genome.fa.s2.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  78  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29703173--29703201	15	1.9	15	100	0	58	55	20	10	13	1.68
29707669--29707724	22	2.5	23	78	21	66	42	33	7	16	1.75
29708868--29708947	40	2.0	40	87	0	115	36	25	12	26	1.91
29711305--29711366	26	2.4	26	83	5	81	35	12	20	30	1.91
29716794--29716926	66	2.0	67	89	4	207	27	23	17	31	1.97
29722924--29722984	30	2.0	31	93	3	106	31	3	8	57	1.44
29723230--29723295	28	2.4	27	79	2	69	62	0	0	37	0.96
29723283--29723343	22	2.7	23	82	7	79	52	1	3	42	1.27
29747108--29747136	3	9.7	3	100	0	58	34	0	0	65	0.93
29747863--29747893	6	5.2	6	100	0	62	16	48	16	19	1.81
29752786--29752811	8	3.2	8	100	0	52	76	0	11	11	1.01
29753118--29753279	34	4.7	34	85	6	177	16	16	42	24	1.88
29754091--29754120	10	3.0	10	95	0	51	66	0	3	30	1.07
29754418--29754447	13	2.3	13	100	0	60	53	6	6	33	1.53
29754446--29754483	18	2.1	18	90	9	60	68	0	5	26	1.11
29754538--29754568	4	8.0	4	92	7	55	74	0	0	25	0.82
29754723--29754781	30	2.0	30	87	12	88	72	0	1	25	0.93
29754740--29754781	15	2.8	15	79	13	59	71	0	2	26	0.98
29754739--29754781	16	2.8	16	77	22	56	72	0	2	25	0.97
29754913--29754942	12	2.4	13	94	5	53	66	0	3	30	1.07
29754920--29754974	19	2.8	20	78	10	60	67	0	3	29	1.08
29758555--29758697	72	2.0	72	97	0	268	38	11	13	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29761339--29761379	21	2.0	21	90	0	64	73	0	0	26	0.84
29761403--29761442	3	13.3	3	84	10	55	67	2	0	30	1.04
29764494--29764575	22	3.7	22	98	0	155	53	0	0	46	1.00
29764494--29764572	10	7.3	10	83	14	95	53	0	0	46	1.00
29764626--29764664	17	2.2	18	86	4	53	46	15	12	25	1.81
29769734--29769774	20	2.2	19	86	8	57	26	2	0	70	0.99
29782311--29782414	28	3.8	28	79	6	86	26	21	18	33	1.96
29782396--29782463	27	2.5	27	81	9	93	23	19	23	33	1.97
29782509--29782546	16	2.3	17	86	4	51	23	34	15	26	1.95
29782599--29782661	28	2.2	28	85	0	81	30	17	19	33	1.95
29782701--29782764	27	2.4	27	78	0	74	26	21	15	35	1.94
29786948--29786990	21	2.1	20	91	4	68	18	16	32	32	1.93
29787027--29787096	22	3.2	22	91	0	104	17	10	20	52	1.72
29787027--29787113	22	3.9	22	86	4	95	18	9	24	48	1.77
29787057--29787128	22	3.2	23	78	3	58	20	11	27	40	1.87
29789096--29789256	50	3.0	54	84	10	224	50	3	17	27	1.63
29789238--29789268	15	2.0	16	93	6	55	45	0	9	45	1.36
29790324--29790454	68	1.9	68	90	0	208	38	7	21	32	1.82
29790324--29790471	68	2.2	68	86	2	181	37	7	22	32	1.82
29791576--29791610	2	17.5	2	93	0	61	48	0	2	48	1.16
29796838--29796882	21	2.1	21	88	8	65	64	4	6	24	1.37
29800790--29800876	43	2.0	43	86	0	120	24	34	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29805818--29805861	21	2.1	21	87	8	63	65	4	6	22	1.35
29805817--29805860	11	4.1	11	82	2	54	63	4	6	25	1.38
29809433--29809466	15	2.2	16	89	5	52	41	2	8	47	1.50
29827682--29827729	21	2.3	20	79	10	60	14	22	6	56	1.61
29827687--29827727	21	1.9	22	90	5	66	17	24	7	51	1.70
29827739--29827774	11	3.4	11	88	7	56	0	22	11	66	1.22
29829699--29829732	14	2.7	12	90	9	50	61	20	0	17	1.34
29829699--29829732	6	5.3	6	86	13	50	61	20	0	17	1.34
29837179--29838482	655	2.0	653	97	0	2464	30	18	16	33	1.94
29838438--29838630	73	2.7	73	81	10	218	19	19	18	41	1.90
29841370--29841408	2	19.5	2	100	0	78	48	0	0	51	1.00
29856021--29856082	32	1.9	32	93	0	106	9	24	16	50	1.75
29857241--29857272	2	16.0	2	100	0	64	0	50	0	50	1.00
29865992--29866044	2	26.5	2	96	0	97	50	1	0	47	1.12
29877682--29877786	43	2.4	43	95	3	185	22	19	34	23	1.96
29877884--29877912	2	14.5	2	100	0	58	48	0	0	51	1.00
29883765--29883808	22	2.0	22	86	8	63	40	6	20	31	1.79
29884500--29884706	41	5.1	41	90	3	323	24	13	35	27	1.93
29885999--29886058	18	3.6	17	77	22	65	1	28	0	70	0.97
29886011--29886083	28	2.6	28	86	4	85	1	28	0	69	0.96
29886013--29886077	33	1.9	33	84	9	87	1	27	0	70	0.96
29896996--29897038	18	2.4	18	80	7	52	23	32	0	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29898575--29898859	28	10.0	29	81	7	316	37	11	10	40	1.76
29898575--29898859	85	3.3	84	84	5	324	37	11	10	40	1.76
29898586--29898859	57	4.8	58	82	6	296	39	11	10	38	1.76
29905248--29905414	60	2.8	60	86	1	228	30	23	21	23	1.99
29915535--29915610	32	2.4	32	97	0	143	32	27	17	22	1.96
29915712--29915788	35	2.1	36	83	9	95	51	15	2	29	1.57
29917033--29917101	28	2.4	28	78	7	77	42	11	10	36	1.75
29955395--29955461	35	1.9	35	90	0	107	31	10	32	25	1.89
29955399--29955486	35	2.5	35	79	0	95	29	14	30	25	1.95
29955853--29955892	21	1.9	21	89	0	62	30	20	25	25	1.99
29968476--29968501	3	8.7	3	100	0	52	0	34	0	65	0.93
29974064--29974089	12	2.2	12	100	0	52	34	23	0	42	1.54
29976836--29976879	18	2.4	18	85	7	54	79	2	13	4	0.98
29987906--29987933	2	14.0	2	100	0	56	50	0	0	50	1.00
29988000--29988034	17	2.1	17	100	0	70	28	22	37	11	1.89
29988379--29988422	20	2.2	20	83	0	52	43	13	25	18	1.86
30003706--30003746	20	2.0	20	90	0	64	43	0	12	43	1.41
30004120--30004146	12	2.2	12	100	0	54	37	0	0	62	0.95
30023728--30023768	20	2.0	20	85	0	55	41	0	12	46	1.41
30029165--30029206	20	2.1	20	90	0	66	45	0	11	42	1.41
30030204--30030291	35	2.5	35	83	3	115	27	20	25	27	1.99
30031683--30031722	20	2.0	20	85	5	53	22	2	5	70	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30038615--30038665	9	5.9	9	84	6	70	76	9	1	11	1.10
30038615--30038665	17	2.9	17	88	2	75	76	9	1	11	1.10
30040910--30040955	20	2.2	22	92	7	78	15	6	10	67	1.40
30042230--30042277	20	2.4	20	82	6	53	22	4	6	66	1.32
30045685--30045739	17	3.1	17	78	14	56	65	5	0	29	1.15
30046860--30046917	26	2.2	26	93	0	98	32	39	1	25	1.66
30046929--30047041	43	2.6	43	83	2	147	18	36	19	25	1.95
30047073--30047099	2	13.5	2	100	0	54	51	0	0	48	1.00
30052117--30052144	2	14.0	2	100	0	56	50	0	0	50	1.00
30052181--30052334	42	3.7	42	82	1	193	20	20	37	21	1.95
30052375--30052407	2	16.5	2	100	0	66	51	0	0	48	1.00
30054889--30054926	19	2.0	20	94	5	69	36	15	26	21	1.93
30059068--30059186	43	2.8	43	89	2	177	21	21	37	19	1.94
30059078--30059199	43	2.8	43	88	2	174	22	18	39	18	1.92
30059590--30059629	21	1.9	21	84	0	53	27	25	22	25	2.00
30059553--30059701	60	2.5	60	80	3	165	23	19	22	34	1.96
30061371--30061408	20	1.9	20	94	0	67	28	5	23	42	1.76
30061371--30061416	20	2.3	20	88	0	65	28	4	26	41	1.74
30069985--30070035	15	3.4	14	84	10	66	49	15	3	31	1.63
30074560--30074607	19	2.6	19	86	3	71	54	0	8	37	1.31
30075559--30075612	4	13.5	4	81	11	58	74	0	25	0	0.83
30075559--30075622	18	3.6	17	80	17	76	73	0	26	0	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30075546--30075604	28	2.1	29	84	9	77	69	0	30	0	0.89
30075539--30075606	28	2.4	27	81	11	75	67	0	32	0	0.91
30075539--30075618	32	2.4	34	81	12	94	68	0	31	0	0.90
30078303--30078633	164	2.0	165	95	2	592	39	12	14	33	1.83
30088417--30088519	38	2.6	40	86	3	138	20	13	41	24	1.88
30088459--30088515	19	2.9	19	75	10	60	17	14	47	21	1.82
30090422--30090504	25	3.2	25	64	12	67	25	43	12	19	1.85
30090417--30090575	54	2.9	54	89	0	246	27	38	13	20	1.90
30092851--30093408	279	2.0	276	88	3	816	41	10	11	35	1.77
30114884--30114931	24	1.9	26	87	8	73	41	18	16	22	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106