genome.fa.s2.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  83  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31548108--31548322	111	2.0	108	90	2	340	52	15	8	23	1.70
31555299--31555416	23	5.2	23	90	3	145	24	12	27	34	1.92
31555318--31555424	23	4.7	23	88	3	146	23	12	28	35	1.91
31555435--31555510	22	3.5	22	77	10	75	47	22	9	21	1.78
31556627--31556755	63	2.0	63	86	0	177	35	10	30	24	1.88
31568515--31568540	2	13.0	2	100	0	52	50	0	0	50	1.00
31574478--31574506	2	14.5	2	100	0	58	51	0	0	48	1.00
31574411--31574603	97	2.0	96	96	1	359	40	13	6	38	1.71
31592861--31592893	17	2.0	16	94	5	57	57	0	6	36	1.23
31598280--31598325	23	2.0	24	83	8	60	71	8	2	17	1.21
31599817--31600287	234	2.0	233	90	1	746	27	15	11	46	1.79
31603221--31603317	2	48.0	2	95	2	176	49	0	1	48	1.08
31609175--31609206	2	16.0	2	100	0	64	50	0	0	50	1.00
31611896--31611926	16	1.9	16	100	0	62	32	19	16	32	1.94
31611932--31612001	35	2.0	35	91	0	113	38	4	28	28	1.76
31616748--31616817	35	2.0	35	88	0	104	40	4	27	28	1.75
31618819--31618853	17	2.0	18	88	5	54	25	0	28	45	1.54
31618931--31618967	16	2.3	16	90	0	56	48	5	16	29	1.68
31624155--31624190	13	2.4	16	86	13	51	33	11	5	50	1.61
31630242--31630268	12	2.2	12	100	0	54	0	51	0	48	1.00
31630358--31630404	23	2.0	24	83	8	60	2	31	6	59	1.34
31634619--31634649	6	5.2	6	100	0	62	16	0	48	35	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31635230--31635278	22	2.2	23	81	3	55	34	2	2	61	1.19
31635739--31635802	33	1.9	33	90	0	101	29	1	0	68	0.99
31635749--31635803	20	2.8	18	76	15	56	27	1	0	70	0.97
31636823--31636881	30	2.0	30	89	0	91	47	15	11	25	1.79
31637484--31637553	36	1.9	36	88	5	106	35	20	10	34	1.86
31656422--31656498	23	3.3	23	68	13	75	12	27	15	44	1.83
31656416--31656521	48	2.2	48	91	0	167	15	27	12	45	1.81
31657199--31657244	23	2.0	23	86	0	65	39	2	0	58	1.10
31657204--31657244	17	2.3	19	87	8	59	39	0	0	60	0.96
31657441--31657486	24	1.9	24	86	0	65	56	4	2	36	1.31
31661492--31661552	33	1.9	31	86	6	86	68	8	6	16	1.35
31674455--31674637	36	5.1	36	82	2	226	36	3	13	46	1.62
31674455--31674640	71	2.6	71	86	2	248	36	3	13	46	1.61
31674458--31674640	35	5.2	35	83	1	222	36	3	13	46	1.62
31684157--31684206	17	2.9	17	82	8	57	60	12	2	26	1.43
31685107--31685203	36	2.7	36	90	0	149	24	32	14	27	1.94
31688988--31689027	19	2.0	20	95	4	73	42	27	0	30	1.56
31689656--31689692	16	2.2	18	85	9	51	48	5	2	43	1.40
31689729--31689771	19	2.2	20	80	12	54	55	0	4	39	1.20
31689674--31689779	43	2.4	43	80	14	119	51	0	4	42	1.29
31689790--31689840	24	2.2	24	82	3	59	52	1	5	39	1.37
31689805--31689850	24	1.9	24	82	8	58	56	2	4	36	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31690305--31690344	12	3.4	12	82	6	55	62	0	37	0	0.95
31694675--31694703	2	14.5	2	100	0	58	48	0	0	51	1.00
31696046--31696085	15	2.7	15	100	0	80	27	12	17	42	1.85
31699201--31699232	15	2.1	15	100	0	64	34	12	0	53	1.39
31700078--31700141	32	2.0	32	100	0	128	56	15	12	15	1.68
31718870--31718912	17	2.7	15	79	10	50	25	2	11	60	1.43
31718895--31718937	20	2.2	20	83	8	52	23	2	9	65	1.34
31726461--31726501	20	2.0	22	86	13	61	24	0	9	65	1.22
31735580--31735748	60	2.8	60	84	3	203	24	18	30	25	1.98
31739881--31740077	73	2.7	73	82	1	225	47	13	17	21	1.82
31740469--31740639	31	5.5	31	71	8	123	35	14	18	30	1.91
31740472--31740639	62	2.7	62	78	9	189	36	14	18	30	1.91
31748769--31748810	22	1.9	22	90	0	66	28	4	21	45	1.72
31748769--31748817	22	2.2	22	85	0	62	26	8	22	42	1.81
31748828--31748894	22	3.1	22	80	4	82	22	8	23	44	1.81
31748828--31748882	21	2.6	21	82	2	74	20	9	25	45	1.80
31748909--31749098	23	8.3	23	87	1	249	34	26	12	25	1.92
31748909--31749074	69	2.4	69	97	0	314	35	25	12	26	1.92
31749040--31749186	22	6.6	22	77	9	122	36	29	13	20	1.91
31748923--31749186	23	11.7	22	81	6	123	36	27	12	23	1.91
31749040--31749186	45	3.3	44	79	6	163	36	29	13	20	1.91
31749063--31749191	43	3.0	43	80	4	152	38	29	13	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31749330--31749366	10	3.6	10	88	3	56	59	18	0	21	1.38
31755244--31755273	15	2.0	15	93	0	51	30	20	23	26	1.98
31755221--31755294	36	2.1	36	89	0	112	27	14	25	32	1.95
31755280--31755375	26	3.7	26	92	0	147	25	13	23	37	1.92
31755303--31755432	26	5.4	23	79	14	115	27	11	25	35	1.90
31755473--31755521	21	2.3	22	78	7	55	48	18	10	22	1.77
31755917--31756048	65	2.0	65	94	0	228	32	27	16	23	1.96
31763982--31764025	8	5.5	8	83	5	54	75	0	0	25	0.81
31764054--31764092	10	3.7	10	86	10	51	69	0	2	28	1.02
31764054--31764091	11	3.5	11	85	7	51	71	0	2	26	1.00
31766023--31766056	17	1.9	18	88	5	52	32	8	5	52	1.56
31766983--31767117	47	2.9	46	82	7	148	37	0	14	47	1.49
31769362--31769427	33	2.0	33	87	0	96	16	25	19	37	1.93
31792126--31792167	21	2.0	21	85	0	57	42	7	11	38	1.69
31792911--31793018	31	3.5	30	67	22	80	36	9	0	53	1.39
31793088--31793206	58	2.1	58	91	0	193	31	32	9	26	1.88
31798922--31798962	21	2.0	21	90	0	64	24	26	17	31	1.97
31799004--31799456	251	1.8	252	84	1	631	29	17	19	33	1.95
31799499--31799546	22	2.2	21	77	3	51	27	25	18	29	1.98
31799812--31799918	38	2.7	40	85	4	146	21	38	17	22	1.93
31807135--31807161	2	13.5	2	100	0	54	51	0	0	48	1.00
31813171--31813275	54	2.0	53	81	5	122	39	15	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31813248--31813426	57	3.1	57	79	7	202	32	11	14	40	1.82
31816199--31816322	36	3.5	35	82	10	146	26	35	14	23	1.93
31822453--31822558	40	2.7	40	80	11	130	21	15	38	24	1.92
31827129--31827247	43	2.8	43	89	2	177	21	21	37	19	1.94
31827139--31827260	43	2.8	43	88	2	174	22	18	39	18	1.92
31827246--31827308	20	3.2	20	90	2	101	25	3	41	30	1.71
31833553--31833592	19	2.2	18	86	13	55	42	0	0	57	0.98
31836049--31836093	17	2.5	19	89	7	67	42	0	2	55	1.12
31836211--31836251	2	20.5	2	84	0	55	41	2	4	51	1.36
31836377--31836402	2	13.0	2	100	0	52	50	0	0	50	1.00
31838034--31838078	23	2.0	23	86	0	63	68	4	8	17	1.32
31844291--31844412	62	2.0	62	95	4	212	61	0	12	25	1.31
31844373--31844397	2	12.5	2	100	0	50	52	0	0	48	1.00
31846291--31846355	25	2.7	24	85	4	78	41	7	1	49	1.41
31846229--31846412	83	2.1	86	81	5	221	38	10	1	50	1.45
31847858--31847907	16	3.2	16	75	13	59	56	0	42	2	1.11
31847939--31848001	13	5.2	12	76	16	60	79	0	17	3	0.86
31848261--31848356	33	2.8	31	73	20	77	69	2	5	22	1.19
31848300--31848344	20	2.3	19	81	11	54	66	4	2	26	1.22
31850635--31850768	60	2.2	60	81	2	162	34	22	20	23	1.97
31851122--31851244	43	2.9	43	83	0	147	20	36	18	24	1.95
31852955--31853101	2	74.5	2	79	10	124	46	3	4	44	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31864564--31864672	43	2.5	43	85	2	139	20	36	18	24	1.94
31864704--31864750	2	23.5	2	100	0	94	51	0	0	48	1.00
31868225--31868257	14	2.4	14	90	5	50	36	24	24	15	1.93
31869638--31869676	18	2.2	18	100	0	78	53	5	15	25	1.62
31881569--31881606	19	2.0	19	100	0	76	42	31	0	26	1.56
31883045--31883251	84	2.4	85	76	7	197	22	30	18	28	1.98
31883040--31883250	42	5.0	42	75	10	169	22	30	18	27	1.97
31884405--31884437	10	3.3	10	88	12	50	21	0	0	78	0.75
31884394--31884435	14	2.9	14	92	3	66	23	0	0	76	0.79
31884502--31884773	92	3.0	91	82	2	314	38	28	9	22	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106