genome.fa.s2.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  31  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12114555--12114603	26	2.0	24	84	8	62	38	12	22	26	1.89
12118356--12118393	20	1.9	20	100	0	76	28	5	21	44	1.73
12119624--12119648	13	1.9	13	100	0	50	44	0	8	48	1.32
12121902--12121930	10	2.7	11	89	10	51	75	6	0	17	1.01
12121923--12121974	20	2.7	20	78	3	61	57	9	0	32	1.31
12121946--12121991	24	2.0	23	83	12	58	65	6	0	28	1.17
12155249--12155287	19	2.1	19	85	9	53	30	5	17	46	1.70
12156856--12156908	25	2.1	25	89	0	79	35	18	22	22	1.95
12159612--12159657	20	2.3	20	96	0	83	45	21	4	28	1.71
12164420--12164467	23	2.1	23	100	0	96	37	4	8	50	1.52
12168427--12168640	82	2.7	80	83	2	261	31	20	14	34	1.92
12171594--12171653	17	3.7	16	76	12	68	50	0	1	48	1.11
12171542--12171664	43	2.9	43	74	18	125	51	0	1	46	1.16
12172014--12172072	27	2.1	28	87	3	84	50	1	1	45	1.21
12172081--12172161	37	2.1	38	81	4	92	41	4	1	51	1.31
12173860--12173916	28	2.0	28	96	0	105	38	7	5	49	1.53
12176063--12176131	27	2.6	27	79	2	77	50	1	0	47	1.09
12184167--12184350	90	2.0	90	98	0	359	36	10	15	36	1.83
12191184--12191262	29	2.7	28	76	7	77	26	10	15	48	1.76
12192670--12192732	24	2.7	22	76	13	56	23	0	6	69	1.11
12192980--12193042	28	2.2	28	78	10	67	22	4	3	69	1.21
12192986--12193029	23	1.9	23	85	0	61	20	4	2	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12195250--12195329	40	2.0	40	97	2	144	28	12	5	52	1.60
12199322--12199370	21	2.5	20	81	18	66	55	8	0	36	1.30
12199322--12199379	21	2.8	20	73	19	57	53	8	0	37	1.32
12200103--12200170	30	2.3	30	89	0	100	13	30	4	51	1.60
12206660--12206700	13	3.2	13	79	6	57	36	7	12	43	1.70
12215656--12215728	29	2.4	29	81	4	92	27	9	16	46	1.78
12219203--12219596	200	2.0	199	87	4	578	18	24	13	43	1.86
12228045--12228182	69	1.9	73	83	11	180	28	15	4	50	1.63
12228462--12228493	14	2.3	14	94	0	55	53	0	3	43	1.16
12237747--12237801	22	2.5	21	82	8	74	21	12	20	45	1.84
12237568--12238156	207	2.9	205	85	1	797	20	13	26	39	1.90
12237955--12238008	22	2.5	21	79	8	63	18	14	22	44	1.86
12242217--12242304	23	3.8	23	71	5	79	31	29	12	26	1.93
12243361--12243395	15	2.3	15	95	0	61	14	11	20	54	1.70
12245044--12245522	184	2.6	182	89	1	715	34	16	12	36	1.86
12245044--12245522	61	7.8	61	90	0	699	34	16	12	36	1.86
12247755--12247806	23	2.3	23	86	0	77	32	28	11	26	1.91
12247767--12247817	23	2.2	23	92	0	84	31	29	9	29	1.89
12248004--12248070	23	2.9	23	81	0	80	40	26	7	25	1.82
12250405--12250482	12	6.5	12	69	5	59	37	14	35	12	1.84
12251884--12251932	20	2.6	17	76	17	53	24	4	8	63	1.40
12253753--12253821	23	3.0	23	82	0	84	42	26	11	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12268949--12269005	22	2.6	22	72	10	62	43	7	0	49	1.29
12269595--12269656	20	3.0	20	75	13	56	33	4	0	61	1.17
12269653--12269711	5	12.4	5	75	10	52	27	0	0	72	0.84
12269638--12269721	37	2.3	37	83	6	109	32	1	0	66	0.99
12269652--12269734	38	2.2	38	82	4	96	33	1	0	65	1.01
12273728--12273755	2	14.0	2	100	0	56	0	50	0	50	1.00
12282226--12282408	92	2.0	92	95	0	330	34	18	18	27	1.95
12289236--12289305	37	1.9	37	85	2	97	40	20	10	30	1.85
12289281--12289339	32	1.9	30	86	6	82	28	23	10	37	1.88
12289852--12289895	21	2.2	20	83	4	52	43	6	9	40	1.63
12296600--12296637	12	3.4	11	86	13	51	71	0	2	26	1.00
12296606--12296639	10	3.2	10	91	8	50	76	0	2	20	0.92
12296734--12296768	18	1.9	18	88	0	52	17	17	14	51	1.77
12302746--12302777	2	17.0	2	87	12	50	50	0	0	50	1.00
12302743--12302777	18	1.9	18	100	0	70	51	0	0	48	1.00
12302748--12302782	16	2.2	16	100	0	70	48	0	0	51	1.00
12309233--12309296	31	2.0	32	91	8	105	48	7	12	29	1.69
12309629--12309673	17	2.7	16	89	6	63	24	4	0	71	1.05
12309629--12309670	18	2.4	17	88	4	57	21	4	0	73	1.01
12313647--12313684	3	12.7	3	83	10	51	73	0	0	26	0.83
12313647--12313680	13	2.7	13	95	4	61	73	0	0	26	0.83
12313647--12313692	22	2.1	22	88	8	67	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12313645--12313724	19	4.4	18	73	20	69	71	1	0	27	0.94
12327203--12327240	3	12.7	3	83	10	51	73	0	0	26	0.83
12327203--12327236	13	2.7	13	95	4	61	73	0	0	26	0.83
12327203--12327249	22	2.1	22	88	7	69	72	0	0	27	0.85
12327201--12327249	19	2.6	20	87	12	77	71	0	0	28	0.86
12333867--12333923	21	2.7	21	80	0	69	22	31	19	26	1.98
12336727--12336760	17	1.9	18	88	5	52	35	0	5	58	1.22
12340569--12340754	7	27.4	7	67	13	77	26	0	0	72	0.89
12340572--12340756	8	20.9	9	66	24	60	27	0	0	71	0.90
12340564--12340648	34	2.5	34	92	3	136	28	0	0	71	0.86
12340502--12340738	74	3.2	73	81	10	207	29	1	0	69	1.00
12340598--12340757	48	3.4	48	70	15	134	27	0	0	71	0.90
12340507--12340757	114	2.2	113	77	13	242	29	1	0	69	0.99
12340624--12340757	53	2.5	54	81	15	154	27	0	0	71	0.91
12340551--12340755	34	6.2	35	74	14	93	27	0	0	70	0.97
12340574--12340760	34	5.5	33	71	16	118	27	0	0	71	0.90
12346526--12346623	22	4.4	22	66	10	63	37	0	2	60	1.09
12346555--12346726	83	2.1	84	80	5	197	40	3	2	54	1.30
12346525--12346673	68	2.2	66	82	7	165	38	2	2	56	1.28
12346574--12346740	83	2.0	83	89	4	257	38	4	2	54	1.35
12360979--12361012	16	2.2	16	89	5	52	38	0	0	61	0.96
12361668--12361711	23	1.9	23	100	0	88	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12371982--12372035	26	2.1	26	82	6	65	46	14	18	20	1.84
12372281--12372362	29	2.8	28	87	7	110	17	25	10	46	1.80
12384529--12384577	3	17.3	3	83	12	68	30	0	0	69	0.89
12385625--12385762	41	3.5	41	73	14	135	51	7	7	33	1.59
12385738--12385782	19	2.4	18	78	7	54	51	4	8	35	1.54
12386041--12386161	26	4.3	26	72	17	89	43	18	18	19	1.88
12386430--12386488	29	2.0	29	90	0	91	18	23	10	47	1.79
12386708--12386732	13	1.9	13	100	0	50	20	32	0	48	1.50
12389659--12389713	26	2.1	26	89	0	83	21	3	10	63	1.42
12392620--12392654	15	2.3	15	85	0	52	42	5	2	48	1.41
12392854--12392926	33	2.1	35	82	9	89	26	0	13	60	1.34
12394847--12394982	35	3.9	35	87	0	200	43	17	19	19	1.88
12394836--12394988	70	2.2	70	89	0	234	44	18	18	18	1.87
12394990--12395061	18	4.1	18	72	1	56	47	20	9	22	1.79
12395240--12395309	29	2.4	28	86	9	95	20	25	8	45	1.79
12396048--12396329	102	2.8	101	82	4	343	21	21	15	41	1.90
12396401--12396455	26	2.1	27	86	3	76	29	14	16	40	1.88
12398118--12398174	15	3.9	14	82	15	62	71	1	0	26	0.95
12398129--12398164	12	3.1	11	92	8	54	72	0	0	27	0.85
12398845--12398915	15	4.4	16	81	10	83	74	0	0	25	0.82
12398835--12398909	3	27.7	3	72	20	51	72	0	2	25	0.98
12398829--12398919	38	2.5	35	80	15	96	73	0	2	24	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12398854--12398925	14	5.0	14	73	20	60	72	0	1	26	0.93
12398845--12398919	29	2.5	31	79	16	95	74	0	0	25	0.82
12398849--12398925	15	5.0	17	71	28	66	72	0	1	25	0.92
12398835--12398925	27	3.1	29	78	13	89	71	0	3	25	1.01
12398924--12398986	30	2.1	30	82	5	74	38	11	9	41	1.73
12401565--12401601	16	2.3	16	100	0	74	35	8	29	27	1.85
12403108--12403231	65	1.9	64	93	1	212	47	6	9	36	1.62
12403191--12403322	41	3.2	41	74	9	153	55	7	6	31	1.52
12403606--12403749	35	4.1	35	88	0	207	43	18	19	18	1.88
12403606--12403768	70	2.3	70	85	2	184	44	18	17	19	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106