775	42	3.0	42	85	0	171	23	21	31	23	1.98
23864816--23864841	2	13.0	2	100	0	52	50	0	0	50	1.00
23870255--23870303	2	24.5	2	91	0	80	46	2	2	48	1.25
23876861--23876986	43	2.9	43	80	9	132	21	37	17	23	1.94
23881152--23881206	26	2.1	26	89	0	83	50	9	9	30	1.65
23884467--23884688	92	2.4	92	85	1	286	21	9	29	39	1.86
23886029--23886157	43	3.0	42	87	5	179	24	18	34	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23891340--23891378	18	2.1	19	90	4	62	64	7	28	0	1.21
23901556--23901650	34	2.8	33	81	9	102	17	9	34	37	1.83
23901568--23901650	35	2.4	33	86	6	103	20	8	33	37	1.83
23901774--23901842	15	4.8	15	72	15	56	68	2	28	0	1.04
23901777--23901835	4	15.2	4	79	13	70	71	3	25	0	1.02
23901774--23901837	19	3.4	18	81	12	76	70	3	26	0	1.02
23901777--23901835	23	2.6	23	86	0	82	71	3	25	0	1.02
23903004--23903128	43	2.9	42	89	3	187	23	18	36	22	1.95
23907361--23907385	6	4.2	6	100	0	50	0	16	0	84	0.63
23913671--23913741	32	2.2	32	97	0	133	19	14	12	53	1.72
23913810--23913838	2	14.5	2	100	0	58	51	0	48	0	1.00
23914494--23914606	36	3.1	36	76	7	95	24	13	31	30	1.93
23921197--23921245	20	2.4	20	86	10	64	67	0	32	0	0.91
23925494--23925595	39	2.6	39	87	0	141	28	12	34	24	1.92
23947856--23948000	75	1.9	75	100	0	290	25	17	16	40	1.90
23949261--23949383	43	2.9	43	84	7	135	21	35	17	25	1.95
23952290--23952535	55	4.6	55	84	3	288	21	14	36	27	1.92
23956658--23956769	42	2.7	42	83	2	136	23	31	17	27	1.97
23956662--23956791	42	3.1	42	80	2	100	26	31	16	26	1.96
23959272--23959310	17	2.3	17	81	0	51	33	0	23	43	1.54
23959424--23959632	55	3.8	55	88	2	296	25	16	31	26	1.96
23967776--23967805	15	2.0	15	93	0	51	36	0	20	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23972636--23972802	68	2.5	68	80	2	165	34	18	8	38	1.81
23977555--23977797	130	1.9	128	82	3	308	34	17	14	33	1.90
23983124--23983300	49	3.6	49	77	0	183	28	10	24	36	1.89
23987300--23987340	5	8.2	5	88	0	64	39	0	17	43	1.49
23988965--23989002	20	1.9	20	94	0	67	31	7	21	39	1.82
23993823--23994014	81	2.4	81	80	2	199	24	34	17	23	1.96
23994960--23994998	19	2.1	19	90	0	60	58	0	2	38	1.12
23997185--23997255	34	2.1	34	100	0	142	42	2	14	40	1.60
23997742--23997779	19	2.0	20	94	5	69	18	36	10	34	1.85
24003655--24003819	31	5.3	31	87	0	213	35	18	15	30	1.92
24003852--24004012	87	1.9	87	85	2	225	34	23	11	29	1.91
24003840--24004023	87	2.1	87	78	2	217	32	23	15	28	1.95
24004597--24004674	23	3.4	21	76	13	66	29	26	14	29	1.95
24004829--24005016	23	8.3	23	74	5	132	23	30	14	31	1.94
24004916--24005016	45	2.2	46	78	1	114	22	30	14	31	1.94
24005045--24005143	23	4.3	23	86	0	135	25	37	10	27	1.88
24007728--24007759	12	2.7	12	95	0	55	37	25	9	28	1.87
24008735--24008780	19	2.2	20	81	14	58	45	6	6	41	1.56
24008867--24008919	27	1.9	26	82	17	63	41	0	3	54	1.18
24008896--24008935	16	2.4	18	84	16	59	45	0	5	50	1.23
24009414--24009450	10	3.9	10	82	13	51	8	2	40	48	1.47
24015254--24015279	1	26.0	1	100	0	52	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24022024--24022125	39	2.6	38	87	3	141	25	13	34	26	1.93
24023907--24023957	21	2.5	20	81	9	57	62	1	35	0	1.06
24025045--24025072	2	14.0	2	100	0	56	50	0	0	50	1.00
24025790--24025828	2	19.5	2	100	0	78	48	0	0	51	1.00
24026446--24026495	3	16.7	3	95	0	55	34	0	10	56	1.33
24027033--24027187	34	4.6	34	84	3	197	21	18	25	34	1.96
24027033--24027187	66	2.3	67	85	2	204	21	18	25	34	1.96
24027544--24027656	58	1.9	58	90	0	181	46	10	13	30	1.77
24027915--24027952	3	12.7	3	88	0	58	34	2	0	63	1.09
24038336--24038454	63	1.9	63	85	3	168	33	12	20	33	1.90
24041836--24041877	20	2.1	20	86	0	57	71	9	0	19	1.13
24043709--24043763	19	3.2	19	78	19	66	30	1	3	63	1.22
24070794--24070877	30	2.8	30	76	7	89	30	16	16	35	1.92
24080460--24080524	2	33.5	2	88	11	100	47	1	0	50	1.10
24080460--24080538	21	3.8	22	84	14	98	45	2	0	51	1.14
24080461--24080524	23	2.7	24	90	7	103	46	1	0	51	1.10
24083077--24083107	7	4.4	7	100	0	62	12	25	0	61	1.32
24085059--24085109	23	2.2	23	89	0	75	27	39	5	27	1.79
24085118--24085236	43	2.8	43	78	0	112	21	31	19	26	1.97
24087244--24087279	11	3.4	11	88	7	56	66	11	22	0	1.22
24087292--24087332	21	1.9	22	90	5	66	51	7	24	17	1.70
24087292--24087336	20	2.2	21	84	11	58	55	6	22	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24087291--24087339	21	2.3	21	82	3	62	57	6	20	16	1.60
24093908--24093952	2	24.5	2	82	17	62	55	0	0	44	0.99
24093910--24093953	23	1.9	23	90	9	72	56	0	0	43	0.99
24093907--24093953	25	2.0	23	91	8	76	57	0	0	42	0.98
24117010--24117034	12	2.1	12	100	0	50	48	8	8	36	1.62
24128758--24128782	13	1.9	13	100	0	50	48	8	0	44	1.32
24133489--24133521	5	6.8	5	93	6	59	39	21	0	39	1.53
24133489--24133521	14	2.3	15	94	5	59	39	21	0	39	1.53
24133556--24133601	15	3.1	15	81	12	58	56	17	2	23	1.52
24136073--24136110	19	2.0	19	94	0	67	42	28	0	28	1.56
24137052--24137092	21	2.1	19	86	9	55	29	0	9	60	1.28
24139221--24139418	77	2.6	70	78	13	184	39	13	9	37	1.77
24139253--24139418	77	2.2	77	93	1	280	39	14	9	36	1.78
24156927--24156969	16	2.5	17	81	11	52	6	34	0	58	1.25
24157770--24158033	55	4.8	55	89	0	393	21	15	35	27	1.93
24157889--24157973	26	3.1	28	64	21	70	17	15	40	27	1.89
24164025--24164143	43	2.8	43	89	2	177	21	21	37	19	1.94
24164035--24164156	43	2.8	43	88	2	174	22	18	39	18	1.92
24164142--24164204	20	3.2	20	90	2	101	25	3	41	30	1.71
24171908--24172029	43	2.8	43	88	2	174	22	18	39	18	1.92
24172015--24172074	20	3.2	20	81	15	83	25	3	41	30	1.71
24172027--24172071	17	2.7	17	86	3	65	24	2	42	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24172079--24172109	2	15.5	2	93	0	53	48	3	0	48	1.17
24173067--24173172	54	2.0	54	96	0	194	19	14	40	25	1.89
24192710--24192751	22	1.9	22	85	0	57	28	4	7	59	1.44
24198066--24198185	42	2.7	42	87	8	150	44	4	4	47	1.41
24198115--24198184	21	3.3	21	66	7	61	44	1	4	50	1.30
24200160--24200189	15	2.0	15	93	0	51	40	23	6	30	1.80
24207033--24207089	30	1.9	30	82	3	71	26	19	7	47	1.74
24284489--24284538	21	2.2	21	82	10	55	42	4	2	52	1.31
24286208--24286265	28	2.1	27	81	12	73	32	22	20	24	1.98
24290137--24290161	13	1.9	13	100	0	50	44	0	8	48	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106