genome.fa.s2.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  37  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14048325--14048364	21	1.9	21	89	0	62	35	22	7	35	1.82
14050061--14050105	22	2.2	21	88	11	67	48	20	0	31	1.49
14050071--14050125	28	2.0	28	85	7	76	43	25	0	30	1.55
14050118--14050250	42	3.1	42	92	1	212	24	30	18	27	1.97
14059069--14059131	20	3.2	20	90	2	101	30	41	3	25	1.71
14059130--14059275	43	3.4	43	85	5	197	20	35	18	25	1.95
14074282--14074336	13	4.2	13	76	17	51	67	3	5	23	1.28
14074291--14074342	15	3.5	15	75	17	54	73	3	1	21	1.10
14075921--14076049	36	3.7	36	87	5	158	19	13	41	25	1.89
14077847--14077876	10	3.0	10	95	0	51	40	3	10	46	1.54
14080599--14080724	42	3.0	42	88	1	153	25	19	33	22	1.97
14082387--14082428	2	21.0	2	100	0	84	50	0	0	50	1.00
14116778--14116811	17	2.1	17	88	5	52	70	0	0	29	0.87
14117055--14117116	13	4.6	14	70	6	56	40	8	17	33	1.79
14117042--14117103	27	2.3	27	100	0	124	41	9	14	33	1.79
14117082--14117117	14	2.6	15	83	16	51	38	5	19	36	1.75
14117741--14117788	19	2.5	19	96	0	87	18	37	18	25	1.94
14118494--14118547	24	2.3	23	78	9	54	66	25	1	5	1.23
14119121--14119163	19	2.3	19	87	0	59	46	0	0	53	1.00
14121151--14121575	224	1.9	224	86	0	600	35	15	19	30	1.92
14124601--14124787	29	6.4	29	82	7	218	40	11	9	38	1.74
14125756--14125798	2	21.5	2	100	0	86	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14126215--14126298	34	2.5	34	79	12	95	29	11	27	30	1.92
14126215--14126298	35	2.5	33	77	12	91	29	11	27	30	1.92
14126455--14126522	5	13.6	5	86	4	93	77	1	17	2	0.96
14126544--14126614	25	2.8	25	95	0	124	45	11	25	18	1.82
14126514--14126628	25	4.5	24	83	10	106	46	12	26	14	1.80
14131359--14131399	21	2.0	21	95	0	73	34	9	19	36	1.85
14132688--14132792	42	2.5	42	87	1	138	27	17	33	21	1.96
14132819--14132862	2	22.0	2	85	0	61	50	2	2	45	1.27
14134082--14134114	17	1.9	17	88	11	50	48	0	3	48	1.17
14135315--14135394	32	2.5	32	81	0	88	30	30	11	28	1.91
14135844--14135882	21	1.9	20	84	5	51	30	23	10	35	1.88
14136245--14136275	15	2.1	15	93	0	53	25	0	12	61	1.32
14137271--14137308	19	2.0	19	89	0	58	31	0	26	42	1.56
14137489--14137541	28	1.9	27	88	3	79	28	20	26	24	1.99
14138683--14138707	13	1.9	13	100	0	50	44	0	8	48	1.32
14139912--14139952	15	2.7	16	88	7	59	26	2	19	51	1.59
14139908--14139953	15	3.1	15	81	9	58	23	2	17	56	1.52
14143755--14143792	19	2.0	19	94	0	67	28	0	28	42	1.56
14145225--14145249	13	1.9	13	100	0	50	44	0	8	48	1.32
14147831--14147905	34	2.2	34	83	4	89	29	26	12	32	1.92
14148689--14148713	2	12.5	2	100	0	50	52	48	0	0	1.00
14151300--14151549	68	3.7	67	80	4	259	37	10	17	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14151553--14151589	18	2.1	18	94	0	65	35	10	24	29	1.89
14159215--14159283	36	1.9	36	81	0	84	33	13	17	36	1.88
14159839--14159863	13	1.9	13	100	0	50	56	8	20	16	1.65
14168110--14168159	20	2.4	21	90	3	75	0	34	0	66	0.92
14170364--14170482	37	3.2	37	88	4	195	25	36	10	27	1.88
14180300--14180346	10	4.7	10	76	10	51	2	29	0	68	1.02
14180293--14180339	14	3.4	14	78	18	53	2	29	0	68	1.02
14180293--14180346	15	3.7	15	79	16	51	1	29	0	68	1.00
14189329--14189367	14	2.7	15	88	4	53	2	25	2	69	1.14
14191796--14191841	2	23.0	2	100	0	92	50	0	0	50	1.00
14191898--14192057	63	2.5	63	87	2	232	25	34	17	22	1.96
14196470--14196625	74	2.1	73	84	1	195	39	17	21	21	1.92
14198049--14198175	43	3.0	43	94	0	209	23	34	18	23	1.96
14205289--14205340	20	2.6	20	78	0	68	26	5	44	23	1.76
14214342--14214456	37	3.1	37	94	2	196	25	36	10	27	1.89
14215931--14215974	22	2.0	22	90	0	70	50	0	29	20	1.49
14216680--14216723	21	2.0	22	82	4	54	45	11	20	22	1.83
14220521--14220679	62	2.5	63	84	4	214	25	32	17	23	1.97
14228243--14228392	63	2.4	63	85	2	203	27	33	15	24	1.95
14228838--14229002	81	2.0	81	83	1	197	40	30	4	17	1.70
14236868--14236907	2	19.5	2	94	5	71	47	0	2	50	1.14
14243379--14243411	15	2.1	16	88	5	50	24	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14254630--14254688	27	2.1	30	87	9	88	40	20	8	30	1.82
14256545--14256583	20	1.9	20	89	5	60	64	2	2	30	1.21
14257447--14257487	21	1.9	22	95	5	75	53	7	21	17	1.67
14257446--14257493	21	2.2	21	85	3	69	60	6	18	14	1.55
14257681--14257750	35	2.0	35	100	0	140	42	28	8	20	1.81
14271944--14271973	13	2.3	13	94	0	51	46	0	26	26	1.53
14276123--14276170	2	24.0	2	100	0	96	50	0	0	50	1.00
14293627--14293667	21	1.9	21	85	5	55	53	7	21	17	1.67
14295131--14295233	38	2.6	40	86	3	138	23	41	16	18	1.89
14304691--14304752	26	2.4	26	97	0	115	32	41	3	22	1.70
14304759--14305131	42	8.9	42	87	1	523	23	31	21	23	1.98
14304759--14305131	84	4.4	84	90	0	577	23	31	21	23	1.98
14305557--14305675	58	2.1	58	100	0	238	31	28	5	34	1.79
14307701--14307982	61	4.6	61	89	1	413	26	32	17	24	1.96
14307701--14307982	122	2.3	122	91	1	458	26	32	17	24	1.96
14314919--14315086	61	2.8	61	84	1	221	26	30	17	26	1.97
14322751--14322858	56	1.9	56	81	7	130	37	3	12	46	1.60
14323628--14323668	21	1.9	22	85	5	57	51	7	26	14	1.69
14323626--14323673	21	2.3	20	75	10	51	56	6	25	12	1.59
14325930--14325978	25	2.1	24	82	14	59	42	2	6	48	1.39
14326281--14326321	16	2.6	16	92	0	64	56	0	4	39	1.21
14329854--14329896	22	2.0	22	95	0	77	30	9	23	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14337064--14337126	20	3.2	20	90	2	101	30	41	3	25	1.71
14337125--14337243	43	2.8	43	89	2	168	19	37	21	21	1.94
14341454--14341514	23	2.6	23	78	19	63	67	1	31	0	1.01
14341475--14341522	4	12.0	4	79	16	55	70	2	27	0	0.98
14341454--14341533	28	3.0	27	82	12	94	67	1	31	0	0.99
14343012--14343042	16	1.9	16	100	0	62	32	32	12	22	1.92
14351563--14351709	43	3.7	40	74	22	123	25	37	15	21	1.93
14351566--14351717	76	2.0	76	88	2	225	25	36	16	21	1.94
14365313--14365361	19	2.7	18	71	6	53	26	24	18	30	1.98
14365985--14366089	38	2.7	38	83	5	131	23	40	17	19	1.91
14380206--14380250	23	2.0	22	95	0	72	26	37	0	33	1.57
14380952--14381073	42	2.9	41	76	12	115	27	17	31	22	1.96
14380995--14381083	42	2.1	42	82	0	106	28	19	32	20	1.96
14384577--14384824	35	7.4	33	72	15	179	34	24	12	28	1.92
14384591--14384846	67	3.8	67	88	3	336	35	25	12	26	1.92
14384648--14384824	35	5.2	34	77	9	184	33	24	12	28	1.93
14387399--14387439	2	20.5	2	94	0	73	48	0	2	48	1.14
14387441--14387556	42	2.8	42	84	5	137	22	31	22	24	1.99
14394242--14394437	42	4.7	42	76	11	177	23	20	32	23	1.98
14402224--14402329	38	2.7	40	84	8	137	22	38	16	22	1.92
14402444--14402477	2	17.0	2	87	0	50	47	2	2	47	1.32
14403519--14403557	21	2.0	21	85	10	55	2	38	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14403966--14404012	20	2.3	21	89	7	71	0	27	6	65	1.16
14406512--14406653	35	4.1	35	77	7	157	32	27	11	28	1.92
14406477--14406672	102	1.9	102	84	6	263	34	25	13	27	1.93
14421878--14421904	11	2.5	11	100	0	54	0	25	7	66	1.17
14425438--14425504	33	2.0	33	97	0	125	34	10	26	28	1.90
14428111--14428252	73	2.0	72	87	1	203	26	22	19	32	1.97
14434371--14434395	2	12.5	2	100	0	50	48	0	0	52	1.00
14434694--14434786	39	2.3	40	83	1	107	24	20	21	33	1.97
14447681--14447861	94	1.9	93	100	0	353	39	15	11	33	1.82
14469063--14469287	125	1.8	125	89	3	355	25	16	44	13	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106