genome.fa.s2.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  39  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14898080--14898161	22	3.8	22	80	7	105	30	12	18	39	1.87
14898056--14898225	44	3.8	44	77	6	144	31	12	17	38	1.88
14898056--14898225	22	7.5	23	73	9	91	31	12	17	38	1.88
14898171--14898223	23	2.3	23	90	0	79	33	11	16	37	1.85
14905152--14905484	31	11.0	31	71	8	202	27	14	30	28	1.95
14905191--14905409	116	1.9	116	80	0	258	27	14	29	28	1.95
14908053--14908202	60	2.5	61	90	1	230	35	22	19	23	1.96
14908126--14908165	21	1.9	21	89	0	62	27	22	22	27	1.99
14909003--14909112	43	2.6	43	85	5	134	20	34	19	26	1.96
14910742--14911079	145	2.3	145	84	2	428	33	16	19	30	1.94
14912522--14912787	31	8.6	31	89	0	361	33	20	15	30	1.94
14922564--14922691	24	5.4	24	66	7	82	25	33	16	25	1.96
14922559--14922690	47	2.8	46	90	4	201	24	33	16	25	1.96
14922693--14922885	23	8.4	23	74	6	149	22	32	14	30	1.94
14922693--14922885	46	4.2	46	74	10	169	22	32	14	30	1.94
14922911--14922966	23	2.4	23	90	0	85	23	39	12	25	1.89
14935146--14935234	21	4.2	21	85	1	106	41	16	16	24	1.89
14936638--14936735	12	7.2	12	69	24	61	65	8	2	24	1.31
14936646--14936730	30	2.8	30	82	8	102	62	8	2	27	1.36
14936638--14936735	42	2.3	41	83	8	126	65	8	2	24	1.31
14938547--14938593	22	2.1	23	84	4	60	29	4	14	51	1.62
14946009--14946383	199	1.9	198	86	7	535	40	6	3	49	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14948584--14948655	31	2.3	31	100	0	144	26	15	26	31	1.95
14948883--14948932	25	2.0	26	84	4	66	50	2	4	44	1.32
14951166--14951203	19	2.0	19	89	0	58	31	0	26	42	1.56
14951369--14951433	30	2.2	29	81	5	69	29	7	21	41	1.81
14957145--14957199	28	2.0	28	88	0	83	23	1	14	60	1.44
14963759--14963801	16	2.7	16	89	7	61	51	0	0	48	1.00
14963927--14963960	17	2.0	17	88	0	50	50	2	0	47	1.16
14975214--14975304	45	2.0	45	85	4	121	47	6	1	45	1.36
14975279--14975324	18	2.4	19	89	7	67	50	0	2	47	1.13
14975279--14975332	18	2.9	18	81	15	65	50	0	1	48	1.11
14975961--14976107	29	5.2	29	75	6	108	36	13	28	21	1.92
14976060--14976207	29	5.2	29	73	12	94	38	18	25	17	1.93
14976084--14976207	27	4.4	27	71	22	85	38	19	24	17	1.93
14981343--14981394	2	26.0	2	92	0	68	42	0	5	51	1.25
14981337--14981403	30	2.2	30	91	0	107	34	2	13	49	1.57
14986076--14986114	20	1.9	21	89	5	62	10	17	7	64	1.48
14990275--14990314	19	2.0	20	95	4	73	30	0	27	42	1.56
14995704--14995736	15	2.2	15	89	10	50	39	0	3	57	1.14
15001717--15001796	29	2.8	29	94	0	133	40	20	15	25	1.90
15013037--15013066	15	1.9	16	93	6	53	63	6	0	30	1.20
15013216--15013240	3	8.3	3	100	0	50	68	0	0	32	0.90
15014208--15014245	16	2.3	17	86	9	60	50	13	2	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15014209--15014399	100	1.9	101	87	1	285	49	12	4	32	1.61
15016770--15016856	31	2.9	30	75	3	84	22	19	13	43	1.86
15017209--15017299	37	2.5	36	75	7	85	15	20	19	43	1.87
15018613--15018694	42	2.0	42	92	0	137	23	31	23	21	1.98
15020852--15020895	9	4.9	9	83	8	54	68	2	6	22	1.25
15021152--15021236	43	2.0	44	86	6	120	37	20	18	23	1.94
15024205--15024268	31	2.1	31	82	5	76	25	26	10	37	1.89
15025059--15025109	25	2.0	25	88	0	75	49	7	1	41	1.43
15026567--15026620	23	2.3	23	100	0	108	14	33	11	40	1.82
15027413--15027536	43	2.9	43	80	7	137	26	18	34	20	1.95
15027533--15027592	23	2.6	23	86	0	75	26	3	38	31	1.73
15027913--15028044	60	2.2	60	80	9	144	25	22	24	28	2.00
15031572--15031681	49	2.3	48	87	1	157	24	33	17	24	1.96
15036467--15036696	80	2.9	80	84	3	304	33	26	9	31	1.88
15037744--15037816	21	3.6	21	74	5	69	41	12	10	35	1.78
15040972--15041068	33	2.9	33	89	0	140	26	10	30	31	1.90
15041274--15041368	39	2.4	39	76	0	100	22	18	14	44	1.86
15069629--15069671	20	2.1	21	86	4	61	65	11	0	23	1.25
15071172--15071196	13	1.9	13	100	0	50	48	0	0	52	1.00
15072350--15072415	28	2.3	29	84	2	80	45	18	6	30	1.73
15079679--15079735	2	28.5	2	100	0	114	50	0	0	49	1.00
15085661--15085713	21	2.6	20	75	21	56	45	1	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15085661--15085716	20	2.8	20	76	13	60	46	1	1	50	1.22
15092909--15092941	3	11.0	3	93	0	57	3	33	0	63	1.10
15102436--15102484	24	2.0	24	92	0	80	34	22	28	14	1.93
15105504--15105553	16	3.1	18	81	18	65	42	0	0	58	0.98
15105504--15105542	2	21.5	2	80	19	50	46	0	0	53	1.00
15105815--15105853	18	2.2	18	85	0	51	48	2	5	43	1.38
15105892--15105970	1	79.0	1	97	0	149	0	1	0	98	0.10
15106033--15106103	2	35.5	2	78	10	74	52	2	1	43	1.24
15117437--15117469	17	1.9	17	93	0	57	33	27	30	9	1.88
15122457--15122507	23	2.3	23	96	3	95	21	7	15	54	1.66
15124333--15124447	51	2.3	50	84	6	142	32	10	15	41	1.81
15130674--15130710	15	2.5	15	100	0	74	13	10	27	48	1.75
15133278--15133388	32	3.4	31	79	16	125	36	28	9	24	1.87
15133257--15133404	32	4.4	32	74	19	124	35	25	11	27	1.91
15133255--15133426	67	2.6	67	83	7	215	36	25	11	26	1.90
15136624--15136888	135	2.0	134	100	0	521	36	12	14	36	1.83
15138011--15138043	14	2.4	14	90	5	50	36	0	3	60	1.12
15139153--15139181	2	14.5	2	100	0	58	51	0	48	0	1.00
15139725--15139784	30	2.1	29	81	6	68	31	8	21	38	1.83
15145380--15145416	18	2.1	18	89	0	56	64	0	35	0	0.94
15146506--15146794	61	4.7	60	82	5	332	24	16	31	27	1.97
15151439--15151479	22	1.9	21	85	5	55	51	4	17	26	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15155413--15155449	18	2.1	18	89	0	56	64	0	35	0	0.94
15156536--15156827	61	4.8	61	89	0	413	23	18	32	25	1.97
15161560--15161592	2	17.0	2	93	6	59	51	0	48	0	1.00
15166610--15166660	25	2.0	26	84	3	68	72	7	0	19	1.08
15171270--15171303	12	2.8	12	81	0	50	17	17	2	61	1.46
15175318--15175393	36	2.1	36	90	0	116	35	25	13	26	1.92
15176093--15176221	54	2.4	55	81	3	145	33	17	15	33	1.92
15184808--15184853	18	2.5	18	83	13	58	58	2	0	39	1.10
15191982--15192054	8	8.2	8	83	16	83	84	0	2	12	0.71
15191981--15192054	10	7.6	10	76	15	75	83	0	2	13	0.74
15191987--15192054	28	2.5	27	88	9	102	85	0	2	11	0.71
15202602--15202633	15	2.1	16	94	5	57	18	28	0	53	1.45
15203847--15203927	34	2.4	34	85	2	99	22	13	27	37	1.91
15203942--15204048	35	3.1	34	85	4	133	31	11	27	29	1.91
15203957--15204048	34	2.7	35	86	1	123	31	13	25	30	1.93
15227302--15227375	34	2.2	34	90	0	121	17	10	35	36	1.85
15227414--15227538	34	3.6	34	84	1	151	28	9	27	34	1.88
15228556--15228625	30	2.4	29	86	11	90	62	10	27	0	1.26
15228687--15228783	34	2.9	34	88	0	95	19	14	31	34	1.92
15228705--15228793	34	2.6	34	90	0	142	20	14	31	33	1.93
15228885--15228970	34	2.5	34	77	11	86	32	16	26	24	1.96
15229096--15229139	22	2.0	22	82	8	54	75	2	20	2	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15229162--15229219	25	2.3	25	88	5	82	48	10	24	17	1.78
15231286--15231324	5	7.6	5	91	2	60	76	0	23	0	0.78
15234085--15234109	13	1.9	13	100	0	50	48	8	0	44	1.32
15239626--15239665	5	8.0	5	91	0	62	37	22	0	40	1.54
15239707--15239752	15	3.1	15	81	12	58	56	17	2	23	1.52
15241143--15241167	13	1.9	13	100	0	50	48	8	0	44	1.32
15244581--15244683	36	2.8	36	82	10	120	37	25	7	29	1.84
15245188--15245306	63	1.9	63	84	6	161	25	17	14	42	1.87
15245708--15245750	22	2.0	21	86	4	59	20	27	9	41	1.83
15245722--15245825	52	2.0	52	83	3	129	22	23	9	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106