genome.fa.s2.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  6  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2719659--2719706	24	2.0	24	88	8	71	79	0	20	0	0.74
2732396--2732434	14	2.8	13	88	7	51	64	0	5	30	1.15
2751497--2751548	24	2.2	24	82	6	61	42	1	5	50	1.37
2751658--2751700	19	2.3	18	81	18	52	37	2	4	55	1.33
2752163--2752229	28	2.3	29	77	10	75	41	4	0	53	1.21
2754462--2754582	26	4.4	27	70	12	93	47	1	0	49	1.17
2754468--2754583	42	2.8	43	81	9	141	46	1	0	50	1.17
2754468--2754583	22	5.7	20	74	17	96	46	1	0	50	1.17
2759720--2759768	20	2.4	19	80	12	53	10	6	6	77	1.11
2760566--2760597	10	2.8	12	81	18	50	78	0	0	21	0.76
2760562--2760599	11	3.5	11	83	16	53	76	0	0	23	0.79
2765726--2765779	23	2.5	21	76	8	56	74	0	3	22	0.98
2765753--2765782	15	2.1	15	93	6	53	76	0	0	23	0.78
2765727--2765783	11	4.9	11	74	18	53	75	0	3	21	0.95
2769188--2769260	23	3.1	23	79	11	85	45	17	16	20	1.86
2772189--2772284	47	2.0	47	100	0	192	29	14	10	45	1.78
2774056--2774094	20	2.0	20	90	5	62	46	20	15	17	1.84
2779565--2779648	43	2.0	43	100	0	168	47	15	14	22	1.81
2813827--2813915	29	3.2	28	77	14	80	69	4	0	25	1.07
2813867--2813917	19	2.6	19	82	11	59	74	0	0	25	0.82
2813850--2813933	28	3.0	28	80	13	84	70	1	0	28	0.95
2813854--2813933	18	4.4	19	75	13	69	71	1	0	27	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2814785--2814825	21	2.0	21	85	0	55	60	4	4	29	1.38
2818646--2818685	2	21.5	2	85	14	59	47	0	0	52	1.00
2818634--2818684	15	3.2	16	80	8	59	47	0	1	50	1.12
2818646--2818685	7	5.4	8	82	17	59	47	0	0	52	1.00
2818646--2818685	11	3.5	11	87	12	62	47	0	0	52	1.00
2819584--2819833	130	2.0	126	84	6	333	55	4	8	31	1.50
2833185--2833224	19	2.1	19	100	0	80	20	17	37	25	1.94
2833292--2833329	17	2.1	18	85	9	51	7	36	5	50	1.54
2833332--2833393	10	6.4	10	77	7	74	3	45	3	48	1.34
2833292--2833393	19	5.4	19	75	11	75	5	41	3	49	1.45
2833308--2833398	29	3.3	29	89	6	127	4	42	3	49	1.39
2834225--2834386	80	2.0	80	95	0	288	26	12	17	43	1.84
2839093--2839128	2	18.0	2	100	0	72	50	0	0	50	1.00
2839894--2840035	48	3.0	48	94	0	248	18	36	11	33	1.87
2840912--2841054	75	1.9	75	91	0	232	33	13	23	29	1.93
2843761--2843809	26	2.0	23	84	11	62	32	0	4	63	1.13
2843776--2843812	12	3.2	12	92	3	58	35	0	0	64	0.94
2859993--2860147	53	2.9	54	83	7	181	40	14	14	30	1.87
2860260--2860347	26	3.5	26	72	12	92	42	14	11	31	1.82
2860431--2860515	28	3.1	28	75	14	86	44	15	10	29	1.80
2862959--2863002	2	22.0	2	95	0	79	47	0	2	50	1.13
2863022--2863056	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2875604--2875651	24	2.0	24	87	0	69	45	14	18	20	1.85
2882368--2882415	18	2.6	19	80	6	53	6	4	45	43	1.48
2889885--2889923	20	2.0	21	85	10	55	38	7	12	41	1.72
2890186--2890359	55	3.2	55	80	1	208	42	11	6	39	1.68
2890186--2890390	27	7.6	27	78	7	157	42	11	6	39	1.67
2890279--2890455	78	2.3	79	78	11	177	44	12	5	38	1.64
2891241--2891324	32	2.7	32	85	5	100	34	16	16	32	1.92
2906514--2906543	2	15.0	2	100	0	60	50	0	0	50	1.00
2908388--2908425	18	2.0	21	85	15	55	26	10	7	55	1.61
2911303--2911409	48	2.2	48	96	1	196	32	11	9	46	1.71
2912634--2912660	13	2.1	13	100	0	54	70	0	0	29	0.88
2914653--2914770	33	3.6	33	78	0	128	20	9	36	33	1.85
2915833--2916040	52	4.0	53	82	5	255	40	15	23	20	1.91
2918602--2918670	26	2.6	27	81	2	77	13	26	26	34	1.92
2924721--2924778	27	2.1	27	96	0	107	12	18	24	44	1.84
2925179--2925239	30	2.0	30	93	0	104	34	26	18	21	1.96
2926976--2927057	43	1.9	43	94	0	146	36	13	13	36	1.84
2938156--2938216	29	2.2	27	80	16	63	42	0	4	52	1.23
2940886--2940938	26	2.0	26	85	0	70	24	18	7	49	1.74
2941522--2941601	41	1.9	41	84	5	106	32	20	25	22	1.98
2943101--2943147	24	2.0	24	87	8	69	27	40	14	17	1.89
2943496--2943600	55	1.9	56	88	2	158	28	10	29	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2943555--2943643	43	2.0	45	89	6	137	23	7	31	37	1.84
2953971--2954021	22	2.3	23	83	13	70	47	11	9	31	1.73
2962340--2962364	2	12.5	2	100	0	50	0	52	0	48	1.00
2965444--2965486	18	2.4	18	77	14	52	67	4	27	0	1.10
2977537--2977566	9	3.2	9	90	9	51	26	0	0	73	0.84
2977535--2977564	10	3.1	10	90	9	53	26	0	0	73	0.84
2978655--2978718	34	1.9	33	87	9	94	28	0	10	60	1.30
2979755--2979928	64	2.7	64	83	3	215	44	10	5	39	1.62
2980056--2980095	16	2.4	17	91	8	64	55	0	0	45	0.99
3000151--3000192	2	21.0	2	100	0	84	50	0	0	50	1.00
3011765--3011827	30	2.1	30	87	0	90	36	9	6	47	1.62
3031397--3031442	23	2.0	23	86	0	65	10	19	13	56	1.66
3031852--3032026	52	3.1	57	80	9	148	33	15	13	37	1.86
3031923--3032026	52	2.0	52	88	0	154	32	16	14	36	1.89
3032057--3032101	21	2.1	21	91	0	72	35	20	17	26	1.95
3032017--3032141	66	1.9	66	85	3	171	31	18	16	34	1.93
3032082--3032214	45	3.0	45	85	0	176	30	18	13	36	1.90
3034626--3034662	16	2.3	16	90	0	56	64	2	0	32	1.07
3046699--3046734	16	2.2	16	90	0	54	11	11	25	52	1.69
3054024--3054058	17	2.0	17	88	5	52	0	22	0	77	0.78
3058007--3058084	24	3.1	26	80	10	83	42	0	56	0	0.99
3058007--3058067	2	31.0	2	83	9	81	44	0	54	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3063282--3063317	2	18.0	2	94	0	63	47	0	0	52	1.00
3070931--3071156	124	1.8	123	98	0	326	48	13	15	23	1.80
3076765--3076830	17	3.9	17	74	14	57	45	3	0	51	1.16
3077348--3077413	17	3.9	17	74	14	57	46	3	1	48	1.26
3103637--3103666	1	30.0	1	93	0	51	0	0	3	96	0.21
3105701--3106477	389	2.0	388	99	0	1527	39	8	11	40	1.71
3109133--3109197	29	2.2	29	88	0	94	24	12	26	36	1.91
3117176--3117206	1	31.0	1	100	0	62	100	0	0	0	0.00
3120858--3120917	31	1.9	30	83	12	77	35	3	0	61	1.12
3121026--3121096	27	2.5	30	76	21	80	57	0	0	42	0.98
3121027--3121102	29	2.7	27	78	11	91	60	0	0	39	0.97
3134689--3134741	18	2.9	18	91	0	88	47	20	11	20	1.81
3141700--3141832	66	2.0	66	100	0	266	33	15	11	40	1.82
3154077--3154119	2	21.5	2	100	0	86	51	0	0	48	1.00
3164418--3164464	24	2.0	24	95	0	85	27	59	8	4	1.45
3173010--3173045	19	1.9	19	88	5	56	72	0	5	22	1.05
3179528--3179559	16	2.0	16	93	0	55	59	0	18	21	1.38
3179754--3179806	22	2.3	23	80	3	63	45	1	1	50	1.23
3188725--3188749	13	1.9	13	100	0	50	8	12	40	40	1.72
3199750--3199820	30	2.4	30	78	0	79	49	7	9	33	1.63
3200011--3200183	87	2.0	87	89	4	269	47	9	5	37	1.60
3203526--3203568	23	1.9	23	85	4	61	11	2	18	67	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203972--3204081	33	3.3	33	83	5	141	23	11	39	25	1.89
3216811--3216868	28	2.1	28	90	6	91	48	8	17	25	1.75
3219295--3219323	2	14.5	2	100	0	58	48	0	0	51	1.00
3219363--3219389	2	13.5	2	100	0	54	48	0	0	51	1.00
3224128--3224168	17	2.5	17	84	11	50	29	0	4	65	1.13
3224124--3224167	19	2.3	18	81	14	52	29	0	4	65	1.12
3229086--3229138	20	2.5	21	77	17	65	9	26	15	49	1.74
3236610--3236745	70	2.0	69	86	7	195	31	13	4	50	1.62
3242656--3242698	10	4.1	11	80	19	56	72	0	2	25	0.97
3242646--3242713	25	2.6	26	84	15	88	70	0	2	26	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106