genome.fa.s2.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: chr2
Parameters: 2 7 7 80 10 50 1000
Length:  41236440

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  9  of  106  ( 12678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4303504--4303545	18	2.3	18	83	0	57	76	0	2	21	0.90
4318864--4318913	3	16.7	3	82	0	64	6	2	60	32	1.32
4318873--4318922	12	4.2	12	84	0	55	12	2	54	32	1.49
4330873--4330901	2	14.5	2	100	0	58	48	0	0	51	1.00
4332171--4332211	19	2.2	19	86	0	55	53	2	0	43	1.13
4333527--4333585	28	2.1	28	83	3	73	50	0	1	47	1.11
4334441--4334498	17	3.4	16	79	9	62	81	0	13	5	0.86
4334451--4334495	13	3.8	12	80	8	56	88	0	4	6	0.61
4334451--4334495	23	2.0	23	86	8	65	88	0	4	6	0.61
4335123--4335369	62	4.0	62	76	7	195	29	15	28	25	1.96
4337721--4338415	78	8.9	78	82	4	758	27	22	18	30	1.97
4337729--4338415	231	3.0	229	80	5	763	28	22	18	30	1.98
4349116--4349524	154	2.7	153	89	4	628	40	10	11	38	1.74
4349407--4349608	88	2.3	87	93	0	332	38	8	13	39	1.76
4356406--4356446	20	2.0	20	86	9	57	26	14	14	43	1.84
4365258--4365299	22	2.0	21	85	4	57	54	0	0	45	0.99
4365435--4365504	23	3.1	22	67	15	61	41	2	4	51	1.36
4365570--4365683	36	3.3	36	68	16	114	41	5	3	49	1.42
4371212--4371259	24	2.0	23	88	4	69	41	14	8	35	1.76
4371740--4371771	10	2.8	12	81	18	50	78	0	0	21	0.76
4371736--4371773	11	3.5	11	83	16	53	76	0	0	23	0.79
4375550--4375620	16	4.2	17	72	15	58	69	0	2	26	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4380653--4380684	13	2.5	13	89	0	55	15	6	0	78	0.95
4380584--4380662	40	2.0	39	95	5	133	43	2	0	53	1.14
4380431--4380680	112	2.2	112	78	9	260	33	6	1	58	1.31
4397551--4397675	62	2.0	62	93	0	214	32	19	20	27	1.97
4408601--4408709	35	3.1	35	87	0	146	41	19	20	19	1.91
4409003--4409083	29	2.8	29	82	0	99	19	20	8	50	1.74
4409296--4409320	13	1.9	13	100	0	50	20	32	0	48	1.50
4416313--4416337	13	1.9	13	100	0	50	20	32	0	48	1.50
4416876--4416934	15	3.9	15	79	2	64	45	1	11	40	1.51
4416968--4417010	23	1.9	22	85	4	59	62	2	4	30	1.28
4417161--4417243	33	2.5	33	86	2	103	26	4	0	68	1.09
4417542--4417673	70	1.9	69	85	1	183	16	15	31	36	1.90
4420106--4420139	12	2.8	12	90	0	50	41	0	52	5	1.25
4426420--4428613	438	5.0	437	91	1	3475	32	24	11	30	1.91
4426420--4428613	874	2.5	872	91	2	3502	32	24	11	30	1.91
4443760--4443788	2	14.5	2	100	0	58	0	0	48	51	1.00
4478015--4478050	17	2.1	17	94	0	63	22	19	27	30	1.98
4497996--4498168	86	2.0	86	90	2	276	45	12	12	29	1.79
4500062--4500138	29	2.6	29	83	2	100	36	0	0	63	0.95
4500076--4500135	31	1.9	31	86	6	86	31	0	0	68	0.90
4500086--4500148	31	2.0	31	81	6	74	36	0	0	63	0.95
4504618--4504642	7	3.6	7	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4505488--4505519	15	2.1	15	94	0	55	6	37	6	50	1.53
4508505--4508537	11	2.9	12	86	13	52	0	6	6	87	0.65
4512181--4512298	46	2.6	45	81	11	134	47	1	3	47	1.29
4512185--4512254	23	3.1	21	73	13	68	42	0	4	52	1.20
4512292--4512393	45	2.3	45	86	6	138	46	5	1	46	1.38
4531679--4531939	36	7.3	36	81	6	291	26	18	34	21	1.96
4531702--4531902	105	1.9	105	86	4	289	27	17	32	21	1.96
4531679--4531939	141	1.9	141	81	4	321	26	18	34	21	1.96
4547191--4547277	25	3.3	25	73	17	70	68	1	2	27	1.08
4547267--4547328	29	2.1	29	82	5	72	66	0	4	29	1.12
4555582--4555610	3	9.7	3	100	0	58	65	0	0	34	0.93
4561120--4561200	26	3.1	26	89	0	117	17	12	28	41	1.85
4570634--4570666	15	2.2	15	89	10	50	48	0	0	51	1.00
4572898--4572923	2	13.0	2	100	0	52	50	0	50	0	1.00
4582807--4582884	25	3.2	24	73	7	77	52	2	2	42	1.28
4582853--4582910	19	3.1	19	78	7	55	46	5	3	44	1.42
4585332--4585373	20	2.1	20	86	8	59	2	40	0	57	1.12
4587509--4587560	21	2.4	21	87	12	70	48	3	1	46	1.31
4594787--4595010	105	2.1	105	86	1	315	37	6	15	40	1.74
4597339--4597396	17	3.4	17	81	13	73	36	5	10	48	1.60
4600166--4600447	147	1.9	147	85	7	385	21	14	8	54	1.66
4602635--4602690	29	1.9	29	96	0	103	32	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4606127--4606152	2	13.0	2	100	0	52	50	0	0	50	1.00
4610924--4611014	42	2.2	42	85	0	119	17	16	4	61	1.50
4612793--4612857	32	2.0	32	87	0	94	33	6	10	49	1.63
4613355--4613410	22	2.6	22	74	2	60	39	0	0	60	0.97
4622707--4622857	75	2.0	75	89	5	234	25	18	19	35	1.95
4629708--4629963	130	2.0	130	88	3	381	33	14	21	31	1.92
4634628--4634652	3	8.3	3	100	0	50	68	0	32	0	0.90
4634910--4634940	2	15.5	2	93	0	53	54	0	45	0	0.99
4635236--4635280	10	4.8	10	83	10	51	2	2	11	84	0.80
4639950--4639979	1	30.0	1	100	0	60	100	0	0	0	0.00
4646535--4646571	18	2.1	18	94	0	65	27	24	32	16	1.96
4647149--4647236	46	1.9	46	90	0	140	28	25	14	31	1.95
4656241--4656265	12	2.1	12	100	0	50	8	16	24	52	1.70
4660457--4660536	33	2.4	33	100	0	160	32	43	17	6	1.74
4660657--4660993	21	14.8	21	71	16	183	22	55	5	17	1.62
4660722--4660902	27	7.3	27	72	14	95	23	54	4	17	1.62
4660680--4660947	96	2.8	96	78	7	258	22	55	5	17	1.62
4660751--4661043	75	4.2	69	73	15	197	22	55	4	17	1.59
4660989--4661085	21	4.6	21	72	12	83	21	56	5	16	1.59
4661013--4661082	18	3.6	18	67	20	50	21	54	5	18	1.64
4660989--4661085	42	2.3	42	91	3	151	21	56	5	16	1.59
4660652--4661101	117	3.8	117	75	10	350	22	54	5	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4672476--4672509	8	4.4	8	85	7	52	35	0	2	61	1.11
4678451--4678479	7	4.3	7	91	8	51	89	10	0	0	0.48
4690192--4690316	36	3.7	36	74	18	124	32	8	9	49	1.65
4690518--4690560	22	2.0	22	95	0	77	51	4	4	39	1.44
4697334--4697691	117	3.1	117	100	0	716	41	10	25	22	1.86
4719145--4719189	2	22.5	2	95	0	81	51	0	0	48	1.00
4719223--4719266	2	22.5	2	95	4	81	50	0	0	50	1.00
4719144--4719293	77	1.9	77	98	1	284	41	8	8	40	1.67
4722389--4722424	1	36.0	1	94	0	54	0	5	0	94	0.31
4727473--4727516	3	14.7	3	90	9	72	31	2	65	0	1.05
4728660--4728764	52	2.0	52	87	7	151	29	8	21	40	1.83
4729544--4729583	20	2.0	20	90	0	62	22	10	15	52	1.71
4735419--4735449	2	15.5	2	100	0	62	0	51	0	48	1.00
4736594--4736641	24	1.9	24	83	8	60	37	14	2	45	1.57
4755286--4755331	3	15.3	3	81	0	56	36	28	0	34	1.58
4765256--4765337	40	2.0	40	92	0	137	28	19	10	41	1.85
4776087--4776130	2	22.0	2	100	0	88	50	0	0	50	1.00
4778782--4778836	2	27.5	2	100	0	110	50	0	0	49	1.00
4786938--4787016	32	2.4	33	87	2	106	64	3	2	29	1.24
4787225--4787264	15	2.7	15	88	0	53	40	25	0	35	1.56
4790599--4790659	31	2.0	31	83	3	79	50	6	0	42	1.28
4790943--4791015	37	2.0	36	89	2	110	58	4	1	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4792374--4792459	29	3.0	29	77	1	93	20	25	3	50	1.64
4795358--4795384	3	9.0	3	100	0	54	0	33	33	33	1.58
4798122--4798162	17	2.5	18	81	18	54	53	0	4	41	1.22
4798457--4800307	337	5.5	337	99	0	3684	29	13	11	45	1.78
4801116--4801152	18	2.1	18	100	0	74	35	0	16	48	1.46
4804841--4804876	16	2.2	17	90	5	56	13	16	16	52	1.74
4817123--4817158	2	17.5	2	88	5	54	2	44	2	50	1.31
4822028--4822052	5	5.0	5	100	0	50	20	80	0	0	0.72
4829290--4829315	6	4.3	6	100	0	52	50	0	50	0	1.00
4829454--4829491	15	2.5	16	83	8	53	34	0	63	2	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106