genome.fa.s2.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  21  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9132567--9132727	81	2.0	81	81	2	189	16	30	24	27	1.97
9132660--9132780	27	4.5	27	75	7	95	16	29	23	30	1.96
9132578--9132780	54	3.8	53	76	7	133	16	30	23	29	1.96
9133012--9133052	2	20.5	2	100	0	82	48	0	0	51	1.00
9134091--9134132	2	21.5	2	95	4	77	50	0	0	50	1.00
9136559--9136671	33	3.4	32	78	6	111	23	6	37	32	1.80
9137747--9137897	52	2.9	51	82	2	194	39	15	21	23	1.92
9137750--9137830	25	3.2	25	66	19	58	38	14	24	22	1.92
9137810--9137890	25	3.2	25	66	13	65	45	16	17	20	1.85
9139256--9139315	27	2.2	27	82	5	77	20	36	16	26	1.93
9139255--9139416	81	2.0	81	81	2	191	17	30	22	29	1.97
9139387--9139491	27	3.9	27	75	0	75	17	28	24	29	1.97
9139283--9139491	81	2.6	80	81	1	202	17	29	22	30	1.97
9139391--9139513	54	2.3	54	75	0	120	18	26	23	30	1.98
9139468--9139528	27	2.3	26	80	8	77	21	24	24	29	1.99
9139518--9139572	26	2.1	26	86	0	74	16	29	25	29	1.97
9139569--9139624	26	2.1	26	83	9	69	19	39	17	23	1.92
9140821--9140891	34	2.1	34	100	0	142	46	8	29	15	1.75
9143505--9143543	20	1.9	21	89	5	62	74	2	0	23	0.94
9144277--9144332	25	2.3	25	87	6	80	67	0	30	1	1.01
9146143--9146347	54	3.8	53	86	5	259	22	12	41	22	1.87
9146143--9146344	108	1.9	108	87	4	300	22	12	41	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9146308--9146383	39	1.9	39	89	0	116	27	11	40	19	1.87
9149165--9149212	23	2.1	22	85	11	62	33	4	14	47	1.63
9149165--9149200	11	3.3	11	88	11	56	33	0	16	50	1.46
9151702--9151845	78	1.8	78	87	0	216	40	8	8	42	1.65
9153424--9153507	22	3.9	22	80	3	80	21	10	25	42	1.85
9153426--9153497	22	3.3	22	84	3	92	18	12	27	41	1.86
9153516--9153599	23	3.7	23	85	7	118	35	28	11	23	1.91
9153585--9153765	95	1.9	95	87	2	265	37	25	13	23	1.91
9153562--9153793	121	1.9	118	81	7	272	36	26	13	23	1.92
9153542--9153852	147	2.2	140	85	6	403	36	27	13	22	1.91
9153536--9153819	26	11.7	25	80	9	238	37	27	12	22	1.91
9153653--9153866	26	9.2	21	74	13	86	37	26	14	21	1.91
9155651--9155696	20	2.4	18	79	10	56	67	0	0	32	0.91
9155643--9155717	31	2.3	32	82	11	91	69	0	1	29	0.97
9155655--9155725	31	2.3	31	79	13	83	66	0	2	30	1.06
9156611--9156684	33	2.2	33	83	4	87	31	4	12	52	1.57
9157622--9157685	33	1.9	33	87	0	92	42	18	6	32	1.76
9157748--9157844	30	3.3	29	77	9	97	43	4	15	37	1.66
9157791--9157846	29	1.9	30	85	7	80	46	5	16	32	1.69
9162416--9162601	92	2.0	92	100	0	372	32	16	12	38	1.86
9163868--9163953	33	2.6	33	87	3	111	27	5	1	65	1.23
9164075--9164108	16	2.1	17	88	5	52	61	2	5	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9164193--9164220	13	2.2	13	100	0	56	46	0	0	53	1.00
9182599--9182633	2	17.5	2	100	0	70	51	48	0	0	1.00
9184769--9184795	4	6.8	4	100	0	54	25	0	22	51	1.48
9190264--9190307	16	2.6	16	85	10	52	59	6	0	34	1.24
9193094--9193123	9	3.3	9	100	0	60	46	0	0	53	1.00
9193094--9193129	18	2.0	18	88	0	54	50	0	0	50	1.00
9193119--9193159	16	2.6	16	92	0	64	73	0	2	24	0.96
9193321--9193583	86	3.1	84	87	5	377	27	17	4	51	1.63
9193575--9193614	15	2.7	15	84	7	55	22	5	5	67	1.30
9195940--9195973	17	2.0	17	94	0	59	73	0	2	23	0.97
9195942--9195979	17	2.3	17	86	4	51	73	0	5	21	1.02
9196804--9196867	30	2.1	30	94	0	110	51	10	15	21	1.74
9221612--9221687	33	2.3	32	84	4	98	9	51	5	34	1.56
9222040--9222093	23	2.3	23	90	6	83	51	1	0	46	1.11
9231613--9231661	24	2.0	24	96	0	89	20	28	14	36	1.92
9231974--9232036	33	1.9	33	83	0	81	33	12	19	34	1.89
9249620--9249688	35	2.0	34	97	0	120	31	10	17	39	1.83
9250863--9250888	12	2.2	12	100	0	52	0	15	15	69	1.20
9252729--9252785	30	1.9	30	85	7	80	54	5	7	33	1.50
9256610--9256637	2	14.0	2	100	0	56	50	0	0	50	1.00
9257089--9257145	2	28.0	2	85	3	78	49	3	3	43	1.36
9260124--9260148	13	1.9	13	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9271641--9271698	20	2.7	22	84	15	77	27	0	0	72	0.85
9271632--9271693	30	2.1	30	84	6	81	27	0	0	72	0.85
9271663--9271710	23	2.1	22	84	3	60	25	4	0	70	1.04
9273521--9273553	11	3.1	11	86	4	50	48	0	15	36	1.45
9275758--9275796	18	2.3	18	91	8	64	23	0	0	76	0.78
9275768--9275811	18	2.4	18	85	7	54	22	4	2	70	1.17
9277556--9277643	1	88.0	1	70	0	59	0	1	13	85	0.66
9277556--9277646	6	15.3	6	79	13	82	0	1	14	84	0.68
9277556--9277650	19	4.9	18	76	18	86	0	1	14	84	0.69
9277725--9277829	21	5.0	21	81	6	122	30	13	25	30	1.94
9278062--9278164	47	2.2	47	89	0	161	33	11	25	30	1.91
9277931--9278290	189	1.9	189	91	1	596	34	16	22	26	1.95
9279531--9279694	83	2.0	81	83	4	204	13	22	9	54	1.66
9280059--9280113	18	2.8	19	81	10	67	16	18	0	65	1.27
9283338--9283444	56	1.9	56	90	7	166	32	12	6	47	1.66
9283460--9283484	2	12.5	2	100	0	50	48	0	0	52	1.00
9290930--9290959	13	2.3	13	94	0	51	23	0	3	73	0.98
9307713--9307746	17	2.0	17	88	0	50	52	0	17	29	1.45
9313095--9313125	14	2.2	14	94	0	53	32	9	25	32	1.88
9322921--9323007	45	1.9	45	83	4	113	41	24	12	21	1.88
9324836--9324919	44	1.9	44	87	0	123	26	14	17	41	1.88
9325351--9325564	44	4.7	44	81	9	216	44	14	13	28	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9327969--9328025	30	1.9	30	82	13	73	66	14	3	15	1.38
9328453--9328496	2	22.0	2	100	0	88	50	0	0	50	1.00
9328678--9328702	13	1.9	13	100	0	50	40	8	0	52	1.31
9329519--9329573	23	2.4	23	82	14	78	27	18	12	41	1.86
9329535--9329581	23	2.0	23	84	8	60	29	19	12	38	1.89
9329656--9329680	13	1.9	13	100	0	50	60	8	16	16	1.58
9330590--9330619	14	2.1	14	93	0	51	16	0	6	76	0.99
9330561--9330622	24	2.5	24	78	14	65	19	0	4	75	0.97
9340450--9340483	10	3.3	10	87	4	50	85	0	14	0	0.60
9342302--9342328	14	1.9	14	100	0	54	29	0	11	59	1.32
9351842--9351962	8	16.6	8	80	19	140	39	0	9	50	1.36
9351839--9351960	14	8.7	14	95	0	199	40	0	9	50	1.36
9354911--9355008	36	2.7	36	91	0	169	44	21	15	18	1.86
9354969--9355064	45	2.1	45	79	7	106	45	22	8	22	1.79
9357230--9357271	17	2.5	17	92	0	66	11	38	19	30	1.88
9363520--9363582	21	3.0	21	72	11	58	31	12	9	46	1.74
9367077--9367266	81	2.3	81	87	3	267	21	21	23	33	1.98
9371647--9371716	27	2.6	25	79	16	79	48	0	10	41	1.36
9371650--9371718	26	2.5	28	82	17	92	47	0	10	42	1.37
9371955--9371984	14	2.1	15	93	6	53	36	0	6	56	1.26
9372422--9372456	2	17.5	2	87	0	52	42	0	5	51	1.25
9396866--9396919	17	3.1	17	71	12	56	31	14	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9401253--9401293	21	2.0	21	85	9	57	36	17	4	41	1.71
9401467--9401533	31	2.2	30	81	2	80	38	11	14	34	1.84
9406015--9406181	42	4.0	42	83	3	219	23	34	19	21	1.96
9405986--9406173	84	2.2	84	87	0	259	24	33	19	22	1.97
9407560--9407616	11	5.4	11	73	14	57	0	33	0	66	0.92
9407560--9407616	20	2.7	21	89	5	80	0	33	0	66	0.92
9409526--9409566	21	2.1	18	86	13	55	73	4	14	7	1.22
9409845--9409924	39	2.1	39	90	0	124	15	26	12	46	1.81
9412376--9412400	13	1.9	13	100	0	50	48	8	0	44	1.32
9415576--9415626	15	3.4	15	88	0	75	50	15	1	31	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106