genome.fa.s2.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  33  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12715784--12715831	24	2.0	24	95	0	87	22	22	12	41	1.88
12722895--12722941	15	3.2	14	85	8	67	53	17	4	25	1.62
12724140--12724164	13	1.9	13	100	0	50	48	8	0	44	1.32
12732964--12733017	2	27.0	2	96	0	99	48	0	1	50	1.11
12734094--12734133	21	1.9	21	89	0	62	40	15	17	27	1.89
12734101--12734147	21	2.2	21	88	0	67	36	14	25	23	1.93
12734468--12734527	23	2.6	23	91	0	93	31	40	1	26	1.66
12734524--12734655	43	3.1	43	85	4	160	21	37	18	22	1.94
12738799--12738839	19	2.1	20	86	4	57	65	2	2	29	1.18
12741770--12741826	28	2.1	27	86	3	78	24	19	19	36	1.94
12743249--12743286	3	12.7	3	88	0	58	31	28	2	36	1.71
12743246--12743283	18	2.1	18	95	0	67	31	26	2	39	1.70
12746084--12746178	42	2.3	42	88	0	145	25	22	29	23	1.99
12749501--12749531	10	3.2	10	95	4	55	83	0	6	9	0.79
12753534--12753558	12	2.1	12	100	0	50	16	32	0	52	1.44
12755522--12755675	42	3.7	42	81	3	175	22	33	21	22	1.98
12755702--12755744	2	21.5	2	100	0	86	51	48	0	0	1.00
12755744--12755796	2	26.5	2	100	0	106	50	0	0	49	1.00
12763607--12763736	42	3.1	42	82	6	147	23	33	18	24	1.97
12776889--12776929	20	2.0	20	85	0	55	48	12	0	39	1.41
12778840--12778881	19	2.2	19	83	8	50	47	7	16	28	1.73
12780868--12780983	43	2.7	43	81	2	117	21	37	19	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12794894--12794931	19	2.0	19	94	0	67	28	0	28	42	1.56
12816620--12816663	2	22.0	2	100	0	88	0	50	0	50	1.00
12819796--12819840	21	2.1	21	83	0	54	13	20	4	62	1.48
12826903--12826965	31	2.0	31	90	6	101	25	17	9	47	1.77
12828012--12828171	63	2.5	63	85	2	205	36	2	24	36	1.69
12828039--12828195	63	2.5	63	87	0	197	33	3	25	37	1.72
12843839--12843907	17	3.8	18	75	19	63	49	0	4	46	1.21
12843710--12844251	117	4.7	115	75	10	462	46	2	8	42	1.48
12844197--12844254	20	2.9	21	78	14	61	50	1	1	46	1.22
12844179--12844251	9	8.2	9	70	19	55	50	1	2	45	1.24
12852575--12852693	37	3.2	37	89	0	175	30	8	36	24	1.85
12860115--12860252	41	3.2	41	71	16	107	37	26	9	26	1.87
12860157--12860335	49	3.7	51	81	10	214	37	22	10	29	1.87
12860109--12860335	98	2.4	93	81	10	241	38	24	9	27	1.87
12862522--12862570	2	24.5	2	100	0	98	48	0	0	51	1.00
12864457--12864620	71	2.3	71	89	2	240	34	9	20	35	1.85
12865258--12865321	34	1.9	33	90	3	101	39	15	26	18	1.91
12866091--12866128	19	2.0	19	94	0	67	28	0	28	42	1.56
12867483--12867517	16	2.2	16	89	0	52	40	2	8	48	1.49
12871586--12871665	28	2.9	28	92	1	117	31	22	15	31	1.94
12882791--12882823	13	2.5	13	90	9	50	84	0	12	3	0.72
12894717--12894746	14	2.1	14	93	0	51	53	10	6	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12895050--12895083	3	11.3	3	100	0	68	64	0	0	35	0.94
12897490--12897586	42	2.3	42	90	0	158	43	19	12	24	1.86
12897589--12897625	9	4.1	9	89	0	56	35	24	10	29	1.89
12901080--12901115	18	2.0	18	94	0	63	44	2	33	19	1.65
12901118--12901196	32	2.5	32	85	0	104	0	15	50	34	1.44
12908214--12908257	20	2.2	20	88	8	63	0	6	11	81	0.86
12918407--12918431	13	1.9	13	100	0	50	72	0	0	28	0.86
12924236--12924310	24	3.3	21	75	22	71	78	4	5	12	1.05
12925934--12926019	30	2.9	30	87	3	120	34	15	16	33	1.90
12928810--12928840	14	2.2	14	94	0	53	51	35	0	12	1.40
12928710--12928916	109	1.9	109	90	0	333	36	29	8	25	1.85
12943433--12943488	26	2.2	26	86	0	76	16	25	19	39	1.91
12947213--12947299	34	2.6	34	87	3	95	24	9	33	33	1.87
12948725--12948770	20	2.3	20	96	0	83	28	4	21	45	1.71
12952382--12952438	28	2.0	28	96	0	105	45	19	10	24	1.81
12957546--12957604	26	2.3	26	79	5	66	1	28	3	66	1.18
12959831--12959873	19	2.3	19	87	0	59	20	23	23	32	1.98
12960377--12960503	43	3.0	43	91	1	193	22	33	18	26	1.96
12962119--12962188	10	6.4	10	72	18	50	25	11	21	41	1.86
12962120--12962186	23	2.9	23	88	4	100	25	11	20	41	1.87
12964568--12964634	34	2.0	34	88	5	100	22	13	25	38	1.90
12964579--12964652	34	2.2	32	81	13	87	27	10	22	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12966459--12966538	41	2.0	41	84	0	106	38	23	17	20	1.93
12966847--12966979	36	3.7	35	79	7	135	27	37	12	22	1.90
12966847--12966980	72	1.9	72	84	9	184	27	37	12	22	1.90
12978242--12978286	21	2.1	21	88	8	65	46	6	33	13	1.69
12978491--12978541	9	5.6	9	76	19	52	25	1	0	72	0.95
12978494--12978541	18	2.6	18	83	12	62	25	2	0	72	0.95
12978490--12978551	13	4.6	13	75	25	58	27	3	0	69	1.04
12978493--12978551	27	2.2	27	79	14	68	27	3	0	69	1.04
12984585--12984756	62	2.8	62	85	1	220	33	19	22	25	1.97
12984892--12984926	2	17.5	2	100	0	70	51	0	0	48	1.00
12985047--12985179	36	3.7	36	89	4	198	25	42	12	18	1.86
12986113--12986152	21	1.9	21	89	0	62	32	2	12	52	1.52
12986336--12986376	21	2.0	21	95	0	73	41	4	39	14	1.67
12986584--12986643	3	19.7	3	77	19	54	31	3	0	65	1.09
12986585--12986643	24	2.4	24	81	18	77	30	3	0	66	1.08
12986584--12986643	28	2.2	27	85	14	79	31	3	0	65	1.09
12988560--12988623	33	1.9	33	90	0	101	42	4	12	40	1.64
12989033--12989229	99	2.0	100	86	2	279	42	12	15	29	1.84
12989317--12989478	86	1.9	86	83	2	209	37	15	14	32	1.88
12997402--12997450	15	3.4	15	73	15	50	75	0	0	24	0.80
12997394--12997446	24	2.1	26	89	6	83	75	0	0	24	0.80
12997394--12997450	16	3.6	16	81	13	64	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12998016--12998041	8	3.2	8	100	0	52	88	0	0	11	0.52
13010252--13010578	37	8.7	37	82	2	348	23	16	19	40	1.91
13010275--13010549	75	3.7	74	80	4	255	23	15	19	41	1.89
13012034--13012078	9	5.3	9	80	20	53	77	0	0	22	0.76
13012034--13012073	15	2.8	15	79	20	50	77	0	0	22	0.77
13012038--13012079	19	2.2	20	87	12	61	78	0	0	21	0.75
13012287--13012413	10	12.0	11	66	20	51	67	3	1	27	1.14
13012282--13012441	17	9.2	17	66	21	73	68	2	2	26	1.14
13012286--13012394	38	3.0	36	77	10	89	68	2	1	26	1.13
13012631--13012682	8	6.2	8	73	8	50	76	0	3	19	0.93
13014545--13014857	28	11.5	28	78	6	277	39	16	10	33	1.83
13014549--13014869	55	5.9	55	80	5	323	38	16	9	34	1.82
13014545--13014857	83	3.8	83	81	5	307	39	16	10	33	1.83
13024751--13024779	15	1.9	15	100	0	58	27	13	24	34	1.93
13033948--13034069	43	2.8	43	82	2	138	26	17	36	20	1.94
13034064--13034120	23	2.5	23	94	0	96	24	3	43	28	1.70
13036984--13037023	16	2.5	15	88	8	53	65	17	0	17	1.28
13039205--13039321	35	3.3	35	86	0	153	23	32	10	33	1.89
13040174--13040212	20	2.0	20	89	0	60	38	7	35	17	1.79
13046345--13046422	35	2.2	35	83	0	102	26	34	7	30	1.85
13047275--13047314	20	2.0	20	90	0	62	40	10	35	15	1.80
13051021--13051086	24	2.4	28	76	21	77	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13051026--13051110	20	4.2	19	70	24	57	38	2	0	58	1.11
13051016--13051209	63	3.1	62	83	10	225	39	4	0	56	1.23
13051151--13051191	18	2.2	19	87	12	59	29	2	0	68	1.03
13051857--13051895	19	2.1	19	85	0	51	53	0	5	41	1.23
13053961--13054011	2	25.5	2	91	0	84	50	3	0	45	1.20
13060006--13060146	53	2.6	54	77	3	158	42	16	12	28	1.85
13060255--13060340	26	3.3	26	72	6	86	39	9	13	37	1.78
13068390--13068460	34	2.1	35	91	2	117	29	14	22	33	1.93
13081057--13081084	13	2.2	13	100	0	56	28	7	7	57	1.52
13088155--13088184	2	15.0	2	92	0	51	46	0	3	50	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106