genome.fa.s2.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  58  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21817306--21817851	171	3.2	168	84	4	673	38	14	13	33	1.86
21817906--21818027	37	3.1	37	70	22	113	23	13	37	25	1.91
21817864--21818052	81	2.3	81	90	0	306	24	14	37	23	1.92
21823432--21823578	42	3.5	43	80	4	165	24	18	32	24	1.97
21823432--21823592	43	3.8	44	81	5	170	24	19	31	24	1.98
21823625--21823681	26	2.2	26	93	0	96	28	3	36	31	1.74
21826883--21827026	37	3.9	37	88	3	202	26	32	11	29	1.91
21844341--21846009	171	9.8	171	82	3	1819	38	13	14	33	1.85
21844341--21846009	341	4.9	339	82	3	1857	38	13	14	33	1.85
21844318--21846008	852	2.0	852	84	3	2226	38	13	14	33	1.86
21851516--21851634	37	3.2	37	85	4	177	29	7	36	26	1.84
21851702--21851740	2	19.5	2	94	0	69	0	2	48	48	1.15
21854994--21855144	28	5.6	28	89	5	215	15	19	13	51	1.76
21855130--21855174	5	8.8	5	83	13	56	4	15	0	80	0.87
21855129--21855174	16	2.9	16	84	12	60	4	15	0	80	0.86
21855136--21855185	15	3.3	15	83	13	50	2	22	0	76	0.89
21855198--21855244	22	2.1	22	88	7	69	10	42	8	38	1.70
21855381--21855501	23	5.2	23	86	4	170	32	26	8	33	1.86
21855377--21855502	47	2.7	47	92	0	207	31	26	9	32	1.88
21859321--21859389	22	3.0	22	77	12	68	0	30	0	69	0.89
21859319--21859387	28	2.4	28	75	4	75	0	28	0	71	0.87
21859677--21859753	36	2.1	36	85	0	100	32	33	11	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21859966--21860105	47	3.0	47	88	1	210	10	34	9	46	1.69
21860185--21860237	8	4.9	11	76	23	51	28	0	0	71	0.86
21860184--21860238	24	2.3	23	87	9	83	27	0	0	72	0.85
21860595--21860642	19	2.6	19	86	3	71	39	2	0	58	1.10
21863273--21863385	42	2.7	42	86	2	156	22	29	21	27	1.99
21868427--21868467	2	20.5	2	100	0	82	51	0	48	0	1.00
21869088--21869223	43	3.2	43	82	2	166	27	15	33	24	1.95
21872061--21872123	32	2.0	32	83	0	81	36	4	12	46	1.63
21872803--21872874	2	35.0	2	83	5	90	45	4	2	45	1.37
21873731--21873815	36	2.4	36	84	4	100	22	38	18	20	1.93
21880959--21881064	35	3.1	34	78	4	122	30	34	8	26	1.86
21895373--21895431	26	2.3	26	79	5	66	1	28	3	66	1.18
21917521--21917612	43	2.1	43	95	0	166	26	16	32	25	1.96
21925548--21925577	14	2.2	14	94	5	53	36	23	23	16	1.94
21926186--21926432	35	7.1	35	81	5	239	36	8	13	41	1.75
21932744--21932971	35	6.5	35	86	2	294	34	7	13	43	1.73
21932744--21932971	107	2.2	106	88	1	332	34	7	13	43	1.73
21934906--21934934	2	14.5	2	100	0	58	48	0	0	51	1.00
21935568--21935656	43	2.1	43	97	0	169	30	19	23	26	1.98
21942748--21942776	2	14.5	2	100	0	58	48	0	0	51	1.00
21947554--21947613	30	2.0	30	83	3	77	43	21	5	30	1.74
21949838--21949948	43	2.6	44	83	8	122	26	18	33	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21956673--21956711	11	3.7	11	80	13	55	0	33	0	66	0.92
21960290--21960427	39	3.6	39	83	8	151	26	35	13	25	1.92
21961569--21961601	7	4.4	8	85	14	52	0	33	0	66	0.92
21961569--21961601	15	2.2	15	89	10	50	0	33	0	66	0.92
21963781--21963866	2	42.0	2	81	13	70	41	9	0	47	1.35
21973821--21973920	38	2.6	39	90	1	157	24	35	15	26	1.94
21978864--21978890	10	2.7	10	100	0	54	62	11	0	25	1.28
21978931--21979110	43	4.2	43	90	2	265	21	34	17	26	1.96
21981903--21981961	26	2.3	26	79	5	66	1	28	3	66	1.18
21982922--21982962	19	2.2	20	82	13	59	51	0	2	46	1.14
21983300--21983349	20	2.6	20	78	6	50	66	4	4	26	1.27
21983772--21983849	35	2.2	35	90	0	120	24	11	25	38	1.89
21983878--21983983	34	3.1	34	82	5	124	25	10	32	32	1.89
21984150--21984208	5	11.2	5	89	5	73	74	0	23	1	0.91
22000197--22000221	13	1.9	13	100	0	50	48	8	0	44	1.32
22001046--22001109	23	2.7	23	79	13	60	45	23	0	31	1.53
22007169--22007200	13	2.4	14	94	5	57	53	6	0	40	1.26
22007182--22007334	35	4.4	35	80	3	177	43	11	6	38	1.67
22007177--22007347	70	2.5	67	77	11	182	43	12	6	37	1.68
22009608--22009711	54	1.9	54	88	0	154	27	37	13	21	1.91
22015108--22015270	43	3.8	43	89	3	213	24	17	32	25	1.97
22020531--22020688	79	2.0	79	92	0	262	32	22	6	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22024184--22024212	2	14.5	2	100	0	58	51	0	0	48	1.00
22024250--22024276	2	13.5	2	100	0	54	51	0	0	48	1.00
22025647--22025694	21	2.2	21	78	10	53	56	8	20	14	1.64
22027231--22027315	36	2.4	36	90	2	127	25	36	15	22	1.93
22031210--22031311	40	2.6	38	86	6	134	24	40	14	20	1.90
22031210--22031315	38	2.7	39	86	5	144	25	40	14	19	1.89
22036150--22036187	20	1.9	20	94	0	67	34	18	10	36	1.85
22040750--22040847	47	2.1	48	84	1	126	44	7	43	4	1.50
22041616--22041797	60	3.0	60	81	7	226	26	17	32	22	1.96
22045107--22045148	21	2.0	21	90	0	66	21	26	16	35	1.94
22045526--22045635	42	2.6	43	83	11	138	20	37	20	21	1.95
22045513--22045635	43	2.9	44	82	11	141	21	38	18	21	1.94
22049667--22049750	42	2.0	42	95	0	150	20	22	34	22	1.97
22050038--22050081	22	2.0	22	91	4	72	29	27	20	22	1.99
22057593--22058019	204	2.1	204	89	1	651	25	28	22	24	1.99
22059290--22059386	40	2.5	38	83	11	108	20	39	17	22	1.93
22064087--22064358	75	3.6	75	86	0	382	36	20	17	25	1.94
22085676--22085717	20	2.2	19	84	16	52	30	2	26	40	1.69
22085712--22085793	37	2.2	37	93	0	137	30	9	31	28	1.89
22085914--22085942	11	2.6	11	100	0	58	27	31	10	31	1.90
22093876--22093995	56	2.1	56	83	8	147	38	9	27	25	1.86
22100878--22100986	43	2.5	43	80	5	114	29	19	32	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22100994--22101053	3	20.7	3	76	19	56	25	1	38	35	1.66
22100996--22101055	23	2.6	23	91	0	93	25	1	40	33	1.66
22101894--22101953	3	20.7	3	76	19	56	25	1	38	35	1.66
22101896--22101955	23	2.6	23	91	0	93	25	1	40	33	1.66
22102679--22102787	43	2.5	43	79	5	105	26	18	33	21	1.96
22102795--22102854	3	20.7	3	76	19	56	25	1	38	35	1.66
22102797--22102856	23	2.6	23	91	0	93	25	1	40	33	1.66
22100455--22104955	901	5.0	901	96	0	8268	29	12	25	32	1.93
22103570--22103688	43	2.8	43	83	5	143	24	20	34	21	1.96
22103696--22103755	3	20.7	3	76	19	56	25	1	38	35	1.66
22103698--22103757	23	2.6	23	91	0	93	25	1	40	33	1.66
22104471--22104589	43	2.8	43	83	5	143	24	20	34	21	1.96
22104597--22104656	3	20.7	3	76	19	56	25	1	36	36	1.66
22104597--22104656	8	7.2	8	75	17	52	25	1	36	36	1.66
22104599--22104658	23	2.6	23	91	0	93	25	1	38	35	1.66
22121306--22121437	43	3.1	43	82	4	133	25	18	34	20	1.96
22121432--22121514	3	28.7	3	74	20	70	25	2	38	33	1.69
22121437--22121511	20	3.5	20	75	19	69	25	2	38	33	1.70
22121434--22121516	23	3.6	23	95	0	139	25	2	39	32	1.69
22131712--22131752	21	1.9	22	90	5	66	17	24	7	51	1.70
22134542--22134588	24	2.0	24	88	8	71	63	4	0	31	1.13
22134540--22134592	28	1.9	27	92	3	88	64	3	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22157146--22157220	2	37.5	2	94	0	132	50	2	0	46	1.15
22158245--22158303	31	1.9	31	86	6	84	1	16	5	76	1.05
22159947--22159997	22	2.3	23	83	12	70	70	1	17	9	1.24
22162421--22162748	161	2.0	162	97	1	622	46	15	14	23	1.84
22164779--22164839	30	1.9	30	83	9	77	54	9	8	27	1.62
22167247--22167567	160	2.0	160	88	2	484	37	18	14	28	1.91
22170418--22170465	22	2.2	22	85	3	62	50	8	18	22	1.74
22172313--22172504	72	2.7	72	80	8	196	42	17	20	20	1.90
22174359--22174391	17	1.9	17	88	11	50	42	15	3	39	1.62
22174554--22174706	28	5.3	28	78	13	132	36	11	9	43	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106