genome.fa.s2.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  11  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5231403--5231498	25	3.6	26	73	13	88	29	4	2	64	1.23
5231409--5231512	55	1.9	55	86	7	149	28	4	1	64	1.25
5248006--5248078	29	2.5	29	80	10	78	41	5	0	53	1.24
5254569--5254626	27	2.1	27	87	6	82	22	17	32	27	1.96
5254547--5254835	61	4.7	61	85	0	380	33	15	20	30	1.93
5254596--5254880	34	9.0	34	68	15	162	34	14	19	30	1.92
5254752--5254803	27	1.9	27	88	0	77	36	19	19	25	1.95
5254752--5254809	27	2.1	27	83	0	71	36	17	18	27	1.94
5262083--5262120	19	2.0	19	94	0	67	31	13	28	26	1.93
5274035--5274077	20	2.1	21	83	12	54	20	13	4	60	1.51
5275546--5275585	17	2.2	19	86	8	57	7	2	12	77	1.07
5277645--5277699	13	4.2	13	73	15	51	50	0	0	49	1.00
5279209--5279420	108	1.9	109	87	3	311	37	14	3	44	1.63
5286115--5286205	27	3.3	28	81	6	89	17	27	24	30	1.97
5286136--5286196	28	2.2	28	88	2	88	14	27	22	34	1.94
5286189--5286282	27	3.5	27	75	1	91	20	30	17	31	1.95
5291476--5291517	18	2.5	17	82	17	52	66	2	7	23	1.28
5294131--5294236	6	17.7	6	82	0	95	4	20	70	3	1.21
5294134--5294243	27	4.1	27	89	4	159	5	20	70	4	1.26
5294152--5294234	21	3.7	21	80	17	103	3	20	71	4	1.20
5297919--5297968	11	4.6	11	78	11	50	72	12	6	10	1.28
5298024--5298126	50	2.1	50	92	0	170	57	7	8	26	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5299485--5299543	2	30.0	2	90	10	95	49	1	0	49	1.11
5299485--5299543	11	5.0	12	88	12	95	49	1	0	49	1.11
5299485--5299543	15	3.8	15	89	8	91	49	1	0	49	1.11
5310993--5311035	2	22.5	2	82	17	56	46	0	2	51	1.13
5311117--5311185	35	1.9	35	88	2	102	17	14	39	28	1.89
5313185--5313306	63	1.9	64	88	1	183	18	17	13	50	1.79
5315816--5317132	445	3.0	443	78	7	1096	28	13	15	43	1.84
5326737--5326785	22	2.2	23	85	7	66	20	14	0	65	1.27
5326764--5326823	23	2.6	23	84	12	70	20	10	3	66	1.35
5331397--5331427	2	15.5	2	93	0	53	48	0	3	48	1.17
5341814--5341867	27	2.0	27	88	0	81	14	57	5	22	1.58
5345102--5345143	21	2.0	22	85	4	59	33	16	7	42	1.75
5355454--5355488	2	17.5	2	93	0	61	48	0	2	48	1.16
5356045--5356077	2	16.5	2	100	0	66	0	48	0	51	1.00
5357262--5357307	23	2.0	23	91	0	74	15	13	6	65	1.46
5365364--5365402	2	19.5	2	100	0	78	51	0	0	48	1.00
5373436--5373577	42	3.4	42	68	14	121	21	4	48	26	1.68
5373481--5373664	99	1.9	99	94	2	325	22	3	47	26	1.66
5386217--5386385	15	11.4	15	63	22	54	53	0	1	44	1.15
5386258--5386385	22	6.1	21	69	15	86	55	0	0	42	1.10
5386451--5386485	17	2.1	17	89	5	54	11	2	0	85	0.69
5386451--5386485	8	4.2	8	89	7	52	11	2	0	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5386583--5386637	22	2.5	22	96	0	101	30	7	1	60	1.35
5386533--5386616	43	2.0	42	83	6	107	21	11	5	60	1.52
5388488--5388523	18	1.9	18	88	5	54	27	0	2	69	1.02
5389821--5389881	24	2.5	23	82	15	61	37	0	0	62	0.96
5393102--5393182	27	3.1	27	61	10	69	32	14	22	30	1.94
5393078--5393182	51	2.1	51	100	0	210	29	14	20	36	1.92
5393075--5393156	24	3.3	24	63	9	65	26	13	17	42	1.86
5393906--5393940	16	2.1	17	89	5	54	31	0	0	68	0.90
5415856--5415889	17	2.0	18	88	11	54	47	0	0	52	1.00
5438958--5438990	17	2.0	16	94	5	57	42	6	3	48	1.43
5442143--5442237	37	2.6	37	91	3	147	29	26	9	34	1.88
5442931--5442964	17	2.0	18	88	11	54	41	0	5	52	1.25
5443883--5445519	530	3.1	528	77	7	1606	40	13	9	36	1.77
5448513--5448580	34	2.0	34	94	0	118	50	22	11	16	1.77
5459890--5459937	21	2.2	21	81	3	60	47	2	0	50	1.12
5462171--5462207	19	1.9	19	94	0	65	43	21	10	24	1.84
5470635--5470712	35	2.2	35	79	0	84	48	14	11	25	1.77
5470933--5471025	29	3.2	29	71	8	73	22	23	5	48	1.71
5477740--5477791	6	8.0	6	84	16	68	67	0	30	1	1.02
5477740--5477791	14	3.9	13	79	20	63	67	0	30	1	1.02
5477740--5477792	20	2.7	20	96	0	97	66	0	30	3	1.10
5477943--5477981	15	2.6	16	84	12	55	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5478877--5478903	2	13.5	2	100	0	54	48	0	0	51	1.00
5490223--5490269	24	2.0	24	83	8	60	44	8	23	23	1.80
5517489--5517538	2	25.0	2	95	0	91	50	2	0	48	1.12
5530010--5530078	35	2.0	35	91	0	111	44	23	15	15	1.85
5530010--5530097	35	2.5	35	81	7	99	44	21	17	17	1.87
5530341--5530399	29	2.0	29	83	6	75	18	23	6	50	1.70
5533617--5533660	15	2.8	16	89	6	72	0	20	0	79	0.73
5533617--5533658	14	2.8	15	92	7	68	0	19	0	80	0.70
5534861--5534890	2	15.0	2	100	0	60	50	0	0	50	1.00
5558671--5558725	22	2.5	22	91	2	85	18	27	30	23	1.97
5558890--5558923	15	2.3	15	94	0	59	55	0	2	41	1.15
5558899--5558952	25	2.2	25	87	9	76	50	0	3	46	1.19
5558850--5558989	15	9.6	15	67	24	52	50	0	2	47	1.13
5558875--5558962	40	2.1	41	79	8	99	52	0	2	45	1.13
5558954--5559008	26	2.1	26	83	6	67	54	0	0	45	0.99
5562994--5563050	13	4.1	14	71	26	50	42	1	0	56	1.10
5563393--5563422	16	1.9	16	93	6	53	30	0	6	63	1.20
5593276--5593325	25	2.0	25	84	7	66	42	12	16	30	1.84
5604989--5605033	2	22.5	2	95	0	81	46	0	2	51	1.13
5617787--5617824	20	1.9	20	94	0	67	23	5	21	50	1.69
5632996--5633049	12	4.2	12	77	11	54	48	1	0	50	1.11
5633697--5633776	21	3.7	21	76	14	74	53	3	0	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5633699--5633728	15	1.9	16	93	6	53	53	0	0	46	1.00
5633801--5633832	16	2.0	16	93	0	55	75	3	0	21	0.95
5633735--5634001	113	2.4	106	78	10	277	56	5	0	37	1.25
5633870--5633925	26	2.2	26	90	3	87	51	7	0	41	1.29
5633856--5633896	22	2.0	21	85	9	57	51	7	0	41	1.30
5634137--5634197	22	2.7	23	82	5	79	52	0	0	47	1.00
5634157--5634195	15	2.5	17	84	15	50	43	0	0	56	0.99
5634078--5634197	45	2.8	43	76	15	124	55	1	0	43	1.10
5634177--5634226	27	2.0	26	84	11	68	44	4	2	50	1.32
5634015--5634239	112	2.0	113	80	13	259	53	3	1	41	1.27
5643042--5643244	104	2.0	104	90	2	318	36	19	15	28	1.93
5653534--5653561	2	14.0	2	100	0	56	50	0	0	50	1.00
5656492--5656530	18	2.1	19	90	4	62	48	2	0	48	1.15
5657576--5657602	3	9.0	3	100	0	54	33	0	0	66	0.92
5666890--5666978	30	3.0	30	79	0	88	23	8	58	8	1.57
5666902--5667037	45	3.0	44	80	7	139	22	9	57	11	1.62
5666902--5666990	15	5.9	15	75	0	70	22	10	58	8	1.58
5666980--5667056	33	2.3	32	76	12	77	22	6	53	18	1.67
5668591--5668630	2	20.0	2	100	0	80	50	0	0	50	1.00
5668719--5668805	42	2.1	40	87	8	122	25	18	10	45	1.80
5681200--5681266	28	2.5	26	78	17	75	58	1	1	38	1.17
5692799--5692891	29	3.2	29	85	0	132	48	9	24	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5693590--5694128	272	2.0	268	98	1	1035	34	8	11	45	1.70
5694432--5694711	144	2.0	137	84	8	357	31	11	18	38	1.86
5696905--5696958	18	3.2	18	71	15	60	12	11	3	72	1.25
5696888--5696965	33	2.3	34	88	4	113	11	10	5	73	1.25
5696901--5696965	17	3.9	16	75	13	60	12	10	4	72	1.26
5703852--5703967	29	4.0	29	82	5	146	44	10	28	16	1.80
5703852--5703967	58	2.0	57	90	5	180	44	10	28	16	1.80
5706873--5706908	10	3.5	10	88	3	54	16	0	5	77	0.94
5710474--5710595	37	3.3	37	89	4	192	28	10	36	23	1.88
5711030--5711080	22	2.3	22	86	6	68	25	37	19	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106