genome.fa.s2.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  32  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12406545--12406607	29	2.2	29	91	5	101	20	28	7	42	1.80
12414597--12414945	190	1.8	189	88	0	527	28	19	23	29	1.98
12415514--12415568	23	2.4	23	93	0	92	29	12	34	23	1.92
12415587--12415765	47	3.8	46	86	5	243	30	16	27	25	1.96
12415642--12415765	23	5.3	23	66	11	72	28	16	30	25	1.96
12415570--12415799	47	4.9	47	84	2	239	28	16	29	26	1.96
12415570--12415799	94	2.4	94	82	5	268	28	16	29	26	1.96
12416453--12416718	31	8.6	31	90	1	358	30	16	18	33	1.94
12417952--12418091	31	4.5	31	85	1	183	34	17	15	32	1.91
12417952--12418091	62	2.3	62	91	2	219	34	17	15	32	1.91
12422419--12422459	21	2.0	21	85	0	55	4	14	4	75	1.14
12427600--12427656	28	2.0	28	100	0	114	28	14	7	50	1.68
12432279--12432325	2	24.0	2	91	4	78	48	0	2	48	1.13
12446313--12446474	74	2.2	74	82	2	182	38	14	22	23	1.92
12454647--12454682	18	2.0	18	88	0	54	72	0	27	0	0.85
12454704--12454742	13	3.1	12	88	7	51	76	0	23	0	0.78
12454708--12454746	19	2.1	19	95	0	69	76	0	23	0	0.78
12454641--12454805	60	2.7	61	80	8	169	62	5	29	2	1.30
12454766--12454829	13	4.9	13	77	7	67	76	0	21	1	0.87
12454766--12454829	26	2.5	26	90	7	103	76	0	21	1	0.87
12454764--12454835	7	11.1	7	78	11	66	75	0	23	1	0.89
12454766--12454836	6	11.2	6	75	11	61	76	0	22	1	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12454766--12454829	27	2.5	24	83	14	83	76	0	21	1	0.87
12454707--12454891	93	2.0	96	84	11	249	65	4	27	2	1.25
12454857--12454887	13	2.5	13	94	5	55	80	0	19	0	0.71
12454860--12454896	11	3.5	11	85	7	51	81	0	18	0	0.70
12455506--12455802	60	5.0	59	88	2	409	23	17	35	23	1.95
12455506--12455802	119	2.5	118	84	5	391	23	17	35	23	1.95
12457660--12457694	2	17.5	2	93	0	61	51	2	0	45	1.16
12462477--12462512	18	2.0	18	88	0	54	72	0	27	0	0.85
12471907--12472068	74	2.2	74	80	2	182	42	16	17	24	1.88
12477986--12478171	55	3.4	55	79	4	205	11	12	31	44	1.79
12478201--12478279	23	3.4	23	83	0	104	22	20	29	27	1.98
12478265--12478347	31	2.7	31	84	3	96	26	15	22	34	1.94
12482537--12482829	31	9.5	31	81	1	338	36	19	17	25	1.94
12482545--12482821	93	3.0	93	87	2	396	36	19	16	26	1.94
12483129--12483311	31	5.9	31	75	2	116	24	16	30	27	1.97
12483130--12483317	93	2.0	92	82	4	225	23	17	30	28	1.97
12483397--12483442	13	3.1	15	78	18	51	45	0	13	41	1.43
12483457--12483503	14	3.2	15	77	14	53	46	4	8	40	1.54
12483370--12483528	52	3.2	51	77	9	150	47	3	11	37	1.57
12485059--12485418	31	11.6	31	86	0	441	37	20	19	23	1.94
12485784--12486153	156	2.4	156	85	0	463	30	18	18	32	1.95
12487102--12487297	43	4.6	43	88	2	243	22	33	17	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12487102--12487297	86	2.3	86	86	1	268	22	33	17	26	1.96
12490693--12490847	31	5.0	31	94	0	247	35	20	20	23	1.96
12491333--12491452	53	2.3	53	88	0	168	27	30	18	24	1.98
12491440--12491712	47	5.8	47	79	2	280	23	32	17	26	1.97
12491448--12491712	94	2.8	93	87	3	370	23	32	16	27	1.96
12491440--12491712	141	1.9	141	81	7	331	23	32	17	26	1.97
12491678--12491736	24	2.5	24	85	0	82	20	32	18	28	1.96
12491631--12491783	71	2.2	71	82	0	189	22	32	17	27	1.97
12507651--12507681	1	31.0	1	100	0	62	0	100	0	0	0.00
12508188--12508226	19	2.2	19	86	9	55	12	15	0	71	1.14
12508618--12509215	301	2.0	295	90	3	822	38	19	12	29	1.88
12511055--12511079	9	2.8	9	100	0	50	36	32	0	32	1.58
12511521--12511579	31	1.9	31	89	0	91	47	13	16	22	1.82
12524907--12524938	2	16.0	2	93	0	55	53	0	46	0	1.00
12524903--12524935	10	3.3	10	95	0	57	57	0	42	0	0.98
12524899--12524929	14	2.2	14	94	0	53	61	0	38	0	0.96
12528871--12528946	36	2.1	36	97	0	143	60	3	19	15	1.51
12528889--12528944	18	3.1	18	66	19	53	58	1	23	16	1.47
12529650--12529685	16	2.2	16	90	0	54	63	13	8	13	1.50
12532620--12532669	25	2.0	25	84	7	66	18	24	12	46	1.82
12532714--12532754	5	8.6	5	94	5	68	0	19	0	80	0.71
12540070--12540107	19	2.0	19	94	0	67	28	0	28	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12540273--12540332	30	2.1	29	81	6	68	30	8	23	38	1.84
12543070--12543104	18	1.9	18	88	0	52	20	22	14	42	1.88
12545390--12545638	72	3.4	72	86	1	320	36	20	18	24	1.95
12549896--12550000	35	3.2	32	70	14	95	40	27	7	24	1.82
12549859--12550007	67	2.2	68	89	1	219	34	26	11	26	1.91
12549880--12549985	35	3.1	35	69	13	103	37	27	10	24	1.88
12557758--12557823	29	2.3	29	84	2	80	43	16	10	28	1.81
12558411--12558626	74	3.0	72	79	8	208	21	19	17	42	1.90
12559635--12559741	40	2.8	40	78	13	93	38	28	12	20	1.89
12571578--12571641	31	2.1	31	93	0	110	50	4	6	39	1.49
12575638--12575737	18	5.6	17	71	13	69	39	5	8	48	1.55
12575653--12575879	107	2.1	106	86	1	303	37	6	11	44	1.67
12575624--12575899	142	2.0	138	86	2	390	37	6	12	44	1.67
12575624--12575879	35	7.3	35	83	3	257	36	5	12	45	1.66
12580260--12580341	25	3.1	25	67	13	74	24	42	12	20	1.86
12583442--12584427	491	2.0	491	94	0	1729	31	17	20	29	1.96
12588497--12588546	10	5.0	10	82	0	64	64	4	10	22	1.41
12588498--12588546	20	2.5	20	100	0	98	65	4	10	20	1.39
12596952--12597007	21	2.7	21	97	0	103	32	14	16	37	1.88
12598043--12598218	80	2.2	80	83	6	212	32	11	22	34	1.89
12604504--12604539	16	2.2	16	90	0	54	19	2	0	77	0.88
12604504--12604566	32	2.0	31	82	17	76	17	3	1	77	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12615400--12615453	2	27.5	2	85	10	76	46	1	1	50	1.23
12615400--12615451	15	3.3	15	89	7	77	46	1	1	50	1.23
12615400--12615453	11	4.6	12	84	11	76	46	1	1	50	1.23
12617399--12617432	2	17.0	2	100	0	68	50	0	0	50	1.00
12617559--12617599	2	21.0	2	95	5	75	51	0	0	48	1.00
12622838--12622889	21	2.5	21	100	0	104	23	26	19	30	1.98
12627361--12627403	21	2.0	22	82	13	54	48	0	6	44	1.29
12627441--12627492	22	2.4	22	81	12	54	53	1	0	44	1.11
12648846--12648907	31	2.0	31	96	0	115	53	6	11	29	1.61
12651652--12651698	2	24.5	2	82	8	62	44	0	2	53	1.12
12651651--12651700	20	2.5	20	90	6	75	42	0	4	54	1.19
12656525--12656574	26	1.9	26	84	8	66	36	16	12	36	1.85
12657512--12657573	26	2.4	26	94	0	106	32	40	3	24	1.71
12657808--12657931	42	3.0	42	92	0	212	22	33	21	21	1.97
12663194--12663226	17	1.9	17	93	0	57	54	0	24	21	1.45
12664375--12664403	4	7.2	4	100	0	58	24	0	24	51	1.48
12664401--12664443	2	21.5	2	90	0	59	0	4	46	48	1.22
12669364--12669416	28	1.9	27	88	3	79	28	22	18	30	1.98
12669461--12669506	20	2.3	20	96	0	83	45	21	4	28	1.71
12681059--12681160	42	2.4	42	93	0	168	21	22	34	21	1.97
12687309--12687433	42	3.0	42	82	5	144	23	24	30	22	1.99
12687474--12687505	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12687657--12687710	2	27.0	2	96	0	99	50	1	0	48	1.11
12690668--12690793	42	3.0	42	89	2	191	18	21	35	24	1.95
12690837--12690866	2	15.0	2	92	0	51	50	3	0	46	1.18
12690960--12690991	2	16.0	2	93	0	55	50	3	0	46	1.17
12690837--12691081	125	2.0	124	99	0	472	33	4	17	43	1.70
12702047--12702121	28	2.7	28	81	2	89	29	17	21	32	1.96
12707613--12707647	2	17.5	2	87	0	52	45	5	0	48	1.26
12709856--12709901	19	2.7	16	78	18	56	0	34	0	65	0.93
12709856--12709912	7	8.1	7	77	14	55	0	36	0	63	0.95
12709862--12709907	19	2.4	19	92	0	83	0	34	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106