genome.fa.s2.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  35  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13464400--13464561	63	2.6	62	87	2	225	23	29	19	27	1.98
13471909--13471948	21	1.9	21	84	0	53	47	12	22	17	1.81
13476495--13476579	29	2.7	31	83	8	102	35	14	11	38	1.82
13476855--13476892	17	2.3	17	86	4	51	50	5	0	44	1.24
13479539--13479675	72	1.9	71	89	1	211	34	21	14	29	1.93
13479697--13479773	23	3.2	24	75	12	77	29	14	19	36	1.91
13479697--13479798	48	2.1	49	92	1	170	30	13	18	37	1.90
13479711--13479799	25	3.6	25	78	6	110	30	14	20	34	1.92
13479711--13479815	25	4.2	25	75	10	81	31	14	19	35	1.91
13480294--13480364	33	2.2	33	100	0	142	23	21	22	32	1.98
13481929--13482008	37	2.2	37	86	4	108	23	36	8	31	1.86
13485332--13486268	76	12.4	76	78	4	811	24	18	19	37	1.94
13485400--13486292	228	3.9	229	80	4	941	24	18	19	37	1.94
13485711--13485771	29	2.0	31	81	12	74	26	21	19	32	1.97
13485332--13486268	152	6.2	152	81	2	1003	24	18	19	37	1.94
13486681--13486728	25	1.9	25	95	0	87	35	4	16	43	1.67
13487637--13487900	81	3.3	80	83	3	296	27	33	13	26	1.93
13491233--13491285	23	2.3	23	90	0	79	22	24	18	33	1.97
13491315--13491892	23	25.3	23	70	8	236	23	31	10	34	1.89
13491449--13491574	45	2.8	46	87	7	177	23	34	7	34	1.84
13491336--13491850	276	1.9	270	79	6	588	22	32	11	33	1.89
13498467--13498592	42	3.0	42	89	0	198	26	35	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13498615--13498647	2	16.5	2	93	0	57	48	0	3	48	1.17
13498861--13499191	164	2.0	164	98	1	646	33	20	9	35	1.86
13504664--13504693	15	2.0	15	93	0	51	50	0	0	50	1.00
13505337--13505367	15	2.1	15	93	0	53	3	25	12	58	1.50
13510696--13510741	21	2.2	21	100	0	92	26	28	15	30	1.96
13514297--13514362	27	2.7	23	77	18	71	51	1	1	45	1.19
13514301--13514354	27	2.0	27	92	0	90	55	1	1	40	1.21
13514409--13514461	28	2.0	28	92	7	92	45	0	3	50	1.19
13514432--13514522	40	2.2	40	81	14	107	41	0	1	57	1.06
13514336--13514509	89	1.9	93	80	13	211	41	0	1	56	1.09
13514435--13514533	40	2.3	41	78	13	103	42	0	1	56	1.06
13516383--13516414	6	5.3	6	100	0	64	18	50	31	0	1.48
13516383--13516420	18	2.1	18	90	0	58	23	47	28	0	1.52
13520060--13520123	30	2.1	30	97	0	119	23	18	9	48	1.77
13520931--13520973	17	2.5	17	80	0	50	25	2	0	72	0.97
13520920--13520972	27	2.0	27	81	7	63	26	1	0	71	0.96
13523576--13523639	32	2.0	32	87	0	92	29	6	9	54	1.57
13529056--13529100	2	22.5	2	100	0	90	48	0	0	51	1.00
13539125--13539192	34	2.0	34	82	0	82	29	10	27	32	1.90
13540557--13540597	19	2.2	19	100	0	82	51	12	9	26	1.70
13552400--13552559	81	2.0	83	87	2	234	36	19	14	30	1.91
13573847--13573927	22	3.7	22	88	0	117	23	25	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13575966--13576082	37	3.2	37	89	4	191	29	10	35	23	1.88
13578815--13578869	2	27.5	2	100	0	110	50	0	0	49	1.00
13589381--13589511	42	3.1	42	85	3	174	24	20	32	22	1.98
13589575--13589612	2	19.0	2	88	0	58	50	2	2	44	1.30
13591086--13591124	19	2.1	19	95	0	69	20	17	15	46	1.84
13591894--13592018	42	3.0	42	90	2	189	20	21	35	23	1.96
13592920--13593105	94	2.0	93	86	2	248	20	18	20	39	1.92
13593507--13593541	17	1.9	19	88	11	56	31	8	2	57	1.44
13593687--13593720	18	1.9	17	88	5	50	14	20	2	61	1.46
13597786--13597826	20	2.0	20	95	0	73	41	0	14	43	1.45
13597795--13597844	25	2.0	25	84	7	66	44	2	20	34	1.63
13599417--13599461	17	2.6	17	96	0	81	44	11	13	31	1.78
13600058--13600160	34	3.0	35	74	2	84	27	14	28	30	1.95
13600067--13600197	68	1.9	67	81	4	156	29	12	26	31	1.93
13604133--13604167	2	17.5	2	100	0	70	48	0	0	51	1.00
13604323--13604359	2	18.5	2	100	0	74	48	0	0	51	1.00
13604128--13604507	192	2.0	190	99	0	742	31	5	17	45	1.71
13614276--13614415	36	3.9	36	81	0	156	29	13	25	31	1.94
13615663--13615734	21	3.4	21	82	0	90	30	5	13	50	1.65
13616217--13616331	51	2.3	49	80	7	133	30	17	14	37	1.90
13616975--13617114	71	2.0	72	84	1	183	20	17	17	44	1.87
13620020--13620050	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622562--13622700	50	2.8	50	80	9	142	33	18	12	35	1.89
13623185--13623223	20	1.9	20	89	5	60	33	20	7	38	1.81
13623981--13624056	31	2.5	31	84	4	91	28	13	9	48	1.73
13641569--13641606	19	2.0	19	94	0	67	28	0	28	42	1.56
13648636--13648673	19	2.0	19	94	0	67	28	0	28	42	1.56
13657308--13657347	12	3.3	12	96	0	71	40	5	10	45	1.60
13665226--13665265	20	2.1	19	85	4	53	7	22	7	62	1.47
13668994--13669623	116	5.5	114	76	7	522	46	2	8	42	1.50
13668982--13669636	346	1.9	347	91	1	1071	46	3	9	41	1.51
13672268--13672312	20	2.3	20	84	3	65	4	26	0	68	1.08
13676102--13676132	16	1.9	16	93	0	53	58	16	0	25	1.38
13679568--13679607	21	1.9	21	89	0	62	35	12	20	32	1.90
13699188--13699278	25	3.5	25	89	5	137	15	19	13	51	1.76
13699264--13699302	11	3.6	11	86	3	53	5	12	0	82	0.83
13699321--13699368	22	2.2	22	96	0	87	12	45	6	35	1.67
13699505--13699601	47	2.1	46	94	1	167	30	29	9	29	1.88
13699505--13699601	23	4.2	23	94	2	167	30	29	9	29	1.88
13699575--13699644	34	2.1	34	97	0	131	32	25	12	28	1.93
13704588--13705096	102	5.0	102	100	0	1018	32	28	16	22	1.96
13708476--13708566	25	3.5	25	89	5	137	15	19	13	51	1.76
13708552--13708590	11	3.6	11	86	3	53	5	12	0	82	0.83
13708609--13708656	22	2.2	22	92	0	78	10	45	8	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13708767--13708855	23	3.8	23	85	5	133	31	28	6	33	1.83
13709024--13709071	25	1.9	26	87	8	73	27	27	6	39	1.80
13714264--13714339	38	2.0	37	89	2	116	27	34	9	28	1.88
13716379--13716416	20	1.9	20	88	0	58	44	13	10	31	1.77
13719119--13719174	27	2.1	27	93	0	94	8	25	17	48	1.76
13719177--13719209	5	6.6	5	100	0	66	0	18	0	81	0.68
13719351--13719460	33	3.2	34	81	11	104	31	26	12	29	1.93
13719381--13719458	35	2.3	33	86	4	102	35	25	8	29	1.87
13722160--13722258	52	1.9	52	85	0	135	28	16	23	32	1.96
13726148--13726185	15	2.5	15	95	4	67	42	0	0	57	0.98
13726271--13726373	51	2.0	51	81	10	122	49	4	1	43	1.35
13726308--13726341	17	2.0	17	88	0	50	50	2	0	47	1.16
13726483--13726556	23	3.3	23	83	5	80	56	4	1	37	1.27
13726481--13726557	22	3.5	21	79	11	91	58	3	1	36	1.25
13726460--13726723	127	2.1	130	86	5	369	55	4	1	38	1.30
13726673--13726704	16	2.1	16	94	5	57	65	0	0	34	0.93
13726680--13726730	26	1.9	27	84	11	70	62	1	0	35	1.06
13726706--13726780	20	3.6	19	73	16	69	54	0	2	42	1.14
13726725--13726798	22	3.5	22	68	18	66	56	0	2	40	1.13
13736127--13736162	3	12.0	3	93	0	63	63	0	36	0	0.94
13748453--13748484	11	2.6	13	80	19	50	21	0	0	78	0.76
13748457--13748491	11	3.4	11	92	7	56	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13761714--13761753	2	20.0	2	89	0	62	45	2	2	50	1.28
13761818--13761943	41	3.0	41	80	4	146	23	31	21	23	1.98
13761832--13761946	42	2.8	42	83	1	151	21	32	21	24	1.98
13763826--13763860	16	2.2	16	90	10	54	17	2	0	80	0.84
13766309--13766783	237	2.0	236	98	1	916	27	17	18	36	1.93
13771374--13771438	22	3.0	21	82	6	67	41	7	23	27	1.81
13772489--13772559	30	2.3	31	85	7	92	33	16	18	30	1.93
13772550--13772652	30	3.4	30	67	10	75	31	13	21	33	1.92
13773901--13773962	21	2.9	21	87	2	79	30	17	22	29	1.97
13774155--13774214	23	2.6	23	94	0	102	33	41	1	23	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106