genome.fa.s2.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  50  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18762022--18762052	16	1.9	16	93	0	53	22	19	12	45	1.84
18764470--18764547	37	2.1	37	95	0	138	28	11	35	24	1.90
18778193--18778580	196	2.0	192	91	1	614	28	21	17	32	1.96
18780668--18780806	38	3.6	38	82	1	143	21	35	18	24	1.96
18785994--18786095	38	2.6	39	81	4	116	23	17	37	21	1.94
18789747--18789784	18	2.1	18	95	0	67	39	18	15	26	1.91
18790331--18790373	20	2.2	20	86	0	59	37	0	4	58	1.19
18789803--18790511	252	2.8	246	80	6	798	31	10	9	48	1.69
18791206--18791246	21	1.9	22	90	5	66	51	7	24	17	1.70
18791206--18791252	21	2.2	21	84	3	58	55	8	21	14	1.66
18795130--18795222	35	2.7	35	74	0	96	31	16	18	34	1.93
18796921--18796966	23	2.0	23	100	0	92	34	30	8	26	1.86
18797765--18797816	25	2.1	25	92	0	86	38	11	5	44	1.65
18799623--18799647	13	1.9	13	100	0	50	48	8	0	44	1.32
18818055--18818100	20	2.3	20	88	0	65	45	19	6	28	1.75
18819506--18819546	20	2.0	20	95	0	73	43	14	0	41	1.45
18827269--18827314	21	2.2	22	84	7	60	60	10	15	13	1.58
18834421--18834459	17	2.4	17	91	8	64	58	7	2	30	1.39
18837472--18837567	39	2.5	39	89	0	147	21	21	20	35	1.96
18843140--18843250	2	57.0	2	76	18	101	48	2	2	45	1.31
18843996--18845569	250	6.3	247	78	6	1426	31	11	8	48	1.69
18844427--18844456	16	1.9	16	93	6	53	20	3	0	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18843996--18845547	503	3.1	499	82	4	1748	32	11	8	48	1.69
18846816--18848825	507	4.0	506	74	9	1158	32	12	7	46	1.70
18846679--18848825	252	8.6	252	75	7	1615	32	12	7	47	1.70
18848125--18848154	16	1.9	16	93	6	53	20	10	0	70	1.16
18848346--18848823	247	1.9	252	87	3	716	33	13	5	47	1.65
18850428--18850470	15	2.8	15	82	10	52	81	2	16	0	0.79
18850456--18850511	27	2.1	27	83	6	69	50	17	23	8	1.74
18850500--18850562	25	2.5	25	89	5	92	41	15	25	17	1.89
18850490--18850576	25	3.5	24	82	13	79	45	11	26	16	1.81
18859891--18859942	28	1.9	27	84	7	70	28	19	19	32	1.96
18862199--18862255	22	2.6	22	88	0	78	29	3	22	43	1.70
18862247--18862287	11	3.7	11	90	0	55	29	4	21	43	1.73
18862317--18862346	5	6.0	5	92	0	51	43	0	20	36	1.52
18863897--18863942	20	2.3	20	96	0	83	28	4	21	45	1.71
18892215--18894381	502	4.3	500	77	7	1969	32	11	7	48	1.67
18892215--18894379	251	8.6	250	76	8	1233	32	11	7	48	1.67
18892385--18894379	754	2.7	745	78	7	1944	32	11	7	48	1.68
18894707--18894752	20	2.3	20	88	0	65	30	2	23	43	1.66
18894716--18894753	20	1.9	20	94	0	67	31	0	28	39	1.57
18897350--18897382	15	2.3	14	94	5	57	24	0	15	60	1.35
18897350--18897390	15	2.8	14	85	10	55	21	0	17	60	1.35
18899012--18899130	43	2.8	43	88	2	159	19	36	21	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18899917--18899954	19	2.0	20	89	5	60	36	13	26	23	1.91
18901419--18901489	30	2.4	29	86	6	90	29	22	18	29	1.97
18901419--18901510	29	3.1	29	84	4	96	32	27	15	25	1.95
18902736--18902813	37	2.1	37	92	4	131	24	37	10	28	1.88
18904917--18904954	19	2.0	19	94	0	67	26	2	31	39	1.70
18917115--18917167	22	2.3	23	87	3	72	49	9	22	18	1.76
18919393--18919555	74	2.2	74	93	0	272	25	23	14	36	1.93
18920958--18920992	16	2.2	16	89	0	52	48	8	2	40	1.49
18922338--18922375	19	2.0	19	94	0	67	42	28	0	28	1.56
18923419--18923457	21	1.9	20	89	5	60	74	2	23	0	0.94
18924488--18924557	24	2.9	24	70	6	61	58	2	4	34	1.32
18924711--18924762	15	3.5	15	79	10	61	34	21	9	34	1.86
18929053--18929094	19	2.2	19	91	0	66	73	2	2	21	1.06
18929048--18929094	10	4.7	10	76	7	51	72	2	2	23	1.06
18929053--18929094	10	4.4	9	85	8	57	73	2	2	21	1.06
18929036--18929096	10	6.9	8	74	17	50	70	3	1	24	1.11
18934757--18934806	21	2.4	21	89	0	73	52	0	20	28	1.47
18935834--18935873	21	1.9	21	90	10	64	70	7	2	20	1.24
18936115--18936154	21	2.0	21	85	14	57	45	2	12	40	1.56
18945910--18945947	20	1.9	20	94	0	67	36	15	21	26	1.93
18960875--18961042	30	5.7	29	82	8	205	37	13	10	39	1.78
18960885--18961048	59	2.8	59	80	8	208	38	12	10	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18970371--18970427	26	2.2	26	87	0	78	31	21	19	28	1.97
18974944--18975047	42	2.4	43	82	3	129	28	19	30	21	1.97
18975425--18975513	39	2.3	39	88	0	124	25	21	20	32	1.97
18978745--18978916	72	2.4	71	82	6	206	31	19	11	37	1.87
18985035--18985078	23	1.9	23	95	0	79	36	25	15	22	1.94
18989404--18989443	19	2.1	19	100	0	80	47	10	20	22	1.79
18989799--18989910	43	2.6	43	86	6	147	24	19	36	19	1.95
19002122--19002175	20	2.7	20	91	0	90	40	14	16	27	1.88
19006573--19006625	16	3.2	16	86	7	63	66	7	5	20	1.38
19011800--19011841	20	2.2	19	84	16	52	30	2	26	40	1.69
19011836--19011955	49	2.4	49	90	2	188	25	16	33	24	1.96
19019564--19019666	32	3.1	33	73	15	104	39	24	12	23	1.89
19020150--19020180	13	2.4	13	94	0	53	19	16	29	35	1.93
19022138--19022176	20	2.0	20	89	0	60	38	20	2	38	1.66
19026861--19027115	67	3.8	67	88	1	377	35	25	14	23	1.93
19026883--19027112	35	6.9	34	67	13	138	36	24	14	24	1.93
19036334--19036526	29	6.7	29	85	4	255	38	12	11	37	1.79
19103123--19103161	4	9.8	4	85	0	51	41	0	2	56	1.13
19103123--19103161	6	6.5	6	87	0	51	41	0	2	56	1.13
19103123--19103161	10	3.9	10	93	0	51	41	0	2	56	1.13
19103127--19103161	10	3.5	10	92	0	52	40	0	2	57	1.14
19114422--19114472	2	25.5	2	95	0	93	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19130882--19130968	2	44.0	2	90	6	124	44	0	2	51	1.14
19130860--19130968	55	2.0	56	96	3	195	42	0	3	53	1.18
19140505--19140681	39	4.6	39	89	3	236	24	14	36	23	1.93
19144955--19144984	3	10.0	3	100	0	60	33	0	0	66	0.92
19145688--19145779	46	2.0	46	97	0	175	44	17	1	36	1.56
19145949--19145976	2	14.0	2	100	0	56	50	0	0	50	1.00
19147328--19147367	21	1.9	21	89	0	62	60	2	25	12	1.45
19149774--19149805	13	2.5	13	94	0	55	56	9	6	28	1.55
19151072--19151348	144	1.9	144	86	1	394	35	12	16	35	1.87
19151461--19152374	463	2.0	456	86	4	1282	40	13	17	27	1.88
19155379--19155426	17	2.9	17	84	3	71	56	16	10	16	1.67
19164444--19164496	28	1.9	27	88	3	79	33	13	18	33	1.90
19169654--19169690	19	1.9	19	100	0	74	27	0	29	43	1.55
19170043--19170085	21	2.0	22	82	13	54	60	6	23	9	1.51
19172312--19172395	33	2.5	32	83	7	96	28	3	0	67	1.07
19174511--19174575	34	1.9	35	81	6	80	27	9	26	36	1.87
19177202--19177226	13	1.9	13	100	0	50	48	8	0	44	1.32
19184409--19184445	18	2.1	18	90	10	58	51	29	18	0	1.47
19191870--19191938	32	2.2	31	84	5	86	27	4	1	66	1.19
19196495--19196531	19	1.9	19	94	0	65	24	21	27	27	1.99
19196967--19196998	2	16.0	2	100	0	64	50	0	0	50	1.00
19197025--19197157	42	3.1	41	87	5	185	24	32	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19204662--19204707	22	2.1	22	83	0	56	19	8	19	52	1.72
19205040--19205076	17	2.2	17	90	0	56	29	24	35	10	1.89
19223162--19223223	25	2.5	25	86	5	81	32	14	9	43	1.78
19229895--19229974	32	2.6	31	79	11	85	55	20	15	10	1.68
19230643--19230702	31	2.0	30	83	3	75	65	15	5	15	1.44
19231057--19231178	63	1.9	64	83	1	156	31	13	22	31	1.93
19232668--19232757	45	2.0	45	93	0	153	32	27	23	16	1.96
19233180--19233257	28	2.9	27	87	7	106	44	8	16	29	1.78
19241283--19241322	2	20.0	2	100	0	80	50	0	0	50	1.00
19245373--19245397	6	4.2	6	100	0	50	52	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106