genome.fa.s2.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  85  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32419084--32419109	8	3.2	8	100	0	52	11	11	38	38	1.78
32419979--32420011	2	16.5	2	93	0	57	51	45	0	3	1.16
32421935--32421988	27	2.0	27	92	7	92	53	1	0	44	1.11
32421938--32422017	22	3.3	23	82	10	81	50	2	0	47	1.14
32422059--32422159	19	5.2	19	75	15	91	42	0	1	54	1.18
32422059--32422148	20	4.6	19	80	13	76	43	1	2	53	1.20
32422051--32422170	40	2.8	45	76	18	137	44	0	1	53	1.16
32422079--32422157	20	3.9	21	76	12	76	41	1	2	54	1.22
32422062--32422174	20	5.6	19	72	19	61	42	0	1	54	1.16
32422041--32422195	86	1.9	84	82	15	200	40	1	1	56	1.18
32423832--32423867	3	12.0	3	100	0	72	66	0	0	33	0.92
32432550--32432590	21	1.9	22	90	5	66	4	34	31	29	1.79
32436148--32436173	2	13.0	2	100	0	52	50	0	0	50	1.00
32437376--32437403	1	28.0	1	100	0	56	0	0	0	100	0.00
32441566--32441590	13	1.9	13	100	0	50	48	8	0	44	1.32
32442835--32442871	19	1.9	19	100	0	74	37	32	2	27	1.71
32450266--32450313	25	1.9	25	87	8	71	75	2	4	18	1.07
32452039--32452080	18	2.3	19	83	4	50	76	2	2	19	1.01
32452225--32452289	14	4.5	14	74	18	62	72	0	3	24	0.99
32452225--32452289	28	2.2	29	84	15	82	72	0	3	24	0.99
32452229--32452283	7	7.7	7	82	13	60	70	0	1	27	0.97
32452378--32452461	21	4.2	20	75	15	61	70	0	7	22	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32452378--32452464	27	3.2	27	79	11	81	70	0	6	22	1.11
32452425--32452472	5	9.4	5	78	13	53	75	0	0	25	0.81
32452402--32452479	10	7.1	11	73	16	56	69	0	6	24	1.12
32452421--32452486	25	2.6	24	73	17	62	71	0	3	25	1.01
32464336--32464700	37	9.6	37	78	5	336	22	13	18	45	1.85
32464355--32464700	74	4.6	74	79	6	372	21	13	19	45	1.85
32464858--32464898	21	1.9	22	95	5	75	73	4	2	19	1.13
32465578--32465643	2	33.0	2	84	6	89	50	3	45	0	1.17
32466260--32466305	3	15.0	3	82	17	51	69	0	2	28	1.00
32466262--32466303	7	6.1	7	83	5	59	71	0	2	26	0.98
32466253--32466305	27	2.0	26	92	3	88	69	0	1	28	0.99
32466260--32466305	10	4.9	10	80	20	55	69	0	2	28	1.00
32470619--32470661	22	2.0	22	81	9	52	44	2	0	53	1.13
32470939--32470980	22	1.9	22	90	0	66	52	7	9	30	1.61
32471623--32471753	63	2.1	64	82	1	156	54	3	11	30	1.54
32473255--32473299	22	2.1	23	84	12	60	60	8	2	28	1.39
32473715--32473766	19	2.7	19	85	5	61	71	3	0	25	1.03
32474672--32474725	21	2.6	21	88	5	74	20	29	46	3	1.68
32476077--32476111	18	1.9	18	94	0	61	42	5	8	42	1.59
32475907--32476137	127	1.8	127	86	0	336	35	12	10	41	1.77
32478917--32478987	31	2.4	31	80	4	92	40	14	7	38	1.73
32478940--32479178	66	3.2	74	78	11	183	35	17	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32479060--32479243	66	2.8	66	92	3	300	32	20	14	32	1.93
32479169--32479211	21	2.0	21	95	0	77	37	27	13	20	1.91
32479206--32479268	24	2.6	24	89	0	90	25	15	19	39	1.91
32491993--32492140	78	1.9	78	85	2	208	29	15	22	32	1.95
32496766--32496944	60	3.0	59	86	4	234	21	32	19	26	1.97
32497698--32497738	21	2.0	21	85	9	57	0	26	0	73	0.84
32497702--32497738	13	2.9	14	84	15	53	0	24	0	75	0.80
32497722--32497822	35	2.9	36	80	7	109	6	35	4	52	1.50
32497717--32497869	34	4.5	34	78	3	137	5	36	6	51	1.50
32497854--32497897	21	2.1	21	82	0	52	0	38	0	61	0.96
32522528--32522564	2	18.5	2	100	0	74	51	0	0	48	1.00
32523244--32523341	49	2.0	49	95	0	178	29	15	25	29	1.96
32530119--32530211	46	2.0	46	95	0	168	30	10	37	21	1.87
32539670--32539711	14	2.8	15	82	10	50	59	0	0	40	0.97
32542582--32542607	3	8.7	3	100	0	52	69	0	0	30	0.89
32543847--32543894	17	2.8	17	78	12	53	81	2	8	8	0.96
32543920--32543949	5	6.0	5	100	0	60	0	60	0	40	0.97
32557038--32557067	12	2.5	12	100	0	60	36	16	16	30	1.91
32560673--32560796	63	2.0	63	86	0	176	20	32	13	33	1.91
32561148--32561375	31	7.4	31	87	0	294	25	17	17	38	1.92
32561200--32561250	16	3.2	16	66	5	50	31	13	15	39	1.87
32561214--32561265	15	3.4	15	68	5	50	32	15	11	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32571126--32571883	118	6.4	118	83	2	869	22	19	27	30	1.98
32575533--32575822	31	9.4	31	88	0	375	37	21	17	23	1.94
32576249--32576273	7	3.6	7	100	0	50	44	0	44	12	1.41
32576512--32576620	47	2.3	47	88	0	164	20	27	23	28	1.99
32576568--32576771	58	3.5	58	83	2	178	25	32	17	25	1.97
32576627--32576771	57	2.5	58	84	2	184	27	34	13	24	1.93
32576745--32576794	23	2.2	23	85	0	64	26	36	12	26	1.91
32577123--32577149	14	1.9	14	100	0	54	40	14	29	14	1.86
32578298--32578375	36	2.2	36	97	0	147	33	20	15	30	1.94
32578969--32579032	30	2.1	30	97	0	119	21	18	9	50	1.75
32587993--32588055	22	2.9	23	83	4	60	47	1	1	49	1.20
32588002--32588061	22	2.7	22	86	2	84	46	1	3	48	1.28
32588219--32588246	13	2.2	13	100	0	56	71	0	0	28	0.86
32588349--32588402	28	2.0	27	82	10	65	51	9	3	35	1.52
32590786--32590845	29	2.1	29	96	0	111	45	10	18	26	1.81
32591261--32591319	20	2.8	21	79	7	66	47	1	0	50	1.11
32591251--32591615	74	4.9	75	73	12	269	51	3	2	43	1.31
32591574--32591644	31	2.3	29	75	15	72	57	1	1	39	1.16
32607068--32607110	21	2.0	22	90	4	70	69	0	9	20	1.15
32607310--32607341	15	2.1	15	94	0	55	81	0	0	18	0.70
32607561--32607624	21	3.2	19	82	15	67	76	0	1	21	0.87
32607560--32607624	6	10.5	6	77	12	69	76	0	1	21	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32608995--32609081	32	2.7	31	81	15	90	71	1	4	22	1.11
32611788--32611813	2	13.0	2	100	0	52	50	0	0	50	1.00
32612745--32612784	14	2.8	14	84	3	53	25	0	7	67	1.16
32613444--32613469	13	2.0	13	100	0	52	23	7	15	53	1.67
32613962--32614017	26	2.1	27	93	3	96	28	3	10	57	1.49
32616972--32617009	20	2.0	20	89	5	60	42	15	0	42	1.47
32619025--32619307	95	3.0	95	92	1	469	26	24	14	34	1.94
32622653--32622756	38	2.7	40	80	6	122	22	39	16	22	1.92
32622688--32622748	19	3.2	19	65	9	52	21	42	14	21	1.88
32622866--32622914	2	25.0	2	95	4	91	51	48	0	0	1.00
32627894--32627930	15	2.5	15	90	0	56	43	27	0	29	1.55
32628858--32628927	30	2.3	30	90	4	106	27	22	30	20	1.98
32629215--32629254	2	20.0	2	100	0	80	50	0	0	50	1.00
32629619--32629827	107	1.9	108	90	0	330	34	16	4	43	1.69
32630320--32630686	195	1.9	197	89	2	569	41	6	7	44	1.59
32631263--32631327	24	2.6	27	76	14	75	64	0	7	27	1.20
32632597--32632622	6	4.3	6	100	0	52	84	0	0	15	0.62
32632550--32632685	27	5.1	27	70	15	86	66	0	2	29	1.11
32635316--32635362	25	2.0	23	87	8	67	74	0	14	10	1.07
32638172--32638209	2	20.5	2	84	15	55	50	0	0	50	1.00
32638172--32638231	31	1.9	31	83	12	79	50	1	1	46	1.21
32640816--32640864	18	2.6	19	83	9	64	48	2	8	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32642321--32642584	31	8.5	31	86	1	368	25	16	18	40	1.90
32642758--32642830	36	2.0	36	91	0	119	17	5	35	41	1.73
32646389--32646512	56	2.2	56	89	0	194	21	26	24	27	1.99
32646441--32646896	118	3.9	118	84	0	574	23	19	28	28	1.99
32649048--32649313	145	1.8	145	81	0	334	28	19	19	32	1.96
32650680--32651063	31	12.4	31	86	1	520	39	19	16	25	1.91
32651752--32651804	23	2.3	24	83	9	74	24	32	16	26	1.97
32651798--32651979	58	3.1	57	84	3	229	28	32	15	24	1.95
32651950--32652002	23	2.3	23	87	6	72	28	33	9	28	1.88
32673457--32673500	3	14.7	3	95	0	79	65	2	0	31	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106