genome.fa.s2.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  69  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26286876--26287101	81	2.8	81	92	2	373	20	15	38	25	1.92
26286919--26287072	44	3.6	45	69	19	123	22	14	37	25	1.93
26287362--26287527	67	2.5	66	82	5	196	25	23	19	30	1.98
26287599--26287628	16	1.9	16	93	6	53	46	6	20	26	1.75
26288856--26288924	21	3.4	21	88	9	108	46	10	18	24	1.80
26288866--26288924	18	3.1	18	90	7	82	45	10	18	25	1.81
26295396--26295503	35	3.1	35	84	5	137	27	10	37	24	1.87
26295406--26295532	35	3.6	35	82	2	112	27	13	36	22	1.92
26295829--26295868	21	1.9	21	85	10	55	32	10	12	45	1.75
26306727--26306873	42	3.5	42	94	0	240	23	33	23	19	1.97
26307451--26307498	23	2.1	23	84	7	62	35	31	2	31	1.70
26310477--26310549	27	2.7	27	91	0	119	8	28	19	43	1.79
26310676--26310748	36	2.1	35	89	2	110	35	23	10	30	1.89
26314838--26314873	2	18.0	2	88	0	54	44	2	2	50	1.31
26314950--26315067	42	2.8	42	83	5	157	22	33	19	25	1.97
26317895--26317951	28	2.1	28	83	3	71	29	21	19	29	1.97
26319339--26319441	38	2.6	40	84	3	138	21	16	38	23	1.92
26325367--26325399	14	2.4	14	90	5	50	48	6	18	27	1.71
26325703--26325834	42	3.2	42	86	1	185	25	28	21	25	1.99
26331771--26331829	16	3.8	16	78	13	61	72	0	27	0	0.84
26331788--26331829	12	3.5	12	87	9	59	76	0	23	0	0.79
26331772--26331829	6	10.0	6	74	12	50	72	0	27	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26331790--26331829	18	2.2	18	91	8	64	77	0	22	0	0.77
26332864--26332944	37	2.2	37	93	2	135	30	6	32	30	1.82
26332864--26332973	35	3.1	35	87	5	148	28	9	32	30	1.88
26333542--26333569	2	14.0	2	100	0	56	50	0	0	50	1.00
26350008--26350197	67	2.8	68	83	4	224	35	17	11	36	1.85
26353283--26353388	39	2.7	40	85	4	126	26	35	15	22	1.93
26354654--26354920	92	2.9	92	85	0	363	38	27	9	23	1.86
26354981--26355015	18	1.9	18	94	0	61	0	22	5	71	1.07
26354982--26355023	18	2.3	18	87	4	57	0	23	7	69	1.13
26355595--26355657	11	5.7	11	80	0	81	46	0	0	53	1.00
26355588--26355665	33	2.4	33	100	0	156	51	0	0	48	1.00
26355607--26355672	19	3.7	19	67	19	61	46	0	0	53	1.00
26358085--26358186	38	2.6	39	83	7	127	23	37	16	22	1.94
26361950--26362059	43	2.6	43	88	0	148	20	33	18	27	1.96
26384714--26384748	16	2.2	16	90	5	54	2	17	0	80	0.84
26384731--26384788	31	1.9	29	86	6	80	3	25	1	68	1.14
26384973--26385037	34	1.9	34	84	6	87	40	23	7	29	1.82
26402551--26402591	21	1.9	22	90	5	66	51	7	24	17	1.70
26402551--26402595	20	2.2	21	84	11	58	55	6	22	15	1.63
26402549--26402596	21	2.3	20	79	10	60	56	6	22	14	1.61
26404808--26404855	21	2.3	20	79	10	60	14	22	6	56	1.61
26404813--26404853	21	1.9	22	90	5	66	17	24	7	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26409848--26409875	11	2.5	11	100	0	56	53	14	0	32	1.41
26409869--26409912	22	2.0	22	90	0	70	36	25	11	27	1.90
26412176--26412223	21	2.3	20	79	10	60	14	22	6	56	1.61
26412181--26412221	21	1.9	22	90	5	66	17	24	7	51	1.70
26415047--26415084	19	2.0	19	100	0	76	26	0	31	42	1.56
26433588--26433649	25	2.5	25	86	0	88	16	22	14	46	1.83
26433887--26434026	34	4.1	34	82	2	129	37	25	10	26	1.89
26436032--26436086	25	2.2	25	78	15	60	16	25	12	45	1.83
26438727--26438842	41	2.8	42	88	2	162	23	33	20	22	1.97
26440659--26440686	2	14.0	2	100	0	56	50	0	0	50	1.00
26445429--26445552	42	3.0	42	85	2	160	30	20	29	20	1.97
26445616--26445642	2	13.5	2	100	0	54	51	0	0	48	1.00
26460038--26460099	26	2.4	26	94	0	106	32	40	3	24	1.71
26460334--26460457	42	3.0	42	92	0	212	22	33	21	21	1.97
26462636--26462664	10	2.9	10	100	0	58	31	27	0	41	1.56
26473433--26473500	35	1.9	35	90	0	109	17	14	29	38	1.90
26475370--26475527	54	2.9	54	86	1	219	25	42	11	20	1.85
26479370--26479423	21	2.6	22	77	11	60	48	20	5	25	1.71
26479387--26479430	21	2.1	21	91	0	70	40	18	4	36	1.71
26479515--26479602	42	2.1	42	89	0	131	43	21	11	23	1.85
26479515--26479609	21	4.5	21	83	0	118	44	21	12	22	1.85
26482740--26482824	34	2.5	35	86	1	118	36	30	9	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26482810--26482920	34	3.3	34	88	0	168	35	32	12	19	1.90
26498804--26498849	20	2.3	20	92	0	74	30	4	19	45	1.70
26502264--26502379	32	3.5	33	77	5	108	34	25	9	30	1.88
26502377--26502508	34	3.9	33	83	7	158	37	28	10	24	1.88
26502375--26502510	68	2.0	68	89	0	209	36	28	11	24	1.89
26503826--26503870	2	22.0	2	84	4	54	53	4	0	42	1.21
26503899--26504021	42	2.9	42	91	0	210	24	34	21	20	1.97
26505001--26505081	33	2.4	33	89	4	117	23	24	3	48	1.67
26508752--26508842	2	46.0	2	79	10	89	50	5	1	41	1.33
26508875--26508974	37	2.6	39	81	9	127	27	35	17	21	1.95
26513139--26513243	37	2.8	37	95	0	192	20	37	11	31	1.88
26517296--26517455	82	2.0	82	94	0	284	22	16	39	21	1.92
26523997--26524156	43	3.7	43	82	8	148	23	18	36	20	1.95
26523991--26524156	86	1.9	86	81	4	201	23	18	36	22	1.95
26524142--26524184	20	2.2	20	95	4	79	27	4	39	27	1.76
26524197--26524233	2	18.5	2	88	0	56	45	2	2	48	1.30
26530395--26530496	37	2.8	37	89	0	159	26	37	6	29	1.82
26541651--26541693	21	2.0	21	91	8	70	34	25	4	34	1.77
26542656--26542700	22	2.0	22	86	0	63	35	13	11	40	1.80
26542809--26542892	36	2.4	36	88	9	120	29	36	13	20	1.90
26544478--26544506	1	29.0	1	100	0	58	100	0	0	0	0.00
26554703--26554877	43	4.0	45	84	10	195	22	33	18	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26554701--26554889	89	2.1	88	83	6	247	22	32	18	26	1.97
26556560--26556600	19	2.0	21	86	9	59	26	12	12	48	1.75
26561199--26561240	12	3.6	12	74	6	50	7	19	0	73	1.05
26561197--26561244	23	2.1	23	96	0	87	6	20	0	72	1.05
26561246--26561337	47	1.9	48	86	6	134	14	15	7	63	1.51
26561904--26562006	35	3.1	35	62	27	89	39	6	20	33	1.79
26561886--26562012	63	2.0	63	100	0	254	41	7	20	29	1.80
26564102--26564217	35	3.5	33	69	15	94	34	24	14	26	1.94
26564052--26564217	67	2.5	66	83	4	183	34	24	15	25	1.94
26564098--26564238	66	2.1	66	83	7	171	38	24	13	23	1.91
26565941--26565978	20	2.0	20	94	5	69	21	26	15	36	1.93
26566772--26566882	43	2.6	43	86	2	152	23	19	36	19	1.95
26566774--26566895	43	2.8	43	83	2	147	24	18	37	19	1.94
26566918--26566952	2	17.5	2	100	0	70	0	0	48	51	1.00
26567284--26567323	21	1.9	21	84	0	53	25	25	22	27	2.00
26567548--26567612	22	3.0	21	77	4	67	29	26	18	26	1.98
26569215--26569253	20	2.0	20	89	0	60	38	20	2	38	1.66
26574382--26574488	32	3.3	31	74	17	99	30	21	16	30	1.96
26574355--26574521	67	2.5	67	87	1	219	33	24	13	28	1.93
26574392--26574500	32	3.3	32	71	16	96	35	23	14	25	1.93
26574401--26574543	67	2.1	66	84	5	189	37	26	11	23	1.90
26576914--26576988	25	3.0	25	82	3	105	26	14	16	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26576902--26576981	26	3.1	26	78	7	101	28	15	16	40	1.88
26578062--26578162	37	2.8	36	79	10	107	23	16	35	23	1.95
26591411--26591436	13	2.0	13	100	0	52	53	0	0	46	1.00
26593973--26593997	13	1.9	13	100	0	50	40	8	0	52	1.31
26600669--26600726	28	2.1	28	83	6	73	37	22	15	24	1.93
26619202--26619292	36	2.5	36	83	3	103	26	41	13	18	1.87
26629358--26629578	54	4.0	56	83	6	220	24	40	13	21	1.89
26632083--26632116	13	2.6	13	90	0	50	26	11	20	41	1.87
26641850--26641879	15	2.1	15	93	6	53	40	0	13	46	1.43
26668987--26669096	35	3.2	35	74	7	109	30	14	25	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106