genome.fa.s2.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  2  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574477--574539	33	1.9	32	84	15	85	41	1	0	57	1.08
574494--574535	21	2.0	21	90	0	66	38	2	0	59	1.10
589256--589283	2	14.0	2	100	0	56	0	50	0	50	1.00
614345--614407	20	3.0	21	79	9	56	66	3	0	30	1.07
614784--614823	18	2.2	18	86	8	55	45	27	0	27	1.54
622887--622912	6	4.3	6	100	0	52	0	15	46	38	1.46
623089--623125	19	1.9	19	88	0	56	51	2	8	37	1.46
624674--625113	220	2.0	220	96	0	817	22	28	15	33	1.95
627509--627598	47	1.9	47	93	4	155	37	26	14	21	1.92
631791--631954	77	2.1	76	84	9	217	40	5	11	42	1.64
635585--635618	17	2.1	16	88	5	50	50	0	2	47	1.16
635693--635765	29	2.5	30	86	10	98	54	4	0	41	1.19
635722--635780	14	3.7	15	82	17	66	49	5	3	42	1.41
635693--635795	29	3.5	30	79	17	85	52	3	1	41	1.31
647959--648024	33	2.0	33	87	0	96	40	13	6	39	1.69
648107--648200	30	3.1	31	75	7	93	48	8	10	31	1.68
648333--648371	2	19.5	2	94	0	69	46	0	2	51	1.14
698552--698576	5	5.0	5	100	0	50	0	20	0	80	0.72
700697--701211	279	1.8	281	91	2	858	34	7	7	49	1.60
703995--704026	2	16.0	2	100	0	64	50	50	0	0	1.00
718745--718775	16	1.9	16	93	0	53	67	12	0	19	1.22
718780--718841	18	3.2	19	80	15	65	74	8	9	8	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721153--721196	22	2.0	22	90	0	70	6	9	6	77	1.13
736561--736604	19	2.3	19	84	4	52	70	6	18	4	1.27
736579--736615	13	2.9	13	84	15	51	78	2	18	0	0.87
738147--738171	2	12.5	2	100	0	50	48	0	0	52	1.00
743183--743345	81	2.0	81	98	0	317	36	15	14	33	1.89
748134--748171	19	2.0	19	100	0	76	31	15	21	31	1.94
751326--751366	21	2.0	21	85	0	55	24	14	26	34	1.94
753566--753636	37	1.9	37	97	0	133	33	12	21	32	1.91
770803--770846	23	1.9	23	90	0	70	47	2	0	50	1.13
772642--772685	19	2.3	20	81	14	58	0	40	2	56	1.11
790224--790641	207	2.0	205	88	4	626	19	21	40	18	1.91
790677--792278	421	3.8	422	97	0	2980	34	17	21	26	1.95
792848--792900	1	53.0	1	100	0	106	100	0	0	0	0.00
797036--797075	1	40.0	1	89	0	62	95	0	2	0	0.20
811035--811104	26	2.6	27	72	4	70	35	12	14	37	1.84
815622--815696	39	1.9	39	88	0	114	22	9	24	44	1.82
817073--817151	37	2.1	38	85	2	106	15	17	27	39	1.90
852679--852709	7	4.4	7	100	0	62	12	0	0	87	0.55
859777--860126	181	1.9	181	97	0	664	36	20	12	29	1.90
862641--862666	8	3.2	8	100	0	52	76	0	11	11	1.01
890809--890857	25	2.0	25	95	0	89	30	12	4	53	1.57
899010--899470	224	2.0	225	86	0	645	26	8	21	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903793--903835	13	3.3	13	76	0	50	30	4	6	58	1.45
907875--907903	15	1.9	15	100	0	58	79	13	0	6	0.93
916362--916394	17	1.9	17	93	0	57	51	0	21	27	1.48
919205--919254	3	16.7	3	82	0	55	42	2	26	30	1.66
923498--923558	32	1.9	32	86	0	86	47	8	8	36	1.63
926180--926227	2	24.5	2	79	12	55	45	0	4	50	1.21
930256--930292	12	3.1	12	88	0	56	13	29	24	32	1.93
932537--932614	39	2.1	39	82	15	96	43	24	5	26	1.75
935402--935433	2	16.0	2	93	0	55	0	46	0	53	1.00
946413--946487	30	2.6	29	76	19	77	36	4	5	54	1.42
948122--948176	27	2.0	26	86	6	74	52	0	0	47	1.00
948123--948190	27	2.4	27	78	9	73	54	0	0	45	0.99
950056--950086	8	3.9	8	100	0	62	0	38	0	61	0.96
950048--950086	12	3.2	12	85	0	51	0	38	0	61	0.96
956070--956097	2	14.0	2	100	0	56	0	50	0	50	1.00
956119--956144	2	13.0	2	100	0	52	0	50	0	50	1.00
957487--957589	52	2.0	52	92	0	170	26	11	17	44	1.83
958369--958513	73	2.0	73	95	0	263	26	17	15	40	1.89
967054--967078	11	2.3	11	100	0	50	24	20	0	56	1.43
976866--976900	2	17.5	2	87	0	52	0	42	0	57	0.99
983600--983663	31	2.0	32	96	3	121	34	14	18	32	1.91
986414--986457	2	22.0	2	90	0	70	47	4	47	0	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991596--991649	25	2.1	26	86	10	76	64	1	0	33	1.04
991596--991650	22	2.3	23	84	9	67	63	1	0	34	1.05
991620--991660	17	2.3	19	83	12	59	63	0	0	36	0.95
992542--992567	12	2.2	12	100	0	52	30	0	0	69	0.89
993053--993122	2	35.5	2	80	13	83	50	2	1	45	1.25
993055--993133	15	5.2	15	78	7	70	49	3	1	45	1.28
993173--993314	71	2.0	70	84	1	185	34	9	6	48	1.62
994367--994420	24	2.2	24	90	0	81	42	25	12	18	1.86
994416--994463	21	2.3	21	81	0	60	20	12	27	39	1.89
995475--995514	19	2.0	20	90	4	64	52	2	0	45	1.14
1001613--1001684	34	2.2	33	85	5	99	36	13	27	22	1.92
1001623--1001690	34	2.0	34	94	0	118	36	13	26	23	1.92
1011908--1011994	44	2.0	44	90	0	138	42	6	8	42	1.61
1013083--1013292	103	2.0	105	93	3	361	39	7	8	44	1.64
1014518--1014789	134	2.0	134	92	0	454	31	9	21	37	1.86
1018912--1018937	2	13.0	2	100	0	52	50	50	0	0	1.00
1029793--1029911	59	2.0	59	98	0	229	34	20	17	27	1.95
1033788--1033920	49	2.6	50	92	3	223	19	27	12	40	1.87
1039954--1039985	12	2.7	12	95	0	55	18	34	21	25	1.96
1042061--1042092	16	2.0	16	93	0	55	65	0	0	34	0.93
1045117--1045771	27	24.1	27	69	9	251	36	9	12	41	1.75
1045123--1045549	55	7.8	55	75	8	284	36	7	13	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045098--1045346	82	3.0	82	74	12	219	38	8	12	40	1.73
1045095--1045578	137	3.6	137	76	9	303	36	7	12	42	1.72
1045233--1045601	82	4.5	81	75	10	277	36	8	13	42	1.74
1045123--1045576	219	2.1	217	84	1	577	36	8	13	42	1.74
1045701--1045825	28	4.6	27	78	6	117	42	6	4	46	1.50
1069830--1069908	39	2.0	39	88	9	117	58	0	1	40	1.06
1069845--1069908	19	3.2	20	74	12	69	57	0	1	40	1.08
1074940--1074995	2	29.5	2	84	10	73	50	0	1	48	1.11
1075112--1075136	2	12.5	2	100	0	50	52	0	0	48	1.00
1075284--1075337	23	2.3	24	75	9	58	40	7	5	46	1.55
1075293--1075335	22	2.0	23	86	9	63	39	9	6	44	1.64
1083910--1087159	716	4.5	712	71	15	2768	38	11	9	41	1.73
1085941--1085975	17	2.0	18	88	5	54	77	0	0	22	0.78
1085941--1085984	18	2.4	19	81	14	56	72	2	0	25	0.96
1108450--1108507	10	6.4	9	81	16	59	20	1	0	77	0.86
1108457--1108511	19	3.0	18	87	10	76	21	1	0	76	0.88
1114514--1114545	15	2.1	15	94	0	55	34	3	0	62	1.11
1121190--1121257	34	2.0	34	85	0	91	38	22	14	25	1.92
1121137--1121382	124	2.0	124	84	4	318	40	20	14	23	1.90
1122867--1122975	26	3.8	26	70	19	92	38	18	21	22	1.93
1123096--1123308	107	2.0	107	96	0	383	18	15	28	37	1.92
1123337--1123403	14	4.6	15	73	12	59	17	17	10	53	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123337--1123416	29	2.8	28	80	3	88	17	18	10	53	1.71
1123638--1123662	13	1.9	13	100	0	50	20	32	0	48	1.50
1126562--1126588	13	2.1	13	100	0	54	7	0	14	77	0.97
1126948--1127003	4	15.8	4	85	14	63	28	0	0	71	0.86
1126947--1127003	7	8.1	7	85	14	82	29	0	0	70	0.88
1127903--1127939	4	9.8	4	88	11	60	0	21	0	78	0.75
1127958--1128009	17	3.0	18	91	5	81	0	26	0	73	0.84
1127958--1128017	28	2.2	27	84	3	75	0	28	0	71	0.86
1127958--1128018	22	2.7	23	72	23	58	0	27	0	72	0.85
1128044--1128083	20	2.0	20	90	5	62	0	40	0	60	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106