genome.fa.s2.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  61  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23019949--23020151	54	3.7	54	90	0	316	23	45	12	18	1.84
23024042--23024116	35	2.1	35	87	0	105	36	30	14	18	1.91
23024037--23024205	91	1.9	91	86	2	241	37	32	11	18	1.87
23024271--23024422	34	4.4	34	93	0	241	28	26	5	38	1.80
23027547--23027787	62	3.9	62	76	10	215	24	21	18	35	1.95
23027556--23027787	124	1.9	124	80	7	274	24	21	19	34	1.96
23029590--23029667	37	2.1	37	92	0	129	25	35	8	29	1.87
23033854--23033959	43	2.5	43	84	0	131	28	18	33	19	1.96
23033970--23034025	23	2.4	23	87	0	85	25	5	41	28	1.77
23040130--23040198	31	2.3	30	82	2	84	26	23	31	18	1.97
23049001--23049043	15	2.9	15	89	0	68	55	13	2	27	1.51
23053250--23053301	21	2.5	21	77	0	59	65	1	11	21	1.34
23056906--23056943	19	2.0	19	94	0	67	28	0	28	42	1.56
23063978--23064015	19	2.0	19	94	0	67	28	0	28	42	1.56
23066824--23066886	20	3.2	19	86	2	81	30	38	4	26	1.77
23066885--23067037	43	3.6	43	81	3	148	20	32	20	26	1.97
23074743--23074805	20	3.2	20	90	2	101	30	41	3	25	1.71
23074804--23074965	43	3.8	43	93	1	254	19	37	20	21	1.94
23087821--23088081	107	2.4	107	85	2	355	36	7	13	42	1.72
23087790--23088082	35	8.3	35	82	3	322	35	7	13	43	1.71
23091956--23092061	43	2.5	44	78	7	119	30	17	33	17	1.94
23094388--23094439	24	2.2	24	85	0	68	9	36	17	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23094399--23094450	12	4.3	12	77	0	50	7	42	13	36	1.73
23094399--23094450	24	2.2	24	82	0	59	7	42	13	36	1.73
23094432--23094487	24	2.3	24	90	0	85	5	42	19	32	1.74
23096741--23096784	23	1.9	23	81	9	54	27	11	29	31	1.91
23096970--23097055	23	3.7	23	88	0	127	26	15	29	29	1.96
23109212--23109330	37	3.2	37	89	4	186	24	36	10	27	1.89
23114770--23115015	115	2.1	116	88	3	359	45	25	10	17	1.81
23115856--23116031	67	2.6	68	90	3	270	25	13	26	35	1.92
23115856--23116019	35	4.9	32	73	12	134	25	14	26	34	1.93
23125422--23125466	20	2.2	21	84	11	58	57	6	20	15	1.60
23125420--23125467	21	2.3	20	76	16	53	58	6	20	14	1.58
23128256--23128304	25	2.0	25	92	8	82	59	0	0	40	0.98
23128276--23128334	32	1.9	30	86	6	82	54	1	0	44	1.10
23128279--23128628	113	3.2	109	71	15	283	54	4	0	40	1.23
23128403--23128443	20	2.1	20	86	4	57	51	0	0	48	1.00
23128419--23128566	26	5.7	27	67	23	84	53	3	0	43	1.17
23128385--23128578	104	1.9	105	87	7	288	55	3	0	41	1.19
23128419--23128566	27	5.7	26	68	23	98	53	3	0	43	1.17
23128496--23128781	154	1.9	154	89	4	452	54	3	0	41	1.21
23128608--23128713	41	2.6	41	76	13	101	55	2	0	41	1.14
23128670--23128722	27	2.0	27	100	0	106	49	3	0	47	1.19
23128651--23128853	112	1.8	113	85	3	293	53	2	1	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23132101--23132271	35	5.1	33	74	12	161	23	13	26	36	1.92
23132104--23132279	67	2.6	67	89	3	266	25	13	26	35	1.92
23136397--23136448	24	2.3	23	83	12	63	19	1	1	76	0.97
23136404--23136467	23	2.7	23	83	11	67	20	7	0	71	1.10
23138776--23138812	19	1.9	19	94	0	65	29	32	24	13	1.93
23139317--23139443	60	2.1	60	100	0	254	35	3	18	43	1.66
23142965--23143059	29	3.2	28	75	11	84	31	6	7	54	1.53
23144120--23144203	42	2.0	42	92	0	141	32	17	11	38	1.87
23144469--23144599	29	4.5	28	82	5	163	35	6	10	46	1.65
23147758--23147785	3	9.3	3	100	0	56	32	0	0	67	0.91
23148403--23148429	14	1.9	14	100	0	54	0	29	3	66	1.09
23148474--23148522	11	4.5	11	82	5	55	2	24	0	73	0.94
23148454--23148531	18	4.6	17	75	12	72	1	32	0	66	1.00
23149130--23149175	7	6.3	7	81	18	58	15	0	2	82	0.76
23149134--23149217	6	12.9	7	77	17	58	23	1	1	73	0.97
23149126--23149217	12	7.8	12	73	18	70	22	1	1	75	0.94
23149939--23150216	63	4.6	61	81	6	307	37	17	11	32	1.87
23151145--23151183	11	3.7	10	90	10	60	2	0	10	87	0.65
23152517--23152562	20	2.3	20	96	0	83	28	4	21	45	1.71
23171220--23171268	20	2.5	20	100	0	98	0	0	55	44	0.99
23176626--23176668	3	14.3	3	100	0	86	32	0	0	67	0.91
23177240--23177275	12	2.8	13	87	8	56	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23177242--23177304	14	4.6	14	79	11	60	6	20	0	73	1.05
23177242--23177405	13	13.1	12	66	17	50	4	27	1	67	1.17
23177361--23177405	4	11.2	4	81	9	56	0	28	0	71	0.87
23177977--23178072	7	13.9	7	69	18	58	21	0	1	77	0.84
23177975--23178070	10	8.8	10	73	20	59	21	0	1	77	0.84
23177977--23178072	41	2.3	40	81	18	117	21	0	1	77	0.84
23184688--23184736	2	25.0	2	84	12	57	42	0	4	51	1.21
23219133--23219600	34	13.8	34	69	11	228	36	8	25	29	1.85
23219134--23219318	66	2.8	67	83	4	214	35	8	25	30	1.86
23219421--23219600	33	5.4	33	70	9	123	37	7	23	30	1.83
23219284--23219557	141	1.9	142	82	3	347	35	8	27	28	1.86
23225861--23225924	30	2.1	30	100	0	128	39	18	17	25	1.92
23240823--23240855	10	3.5	10	84	16	52	27	0	0	72	0.85
23254859--23255075	30	7.2	30	94	2	373	14	23	26	35	1.94
23257498--23257531	4	8.5	4	93	0	59	73	0	23	2	0.97
23261683--23261746	19	3.4	19	72	8	67	20	39	17	23	1.92
23261791--23261823	2	17.0	2	93	6	59	51	48	0	0	1.00
23263390--23263443	23	2.3	23	93	0	90	31	38	3	25	1.74
23263461--23263560	43	2.3	43	80	0	110	21	37	18	24	1.94
23265234--23265286	19	2.8	19	97	0	97	35	15	26	22	1.93
23265252--23265294	19	2.3	19	83	0	50	37	13	32	16	1.88
23266902--23267063	43	3.8	43	86	3	193	22	35	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23266902--23267063	86	1.9	86	84	5	220	22	35	17	24	1.96
23288516--23288668	43	3.6	43	85	1	209	22	35	17	23	1.95
23290713--23290796	40	2.1	40	89	6	127	38	22	21	17	1.94
23294031--23294189	63	2.5	63	83	2	203	25	32	17	25	1.97
23307286--23307500	108	2.0	108	97	1	405	26	20	24	28	1.99
23315001--23315056	28	2.0	28	85	3	76	35	23	17	23	1.95
23315261--23315299	11	3.8	11	83	16	57	69	7	23	0	1.14
23315313--23315353	21	1.9	22	90	5	66	51	7	24	17	1.70
23315313--23315357	20	2.2	21	84	11	58	55	6	22	15	1.63
23315311--23315358	21	2.3	20	79	10	60	56	6	22	14	1.61
23316942--23317006	30	2.2	29	81	5	69	29	4	21	44	1.72
23318140--23318164	13	1.9	13	100	0	50	44	0	8	48	1.32
23319364--23319409	15	3.1	15	87	0	65	28	2	13	56	1.48
23324832--23324856	13	1.9	13	100	0	50	44	0	8	48	1.32
23327388--23327615	77	3.0	77	85	6	302	37	13	8	40	1.76
23327325--23327615	154	1.9	145	81	10	345	37	13	8	40	1.76
23336978--23337018	16	2.5	17	84	11	59	63	2	0	34	1.08
23339693--23339774	43	1.9	43	92	0	137	26	17	35	20	1.95
23339694--23339798	43	2.4	43	85	3	131	27	17	36	19	1.94
23341200--23341281	35	2.3	35	89	0	119	26	9	35	28	1.88
23341218--23341308	35	2.6	35	87	0	119	24	13	36	26	1.92
23342601--23342625	9	2.8	9	100	0	50	68	8	24	0	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23344935--23344963	2	14.5	2	100	0	58	48	0	0	51	1.00
23345079--23345224	78	1.9	80	85	2	206	23	17	36	22	1.95
23345079--23345224	40	3.7	40	90	1	206	23	17	36	22	1.95
23364018--23364132	35	3.3	35	86	0	131	22	9	36	31	1.86
23365032--23365059	6	4.7	6	100	0	56	85	0	14	0	0.59
23367525--23367560	2	18.0	2	100	0	72	50	0	0	50	1.00
23368758--23368803	2	23.0	2	90	0	74	50	4	0	45	1.21
23368758--23368801	16	2.8	16	100	0	88	50	4	0	45	1.22
23371445--23371547	38	2.7	38	78	6	109	21	36	17	24	1.94
23380071--23380332	68	3.9	68	80	0	290	35	19	10	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106