genome.fa.s2.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  41  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15575714--15575888	67	2.6	67	87	4	248	25	12	26	36	1.91
15580956--15580997	21	2.0	21	90	0	66	35	16	26	21	1.94
15584729--15584893	35	4.9	34	70	9	124	25	13	25	35	1.93
15584726--15584901	67	2.6	67	88	1	273	25	13	26	35	1.92
15584726--15584874	35	4.5	32	76	14	140	24	12	26	36	1.90
15587649--15587746	2	49.5	2	82	17	125	51	3	0	44	1.17
15587847--15587934	37	2.4	37	80	3	97	37	22	21	18	1.94
15587916--15588006	37	2.5	37	85	0	110	37	23	20	18	1.94
15592518--15592559	20	2.0	21	81	4	50	73	9	11	4	1.22
15607350--15607388	20	2.0	20	95	5	71	30	0	28	41	1.57
15643141--15643172	13	2.6	12	90	9	55	28	9	18	43	1.81
15643144--15643171	13	2.2	13	100	0	56	21	7	21	50	1.72
15643908--15643933	13	2.0	13	100	0	52	53	0	0	46	1.00
15648595--15648646	2	26.5	2	88	3	79	46	1	1	50	1.23
15648677--15648723	2	23.5	2	100	0	94	48	0	0	51	1.00
15648608--15648750	77	1.9	76	100	0	277	34	9	9	46	1.69
15649693--15649717	13	1.9	13	100	0	50	32	4	0	64	1.12
15654788--15654812	13	1.9	13	100	0	50	32	4	0	64	1.12
15655693--15655752	23	2.6	23	84	12	70	66	3	10	20	1.35
15655731--15655779	23	2.2	23	85	7	66	65	0	14	20	1.27
15655801--15655852	22	2.5	21	75	9	61	61	1	0	36	1.07
15656521--15656568	23	2.1	23	84	3	62	8	20	8	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15658829--15658867	3	13.0	3	100	0	78	33	0	0	66	0.92
15659786--15659823	19	2.0	19	94	0	67	26	0	28	44	1.54
15675488--15675521	12	2.8	12	86	0	50	55	0	41	2	1.15
15677248--15677352	2	52.5	2	83	7	115	45	2	3	46	1.36
15678842--15678917	33	2.2	34	88	4	109	25	14	23	36	1.93
15685099--15685199	29	3.7	27	72	20	95	27	8	3	58	1.46
15685113--15685213	51	2.1	48	87	10	143	30	7	3	56	1.46
15697940--15698001	26	2.3	28	88	5	92	50	3	0	46	1.17
15697911--15697990	42	1.9	42	84	2	108	51	2	1	45	1.22
15697922--15698307	154	2.5	153	84	3	494	50	4	2	43	1.34
15698286--15698351	27	2.4	27	80	7	71	54	1	1	42	1.18
15698388--15698429	8	5.4	8	77	5	50	57	0	2	40	1.12
15698388--15698431	15	2.8	16	86	6	63	56	0	2	40	1.11
15698319--15698449	68	1.9	68	80	9	151	60	1	0	37	1.12
15704622--15704655	18	1.9	17	88	5	50	32	5	2	58	1.37
15705465--15705510	15	3.1	15	78	12	58	56	17	2	23	1.52
15721803--15721895	34	2.7	34	84	0	123	35	31	12	20	1.90
15727917--15727948	16	2.0	16	100	0	64	50	18	6	25	1.70
15738598--15738658	32	1.9	32	100	0	122	31	16	21	31	1.95
15743094--15743128	17	2.1	17	94	0	61	8	37	22	31	1.85
15754507--15754548	21	2.0	22	86	13	61	23	4	21	50	1.68
15754581--15754621	21	2.1	19	86	9	55	29	2	9	58	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15760807--15760847	21	2.1	19	86	9	55	29	0	9	60	1.28
15769039--15769142	42	2.5	42	82	7	129	24	18	33	24	1.97
15769422--15769499	30	2.6	30	85	0	102	28	23	23	25	1.99
15779905--15780034	60	2.2	61	83	5	158	29	22	19	29	1.98
15780405--15780518	43	2.7	43	81	2	140	19	35	19	26	1.95
15784194--15784242	21	2.4	20	90	6	80	67	6	0	26	1.14
15790261--15790337	38	2.0	38	94	0	136	46	19	5	28	1.71
15799172--15799215	22	2.0	22	81	0	52	43	15	6	34	1.74
15803402--15803484	3	27.7	3	85	4	114	33	30	0	36	1.58
15804902--15804950	15	3.1	15	79	5	53	77	0	4	18	0.92
15805035--15805176	24	5.8	24	71	17	112	25	7	41	26	1.80
15805069--15805169	15	6.7	15	70	20	59	23	6	42	26	1.79
15805035--15805214	99	1.8	99	90	0	288	25	7	40	26	1.82
15805015--15805172	8	20.5	8	69	13	50	27	6	39	25	1.80
15805367--15805433	13	4.7	13	73	20	53	28	0	4	67	1.10
15805369--15805433	15	4.3	15	81	12	80	27	0	4	67	1.10
15806887--15806975	21	4.2	21	83	1	106	24	19	15	40	1.90
15817443--15817482	21	1.9	21	100	0	80	35	15	27	22	1.94
15821834--15821929	38	2.5	39	82	3	104	26	18	34	20	1.96
15824294--15824396	40	2.7	40	84	4	131	23	41	13	21	1.88
15835120--15835162	14	3.1	14	76	10	52	58	4	0	37	1.19
15837574--15837599	13	2.0	13	100	0	52	53	7	0	38	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15838320--15838351	10	3.1	11	91	8	50	9	25	0	65	1.22
15845076--15845126	22	2.3	22	89	0	84	47	25	5	21	1.73
15847512--15847552	2	20.5	2	90	9	66	48	0	2	48	1.14
15852165--15852326	42	3.9	42	85	1	182	25	31	20	22	1.98
15863547--15863590	21	2.1	21	100	0	88	25	25	22	27	2.00
15867878--15867939	26	2.4	26	94	0	106	32	40	3	24	1.71
15872467--15872494	10	2.8	10	100	0	56	32	14	32	21	1.93
15873139--15873197	3	19.7	3	82	0	64	33	25	0	40	1.56
15873139--15873194	12	4.7	12	86	0	76	33	25	0	41	1.56
15875118--15875164	21	2.2	21	88	0	67	23	14	23	38	1.92
15877610--15877730	42	2.9	42	83	3	145	23	16	38	20	1.92
15879810--15879852	14	3.1	14	76	10	52	58	4	0	37	1.19
15883336--15883434	29	3.4	29	84	5	128	32	19	11	37	1.87
15885703--15885745	21	2.0	21	86	8	61	41	41	0	16	1.48
15886348--15886388	20	2.0	20	85	4	55	46	21	4	26	1.72
15887044--15887171	50	2.5	50	84	3	159	47	8	9	34	1.66
15887144--15887199	28	2.0	28	89	6	87	42	14	8	33	1.77
15889517--15889587	38	1.9	35	83	8	88	43	28	9	18	1.81
15889572--15889660	40	2.3	38	79	7	106	35	26	10	26	1.88
15889582--15889703	40	3.1	39	78	7	122	31	27	9	30	1.89
15892400--15892439	2	20.0	2	94	0	71	50	47	0	2	1.14
15894020--15894116	32	2.9	33	72	10	90	22	12	27	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15894022--15894149	67	1.9	67	85	3	177	25	14	26	33	1.94
15895044--15895148	35	2.8	35	82	8	111	43	22	16	17	1.87
15895047--15895165	41	3.0	41	82	9	133	42	22	17	16	1.88
15895432--15895504	29	2.6	29	86	6	96	13	23	9	53	1.69
15902316--15902341	2	13.0	2	100	0	52	50	0	0	50	1.00
15902379--15902404	2	13.0	2	100	0	52	50	0	0	50	1.00
15902314--15902436	63	1.9	61	91	6	174	45	4	1	47	1.31
15908296--15909399	550	2.0	550	97	0	2068	28	19	16	35	1.93
15912726--15912789	29	2.2	28	86	5	83	25	3	1	70	1.11
15912745--15912813	20	3.4	21	70	9	63	24	1	0	73	0.91
15912738--15912819	37	2.2	38	80	14	98	25	1	0	73	0.91
15914568--15914613	2	24.0	2	79	16	53	50	0	47	2	1.13
15914568--15914607	17	2.4	17	91	4	64	50	0	50	0	1.00
15914851--15914892	21	2.0	21	81	9	50	30	19	16	33	1.94
15917587--15917748	88	1.9	87	86	1	234	27	12	20	38	1.89
15918348--15918437	30	3.0	30	91	0	153	26	16	27	28	1.97
15919073--15919505	111	3.8	112	81	4	478	18	12	25	43	1.84
15919297--15919545	118	2.1	117	82	0	291	20	12	24	42	1.87
15919362--15919577	118	1.8	118	79	2	254	18	12	24	44	1.85
15925353--15925477	21	5.7	21	68	12	72	35	28	16	20	1.93
15925612--15925647	16	2.3	16	90	4	56	80	0	16	2	0.83
15925609--15925644	18	2.0	18	89	10	56	80	0	16	2	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15929688--15929788	47	2.1	47	96	0	184	29	22	11	35	1.90
15930135--15930200	26	2.8	23	79	18	73	57	6	13	22	1.58
15930142--15930193	26	2.0	26	96	0	95	57	7	13	21	1.61
15931923--15931968	24	1.9	24	86	0	65	36	21	41	0	1.54
15944526--15944570	10	4.6	10	83	2	56	57	2	0	40	1.11
15946458--15946522	28	2.3	28	86	5	87	38	7	10	43	1.68
15952295--15952748	47	9.7	48	79	4	401	30	17	27	24	1.97
15952481--15952650	23	7.3	23	67	10	85	31	14	27	27	1.95
15952320--15952748	187	2.3	188	81	5	474	30	17	27	24	1.97
15952320--15952814	94	5.3	94	76	6	409	30	16	27	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106