genome.fa.s2.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  86  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32673682--32674180	252	2.0	253	90	1	786	33	17	13	36	1.89
32675484--32675522	20	1.9	21	89	5	62	25	10	23	41	1.86
32677504--32677606	38	2.7	38	86	8	129	23	17	35	23	1.95
32679827--32679898	30	2.4	30	78	0	90	41	15	19	23	1.89
32688938--32688992	26	2.1	26	96	0	101	27	5	25	41	1.77
32699701--32699784	43	2.0	43	88	4	125	47	13	11	27	1.77
32705697--32705746	21	2.4	20	80	9	64	20	32	30	18	1.96
32705709--32705748	21	1.9	21	94	0	71	20	35	27	17	1.95
32705697--32705755	21	2.8	21	73	14	59	20	30	32	16	1.95
32713904--32714208	152	2.0	152	93	1	522	26	15	17	40	1.90
32714374--32714399	2	13.0	2	100	0	52	0	50	0	50	1.00
32714415--32714583	89	1.9	89	85	0	230	34	13	13	39	1.83
32730017--32730054	2	19.0	2	100	0	76	50	0	0	50	1.00
32731072--32731108	2	19.0	2	94	5	67	48	0	0	51	1.00
32737815--32737855	22	2.0	22	85	9	59	46	7	7	39	1.60
32738069--32738164	2	48.0	2	88	8	142	50	3	0	45	1.17
32758695--32758749	15	3.7	15	78	4	58	41	14	0	43	1.45
32760211--32760243	17	1.9	17	88	11	50	54	0	0	45	0.99
32760214--32760248	15	2.3	15	90	0	52	60	0	0	40	0.97
32760546--32760668	28	4.6	28	70	19	84	34	2	2	60	1.23
32760551--32760624	12	5.5	12	73	20	58	33	2	1	62	1.18
32760568--32760640	33	2.1	36	83	16	93	31	4	0	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32762342--32762385	21	2.1	21	86	0	61	38	4	6	50	1.50
32782064--32782270	77	2.7	78	86	5	276	32	19	14	33	1.92
32785012--32785119	30	3.8	30	72	12	100	25	31	28	13	1.94
32787308--32787363	2	28.0	2	100	0	112	50	0	0	50	1.00
32791773--32791844	34	2.1	34	94	2	128	30	38	2	27	1.71
32791780--32791837	18	3.3	18	66	9	57	25	43	3	27	1.71
32792181--32792273	39	2.4	39	96	1	168	37	20	15	26	1.92
32799484--32799539	24	2.3	24	90	0	85	39	5	19	35	1.75
32802317--32802363	19	2.6	18	86	6	76	36	2	12	48	1.53
32802477--32802571	24	4.0	24	76	5	84	40	7	16	35	1.77
32802473--32802574	48	2.1	47	81	3	114	39	6	18	35	1.78
32803929--32803956	2	14.0	2	100	0	56	50	0	0	50	1.00
32804368--32804424	29	2.0	29	100	0	114	35	10	1	52	1.46
32807318--32807355	19	2.0	19	89	0	58	28	0	26	44	1.54
32821486--32821545	28	2.1	29	87	6	86	26	18	20	35	1.95
32821756--32821792	19	1.9	19	88	0	56	29	24	2	43	1.68
32822720--32822789	30	2.3	30	87	0	104	31	15	8	44	1.77
32823000--32823051	22	2.4	22	100	0	104	44	13	13	28	1.82
32852925--32853040	33	3.5	33	77	2	126	34	32	7	25	1.84
32866209--32866276	34	2.0	34	100	0	136	52	11	17	17	1.73
32869771--32869831	30	2.1	30	81	9	72	31	3	9	55	1.48
32877054--32877083	15	1.9	16	93	6	53	60	0	3	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32879627--32879665	20	2.0	19	85	5	51	20	28	5	46	1.72
32879825--32879859	3	12.0	3	87	6	54	65	0	0	34	0.93
32885192--32885222	16	1.9	16	93	0	53	16	16	0	67	1.23
32893234--32893289	29	2.0	28	82	10	69	17	5	5	71	1.24
32894985--32895015	4	7.8	4	100	0	62	25	0	22	51	1.48
32898770--32898837	29	2.4	28	80	7	82	23	7	8	60	1.52
32909860--32909936	24	3.2	24	80	7	93	41	16	15	25	1.88
32912193--32912524	26	13.5	23	76	11	132	35	24	12	26	1.92
32912262--32912556	26	11.7	26	85	4	336	36	24	12	26	1.91
32912212--32912556	52	6.9	52	78	8	308	36	24	12	26	1.91
32912262--32912556	100	2.9	103	81	8	322	36	24	12	26	1.91
32912193--32912556	126	2.9	122	82	9	382	35	24	12	27	1.91
32912305--32912598	152	2.0	151	82	6	359	37	23	12	26	1.90
32913458--32913513	30	1.9	30	85	7	80	32	5	1	60	1.29
32914386--32914460	29	2.6	28	83	4	80	36	9	13	41	1.76
32914416--32914482	32	2.1	32	88	0	98	37	14	10	37	1.81
32914574--32914642	24	2.9	24	88	0	102	24	14	15	44	1.84
32917731--32917777	19	2.4	19	86	10	60	6	21	2	70	1.20
32925824--32925869	19	2.4	19	85	0	56	52	0	0	47	1.00
32925842--32925883	14	3.0	15	83	13	54	52	0	0	47	1.00
32932397--32932441	23	1.9	24	86	13	67	22	40	20	17	1.92
32937828--32937873	3	15.3	3	100	0	92	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32940329--32940397	27	2.5	28	79	9	79	43	10	10	36	1.72
32940352--32940471	30	4.4	28	71	18	92	36	11	14	37	1.82
32940352--32940470	29	4.3	27	70	19	86	36	10	14	37	1.81
32940482--32940536	24	2.3	25	84	9	78	29	5	21	43	1.75
32945567--32945652	25	3.4	25	83	3	102	26	20	13	38	1.91
32951211--32951267	30	1.9	30	85	3	80	24	5	17	52	1.65
32960053--32960106	28	1.9	28	88	0	81	48	9	14	27	1.75
32969120--32969357	35	6.3	39	70	19	164	25	14	19	40	1.90
32969123--32969408	76	3.8	76	81	2	333	26	15	17	39	1.90
32969112--32969397	152	1.9	152	86	1	412	25	15	18	40	1.90
32977766--32977925	25	6.5	26	80	7	174	30	20	9	39	1.84
32977766--32977925	75	2.2	75	88	4	236	30	20	9	39	1.84
32980303--32980336	16	2.1	17	89	10	54	64	8	0	26	1.22
32982073--32982183	12	9.2	12	87	0	132	45	5	3	45	1.43
32982073--32982183	8	13.9	8	85	0	132	45	5	3	45	1.43
32982073--32982183	20	5.6	20	89	0	132	45	5	3	45	1.43
32987069--32987113	19	2.3	20	88	3	65	44	22	4	28	1.72
32989879--32989911	2	16.5	2	100	0	66	0	0	48	51	1.00
32993208--32993254	20	2.3	20	88	0	67	51	0	4	44	1.21
32993243--32993626	212	1.8	211	89	0	597	40	7	3	48	1.48
32993933--32993961	2	14.5	2	100	0	58	48	0	0	51	1.00
33001109--33001148	21	1.9	21	84	0	53	45	7	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33013990--33014105	43	2.7	43	79	2	126	25	18	34	21	1.96
33023113--33023152	20	2.0	21	90	5	64	70	7	2	20	1.24
33026710--33026757	25	1.9	25	86	0	69	39	10	18	31	1.85
33030633--33030740	47	2.3	48	91	1	173	35	5	12	47	1.64
33036071--33036126	28	2.0	28	96	0	103	28	25	8	37	1.86
33039166--33039199	17	2.0	17	88	0	50	50	2	0	47	1.16
33039128--33039228	51	1.9	54	86	8	145	53	0	0	45	1.07
33039201--33039245	16	2.9	15	86	6	54	46	2	4	46	1.35
33039501--33039541	21	1.9	21	85	5	55	53	0	0	46	1.00
33040648--33040690	17	2.7	15	80	13	50	46	9	0	44	1.35
33046647--33046831	52	3.0	61	74	21	165	41	4	16	37	1.69
33046818--33047005	95	2.0	93	84	6	245	61	7	13	17	1.55
33051662--33051699	19	2.0	19	100	0	76	42	31	0	26	1.56
33056916--33056979	19	3.4	18	85	10	85	43	4	25	26	1.74
33056916--33056979	18	3.4	19	87	6	87	43	4	25	26	1.74
33059170--33059230	23	2.5	24	76	10	70	8	34	6	50	1.58
33060024--33060155	42	3.1	42	86	4	194	24	23	31	21	1.98
33060024--33060177	42	3.7	42	82	8	179	23	22	32	21	1.98
33061210--33061243	17	2.1	17	88	5	52	73	0	17	8	1.08
33061441--33061593	58	2.6	59	92	6	260	35	11	40	12	1.80
33061616--33061837	34	6.4	35	78	13	185	20	17	40	21	1.91
33061616--33061803	70	2.7	68	74	15	179	20	17	40	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33061577--33061803	104	2.2	105	81	7	275	20	16	40	21	1.91
33061617--33061837	104	2.1	103	81	8	252	20	17	40	21	1.91
33070400--33070453	20	2.6	21	80	11	67	42	18	16	22	1.89
33070400--33070465	20	3.3	19	73	25	55	39	19	16	24	1.92
33072678--33072732	22	2.4	23	74	14	60	32	3	9	54	1.49
33075260--33075393	47	2.8	47	76	15	125	40	2	5	52	1.36
33075997--33076033	2	18.5	2	100	0	74	51	0	0	48	1.00
33081345--33081402	28	2.0	29	83	3	73	32	3	0	63	1.11
33115945--33115981	19	1.9	19	94	0	65	29	0	27	43	1.55
33119173--33119209	15	2.4	16	82	17	51	70	5	0	24	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106